Carolina Ivon Paris

Due to diverse factors the commercial crops of vanilla are highly vulnerable to genetic erosion. The species Vanilla chamissonis Klotzsch has been shown to produce interesting bioeconomic compounds that could diversify the market. In Argentina, the distribution of this fragrant orchid is restricted to specific north-eastern regions, like the Osununú Natural Reserve (at San Ignacio, Misiones), where it grows wildly in sectors (nuclei). This germplasm represents a locally adapted endemism, and thus is a valuable resource worth preserving. Herein, the genetic characterization of unexplored V. chamissonis´ germplasm was accomplished; as well, the specimens´ molecular identification was assessed in a phylogenetic context using nuclear and chloroplastidial markers. The genotyping exposed that, at least, four gene pools contribute to the genetic diversity of these plants, and that ca. 81% of total genetic variation is allocated within populations. Present results suggest a predominance of sexual reproduction, that population N1 emerges as a candidate unit worth conserving, and that a genetic discontinuity was evidenced between northeastern and southwestern nuclei due to their different genetic constitutions. In concurrence, a tenuous isolation by distance was also unveiled. Our phylogenetic results suggest that it is appropriate to consider the vanilla germplasm surveyed as V. chamissonis. The basic knowledge generated in this work will aid in guiding the in-situ conservation and management initiative, ongoing at the Osununú´s reserve.

This study provides the first detailed characterization of the life cycle and reproductive physiology of Linepithema humile in its native range. Sampling over one year revealed clear seasonal patterns in colony composition, with workers dominating year-round, males emerging in spring, and queens produced a few weeks later. Queen density fluctuated seasonally, peaking in spring, but no clear evidence of the large-scale queen executions in spring observed in invasive populations was detected. Laboratory observations, however, confirm that workers can eliminate nestmate queens, suggesting that queen killing is an intrinsic behavior of this species. Comparative analyses of reproductive physiology revealed notable differences between native and invasive queens. Native queens maintain ovarian activity and lay eggs during winter, whereas invasive queens enter a physiological rest, ceasing oviposition. In spring, invasive queens exhibit higher egg-laying rates and ovarian indices than native queens, likely reflecting warmer nest temperatures, reduced interspecific competition, and energy allocation strategies linked to invasion. No differences were observed from late spring through summer, but in autumn invasive queens reduce egg-laying in preparation for winter, whereas native queens maintain their ovarian and egg-laying activity. These findings indicate that while the overall life cycle is largely conserved, key reproductive strategies have diverged. Avoiding winter oviposition may allow invasive colonies to maximize spring worker production, contributing to their ecological dominance. Establishing a native-range baseline thus provides essential context to understand which traits have shifted during invasion and the mechanisms contributing to the global success of L. humile .

Aim: Pathogens can play an important role in biological invasions. Introduced populations may be particularly vulnerable to pathogens due to factors such as low genetic diversity and high population density. However, introduced populations that escape their natural pathogens may reallocate resources away from immunity and towards growth and reproduction. Interestingly, introduced ants have been suggested to have increased tolerance to new pathogens, contributing to their success as introduced species. In this study, we aimed to investigate whether introduced Argentine ant populations harbour different viral loads compared to native populations and if these differences were related to immunity‐related gene expression.Location: The study was conducted across the native range of Argentine ants in Argentina and four introduced regions in California, France, Australia and New Zealand.Methods: We used RT‐qPCR to quantify viral loads and gene expression in the ants. We analysed 15 different potentially pathogenic viruses across the Argentine ant's native and introduced ranges.Results: We found that five viruses, LhuPcV1, LhuPiLV1, LhuCV1, Kashmir Bee virus and LHUV‐1, presented high loads in Argentine ants compared to the other viruses we screened. We found a significant effect of range on viral infections: high viral loads were commonly found in ants from introduced populations, which also exhibited increased immune gene expression. We found highly significant correlations between viral loads and expression of immune and metabolic genes. However, these associations were not fully consistent across the studied regions, indicating the complexity of eco‐immunological phenomena.Main Conclusions: Our results suggest that introduced Argentine ant populations host different viral communities compared to native populations and that these differences are correlated with changes in immunity‐related gene expression. The study highlights the complex role of pathogens in biological invasions and the importance of considering eco‐immunological factors when assessing the impact of introduced species.

Ants, an ecologically successful and numerically dominant group of animals, play key ecological roles as soil engineers, predators, nutrient recyclers, and regulators of plant growth and reproduction in most terrestrial ecosystems. Further, ants are widely used as bioindicators of the ecological impact of land use. We gathered information of ant species in the Atlantic Forest of South America. The ATLANTIC ANTS data set, which is part of the ATLANTIC SERIES data papers, is a compilation of ant records from collections (18,713 records), unpublished data (29,651 records), and published sources (106,910 records; 1,059 references), including papers, theses, dissertations, and book chapters published from 1886 to 2020. In total, the data set contains 153,818 ant records from 7,636 study locations in the Atlantic Forest, representing 10 subfamilies, 99 genera, 1,114 ant species identified with updated taxonomic certainty, and 2,235 morphospecies codes. Our data set reflects the heterogeneity in ant records, which include ants sampled at the beginning of the taxonomic history of myrmecology (the 19th and 20th centuries) and more recent ant surveys designed to address specific questions in ecology and biology. The data set can be used by researchers to develop strategies to deal with different macroecological and region‐wide questions, focusing on assemblages, species occurrences, and distribution patterns. Furthermore, the data can be used to assess the consequences of changes in land use in the Atlantic Forest on different ecological processes. No copyright restrictions apply to the use of this data set, but we request that authors cite this data paper when using these data in publications or teaching events.

Introgression has been proposed as an essential source of adaptive genetic variation. However, a key barrier to adaptive introgression is that recombination can break down combinations of alleles that underpin many traits. This barrier might be overcome in supergene regions, where suppressed recombination leads to joint inheritance across many loci. Here, we study the evolution of a large supergene region that determines a major social and ecological trait in Solenopsis fire ants: whether colonies have one queen or multiple queens. Using coalescent-based phylogenies built from the genomes of 365 haploid fire ant males, we show that the supergene variant responsible for multiple-queen colonies evolved in one species and repeatedly spread to other species through introgressive hybridization. This finding highlights how supergene architecture can enable a complex adaptive phenotype to recurrently permeate species boundaries.

Supergene regions maintain alleles of multiple genes in tight linkage through suppressed recombination. Despite their importance in determining complex phenotypes, our empirical understanding of early supergene evolution is limited. Here we focus on the young ‘social’ supergene of fire ants, a powerful system for disentangling the effects of evolutionary antagonism and suppressed recombination. We hypothesize that gene degeneration and social antagonism shaped the evolution of the fire ant supergene, resulting in distinct patterns of gene expression. We test these ideas by identifying allelic differences between supergene variants, characterizing allelic expression across populations, castes and body parts, and contrasting allelic expression biases with differences in expression between social forms. We find strong signatures of gene degeneration and gene-specific dosage compensation. On this background, a small portion of the genes has the signature of adaptive responses to evolutionary antagonism between social forms.

Supergenes are genomic regions of suppressed recombination that underlie complex polymorphisms. Despite the importance of such regions, our empirical understanding of their early evolution is limited. The young “social” supergene of the fire ant Solenopsis invicta provides a powerful system for disentangling the roles of evolutionary conflict and the implications of suppressed recombination. We used population genomics to identify genetic differences between supergene variants and gene expression analyses across different populations, castes and body parts to characterize allelic expression differences for the hundreds of genes in the supergene. We find that the expression of most genes is independent of social form or supergene variant, in line with the young age of this system. Many of the genes with allelic expression differences, however, show a pattern consistent with gene degeneration due to suppressed recombination. In contrast, a small portion of the genes has the signature of evolutionary conflict between social forms.

Biological invasions can be influenced by trait variation in the invader, such as behavioural traits and ecological factors, such as variation in pathogen pressure. High-throughput nucleotide sequencing has increased our capacity to investigate the genomic basis of the functional changes associated with biological invasions. Here, we used RNA-sequencing in Argentina and California, Australia and New Zealand to investigate if native and introduced Argentine ant populations were characterised by distinct transcriptomic signatures. We focused our analysis on viral pressure and immunity, as well as genes associated with biogenic amines known to modulate key behaviour in social insects. Using a combination of differential expression analysis, gene co-expression network analysis and candidate gene approach, we show that native and introduced populations have distinct transcriptomic signatures. Genes associated with biogenic amines were overall up-regulated in the native range compared to introduced populations. Although we found no significant variation in overall viral loads amongst regions for viruses known to infect Argentine ants, viral diversity was lower in most of the introduced range which was interestingly associated with down-regulation of the RNAi immune pathway, primarily directed against viruses. Altogether, our data show that Argentine ant populations exhibit range-specific transcriptomic signatures, perhaps reflecting regional adaptations that may contribute to the ecological success of introduced populations.

Long-term suppression of recombination ultimately leads to gene loss, as demonstrated by the depauperate Y and W chromosomes of long-established pairs of XY and ZW chromosomes. The young social supergene of the Solenopsis invicta red fire ant provides a powerful system to examine the effects of suppressed recombination over a shorter timescale. The two variants of this supergene are carried by a pair of heteromorphic chromosomes, referred to as the social B and social b (SB and Sb) chromosomes. The Sb variant of this supergene changes colony social organization and has an inheritance pattern similar to a Y or W chromosome because it is unable to recombine. We used high-resolution optical mapping, k-mer distribution analysis, and quantification of repetitive elements on haploid ants carrying alternate variants of this young supergene region. We find that instead of shrinking, the Sb variant of the supergene has increased in length by more than 30%. Surprisingly, only a portion of this length increase is due to consistent increases in the frequency of particular classes of repetitive elements. Instead, haplotypes of this supergene variant differ dramatically in the amounts of other repetitive elements, indicating that the accumulation of repetitive elements is a heterogeneous and dynamic process. This is the first comprehensive demonstration of degenerative expansion in an animal and shows that it occurs through nonlinear processes during the early evolution of a region of suppressed recombination.