Shinya Nakamura
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Research Subjects
Shinya Nakamura has a total of 44 co-authors. Here are the top co-authors by number of shared publications:
Sho Kimura
Faculty of Agriculture, University of the Ryukyus, Nishihara, Japan
6 shared publicationsShriwantha Buddhi Vithana
6 shared publicationsSeiichi Gibo
5 shared publications- Ken Okamoto
Tropical Agriculture Research Front, Japan International Research Center for Agricultural Sciences, 1091-1 Maezato-Kawarabaru, Ishigaki, Okinawa 907-0002, Japan
3 shared publications K SAKAI
Facultyof Agriculture, University of the RyukyusSenbaru1, Nishihara,Okinawa 903-0213, Japan
2 shared publicationsKazuhiko Egashira
2 shared publications
Latest Publications
- 10 October 2026
- Published by Springer Nature
- p. 184-199
A Systematic Comparison of Muscle Deformation Sensor Placement for Subject-Independent Cognitive State Classification
- 10 October 2026
- Published by Springer Nature
- p. 184-199
A Systematic Comparison of Muscle Deformation Sensor Placement for Subject-Independent Cognitive State Classification
- Open Access
- 15 February 2023
- Published by Elsevier in Brain Stimulation
- Vol. 16 (1) , 316-317
Impact of multiple sessions of low-frequency transcranial magnetic stimulation targeting ventral medial frontal cortex on behavioral and physiological states in monkeys
- 15 February 2023
- Published by Elsevier in Brain Stimulation
- Vol. 16 (1) , 316-317
Open AccessImpact of multiple sessions of low-frequency transcranial magnetic stimulation targeting ventral medial frontal cortex on behavioral and physiological states in monkeys
- Open Access
Global Optimization of Cultivar Trait Parameters in the Simulation of Sugarcane Phenology Using Gaussian Process Emulation
The global optimization of parameters in process-based crop models is often considered computationally expensive. Gaussian process (GP) emulation is a widely used method for reducing the computational burden of the optimization process. Total above-ground biomass and cane dry weight of three Thai sugarcane cultivars (KK3, LK92-11 and 02-2-058) collected under rainfed and irrigated conditions were used to optimize cultivar-specific parameters in the Agricultural Production Systems sIMulator (APSIM)-Sugarcane crop model through a GP emulation. GP emulators were trained and validated to approximate APSIM-Sugarcane model and then used for optimizing the cultivar-specific parameters through the differential evolution algorithm. Resulting optimized parameters allowed to obtain simulations that quite well approximated the observed biomass and CDW (validation results between simulated and observed yields: R2 0.93–0.98; normalized root mean squared error: 5–22%; Willmott’s agreement index: 0.87–0.99). The best parametrization was obtained under the lowest water stressed conditions. Based on these results, we suggest that GP emulation can be efficiently implemented for the parameterization of computationally expensive simulators.
Open AccessGlobal Optimization of Cultivar Trait Parameters in the Simulation of Sugarcane Phenology Using Gaussian Process Emulation
The global optimization of parameters in process-based crop models is often considered computationally expensive. Gaussian process (GP) emulation is a widely used method for reducing the computational burden of the optimization process. Total above-ground biomass and cane dry weight of three Thai sugarcane cultivars (KK3, LK92-11 and 02-2-058) collected under rainfed and irrigated conditions were used to optimize cultivar-specific parameters in the Agricultural Production Systems sIMulator (APSIM)-Sugarcane crop model through a GP emulation. GP emulators were trained and validated to approximate APSIM-Sugarcane model and then used for optimizing the cultivar-specific parameters through the differential evolution algorithm. Resulting optimized parameters allowed to obtain simulations that quite well approximated the observed biomass and CDW (validation results between simulated and observed yields: R2 0.93–0.98; normalized root mean squared error: 5–22%; Willmott’s agreement index: 0.87–0.99). The best parametrization was obtained under the lowest water stressed conditions. Based on these results, we suggest that GP emulation can be efficiently implemented for the parameterization of computationally expensive simulators.
- Open Access
- 1 May 2018
- Published by Railway Technical Research Institute in Quarterly Report of RTRI
- Vol. 59 (2) , 121-127
Countermeasure for Reducing Micro-pressure Waves by Spreading Ballast on the Slab-track in the Tunnel
- 1 May 2018
- Published by Railway Technical Research Institute in Quarterly Report of RTRI
- Vol. 59 (2) , 121-127
Open AccessCountermeasure for Reducing Micro-pressure Waves by Spreading Ballast on the Slab-track in the Tunnel
- 30 December 2015
- Published by ALOKI Ltd in Applied Ecology and Environmental Research
- Vol. 13 (4) , 981-992
SIMULATION OF N2O EMISSIONS FROM A SUGARCANE FIELD IN OKINAWA, JAPAN
We measuredN2O emissions from a sugarcane field planted in spring 2011 in Okinawa,and examined theirvariations during the summer growing period (13 July to 4 August).Then we performed simulations with the DeNitrification and DeComposition(DNDC)and Agricultural Production Systems Simulator(APSIM)modelsto estimate N2O emissionsand compared the results with the observed data from the field experiment.Theresults showedthat (i) nitrification was the dominantprocessaffecting N2O emissionsand nitrifier denitrification occurred under high soil moisture conditions after rainfall;(ii) there was large spatial dispersion of N2O emissions even in the same field,and it was necessary to consider this dispersion to estimate total N2O emissions from the field; (iii) the emission factor of the N2O emissions might be larger than that used by the National GreenhouseGas Inventory of Japan;(iv) the DNDC model overestimated,and the APSIM model underestimated,the observed N2O emissions; and(v) simulation of N2O emissions associated withnitrificationby the DNDC model might be improved by modifyingcoefficients in the equationusedto calculate N2O production during nitrification.
- 30 December 2015
- Published by ALOKI Ltd in Applied Ecology and Environmental Research
- Vol. 13 (4) , 981-992
SIMULATION OF N2O EMISSIONS FROM A SUGARCANE FIELD IN OKINAWA, JAPAN
We measuredN2O emissions from a sugarcane field planted in spring 2011 in Okinawa,and examined theirvariations during the summer growing period (13 July to 4 August).Then we performed simulations with the DeNitrification and DeComposition(DNDC)and Agricultural Production Systems Simulator(APSIM)modelsto estimate N2O emissionsand compared the results with the observed data from the field experiment.Theresults showedthat (i) nitrification was the dominantprocessaffecting N2O emissionsand nitrifier denitrification occurred under high soil moisture conditions after rainfall;(ii) there was large spatial dispersion of N2O emissions even in the same field,and it was necessary to consider this dispersion to estimate total N2O emissions from the field; (iii) the emission factor of the N2O emissions might be larger than that used by the National GreenhouseGas Inventory of Japan;(iv) the DNDC model overestimated,and the APSIM model underestimated,the observed N2O emissions; and(v) simulation of N2O emissions associated withnitrificationby the DNDC model might be improved by modifyingcoefficients in the equationusedto calculate N2O production during nitrification.
- Open Access
Optimal Choice of Soil Hydraulic Parameters for Simulating the Unsaturated Flow: A Case Study on the Island of Miyakojima, Japan
We examined the influence of input soil hydraulic parameters on HYDRUS-1D simulations of evapotranspiration and volumetric water contents (VWCs) in the unsaturated zone of a sugarcane field on the island of Miyakojima, Japan. We first optimized the parameters for root water uptake and examined the influence of soil hydraulic parameters (water retention curve and hydraulic conductivity) on simulations of evapotranspiration. We then compared VWCs simulated using measured soil hydraulic parameters with those using pedotransfer estimates obtained with the ROSETTA software package. Our results confirm that it is important to always use soil hydraulic parameters based on measured data, if available, when simulating evapotranspiration and unsaturated water flow processes, rather than pedotransfer functions.
Open AccessOptimal Choice of Soil Hydraulic Parameters for Simulating the Unsaturated Flow: A Case Study on the Island of Miyakojima, Japan
We examined the influence of input soil hydraulic parameters on HYDRUS-1D simulations of evapotranspiration and volumetric water contents (VWCs) in the unsaturated zone of a sugarcane field on the island of Miyakojima, Japan. We first optimized the parameters for root water uptake and examined the influence of soil hydraulic parameters (water retention curve and hydraulic conductivity) on simulations of evapotranspiration. We then compared VWCs simulated using measured soil hydraulic parameters with those using pedotransfer estimates obtained with the ROSETTA software package. Our results confirm that it is important to always use soil hydraulic parameters based on measured data, if available, when simulating evapotranspiration and unsaturated water flow processes, rather than pedotransfer functions.
- 5 April 2015
- Published by ALOKI Ltd in Applied Ecology and Environmental Research
- Vol. 13 (2)
N2O EMISSIONS FROM SHIMAJIRI-MAJI (CALCARIC DARK RED SOIL) AFTER APPLYING TWO CHEMICAL FERTILIZERS
Nitrous oxide (N2O) emissions from Shimajiri-maji (calcaric dark red soil)from Okinawa, Japan, were measured in the laboratory by a closed-chamber incubation methodafter applying two different chemical fertilizers(normal fertilizer,NF;controlled-release fertilizer,CF). The total nitrogen content was 45% in both NF and CF. At higher temperatures (30°C) CF had better potential to reduce N2O emissions than atlower temperatures (20°C), withtotal N2O emissions,from highest to lowest,followingthe pattern of NFat 30°C>CFat 30°C>CFat 20°C>NFat 20°C.Under alternately saturated and drained conditions, the highest peaks of N2O fluxes tended to occur soon after drainagewith both CF and NF,and nitrification wasthe primary sourceof N2O emissions. Conversely, only slight N2O emissions were detected during prolonged saturated conditions,and it was assumed that denitrification was the secondary source of N2O. This suggests that replacing types of nitrogen fertilizers (replacing NF with CF) does not necessarily result in a direct reduction in N2O emissionsas some earlier studies have reported. It is therefore important to continuously monitor temperature and soil moisture content during fertilization and modify the fertilizer accordingly toachieve effective reduction of N2O emissions and minimize environmental impacts.
- 5 April 2015
- Published by ALOKI Ltd in Applied Ecology and Environmental Research
- Vol. 13 (2)
N2O EMISSIONS FROM SHIMAJIRI-MAJI (CALCARIC DARK RED SOIL) AFTER APPLYING TWO CHEMICAL FERTILIZERS
Nitrous oxide (N2O) emissions from Shimajiri-maji (calcaric dark red soil)from Okinawa, Japan, were measured in the laboratory by a closed-chamber incubation methodafter applying two different chemical fertilizers(normal fertilizer,NF;controlled-release fertilizer,CF). The total nitrogen content was 45% in both NF and CF. At higher temperatures (30°C) CF had better potential to reduce N2O emissions than atlower temperatures (20°C), withtotal N2O emissions,from highest to lowest,followingthe pattern of NFat 30°C>CFat 30°C>CFat 20°C>NFat 20°C.Under alternately saturated and drained conditions, the highest peaks of N2O fluxes tended to occur soon after drainagewith both CF and NF,and nitrification wasthe primary sourceof N2O emissions. Conversely, only slight N2O emissions were detected during prolonged saturated conditions,and it was assumed that denitrification was the secondary source of N2O. This suggests that replacing types of nitrogen fertilizers (replacing NF with CF) does not necessarily result in a direct reduction in N2O emissionsas some earlier studies have reported. It is therefore important to continuously monitor temperature and soil moisture content during fertilization and modify the fertilizer accordingly toachieve effective reduction of N2O emissions and minimize environmental impacts.
- 1 January 2015
- Published by Elsevier in Soil and Tillage Research
- Vol. 145, 47-54
Influence of effective normal stress in the measurement of fully softened strength in different origin landslide soils
- 1 January 2015
- Published by Elsevier in Soil and Tillage Research
- Vol. 145, 47-54
Influence of effective normal stress in the measurement of fully softened strength in different origin landslide soils
- 24 December 2013
- Published by Springer Nature in Landslides
- Vol. 11 (6) , 969-979
Shearing rate effect on residual strength of landslide soils in the slow rate range
- 24 December 2013
- Published by Springer Nature in Landslides
- Vol. 11 (6) , 969-979
Shearing rate effect on residual strength of landslide soils in the slow rate range
- 1 March 2012
- Published by Elsevier in Engineering Geology
- Vol. 131-132, 29-36
Effects of overconsolidation ratios on the shear strength of remoulded slip surface soils in ring shear
- 1 March 2012
- Published by Elsevier in Engineering Geology
- Vol. 131-132, 29-36
Effects of overconsolidation ratios on the shear strength of remoulded slip surface soils in ring shear