Satish Kumar

The use of beneficial microbes is hitherto known and constantly increasing in agriculture due to their positive impact on crop growth and yield, and their minimal negative impact on the environment. The objective of this study was to evaluate the impact of eight Trichoderma strains of diverse origin on crop growth and yield of onion under field conditions. The identity of the strains used in the current study was confirmed by ITS and Tef1 gene sequencing. Field experiments were conducted in the Rabi season for 2 years (2020–21, and 2022–23) to evaluate the effect of the application of eight different Trichoderma strains that were applied individually and separately as eight different treatments (T1–T8) in experimental plots. In the plant growth promotion assay conducted in vitro, all strains showed the ability to produce IAA (indole-3-acetic acid), with levels ranging from 23.52 μg/mL (T6) to 45.54 μg/mL (T3). Our results revealed that Trichoderma treated experimental plots displayed better growth indices (plant height, pseudostem diameter), RWC (Relative water content), leaf chlorophyll content, and yield-attributing features like biomass (bulb and root dry mass), bulb diameter, and harvested bulb yield compared to the untreated control plants. In terms of yield, the T2 strain exhibited the highest bulb yield consistently for both the years (2020–21 and 2022–23) followed by T3 being statistically at par with T5. Among all the evaluated Trichoderma strains, the strain T2 (OGRDT2) and T3 (GRDT1), taxonomically identified as Trichoderma longibrachiatum, registered bulb yield of 32.24 t/ha and 30.76 t/ha, respectively while T5 (GRDT3), identified as Trichoderma asperellum, registered 30.55 t/ha average yield for 2 years compared to 24.08 t/ha average yield recorded for untreated control plants with an increase of 34, 28 and 27%, respectively. Based on our findings, it is concluded that the T. longibrachiatum strains OGRDT2 (T2) and GRDT1 (T3), T. asperellum strain GRDT3 (T5) are the best inducers of the onion crop growth and yield in the Rabi season and would be explored further for its commercial application in onion farming.

Over the past decade, there have been accumulating reports from researchers, farmers, and field extension personnel on the increasing incidence and spread of onion basal rot in India. Onion basal rot disease is mainly caused by Fusarium spp. This study aimed to validate the information on the active prevalence of F. falciforme and F. acutatum causing Fusarium basal rot (FBR) in Maharashtra. A survey was conducted, and the infected plants/bulbs were collected from fields of 38 locations comprising five districts of Maharashtra, namely, Nashik, Aurangabad, Solapur, Ahmednagar, and Pune, in 2023. This disease was prevalent in high-moisture and high-oil-temperature conditions and the symptoms were observed in most of the fields, with the FBR incidence ranging from 17 to 41%. The available data of basal rot incidence from 1998 to 2022 were analyzed, based on which the prevalence of FBR was 11–50%. Tissue from the infected samples of onion bulbs was used for the isolation. The identification was performed based on colony morphology and microscopic features and confirmed through molecular markers using ITS and Tef-1α gene primers. Of the ten Fusarium isolates collected from selected locations, six species were confirmed as F. acutatum and four as F. falciforme. The pathogenicity tests performed with onion seedlings and bulbs under moist conditions proved that both F. acutatum and F. falciforme independently could cause basal rot disease symptoms but with different degrees of virulence. Koch’s postulates were confirmed by reisolating the same pathogens from the infected plants. Thus, the active prevalence of FBR was confirmed in Maharashtra and also, to the best of our knowledge, this is the first report of F. falciforme and F. acutatum causing basal rot of onion independently in Maharashtra, India.

Colletotrichum is an important plant pathogenic fungi that causes anthracnose/-twister disease in onion. This disease was prevalent in the monsoon season from August to November months and the symptoms were observed in most of the fields. This study aimed to investigate the pathogenicity and cumulative effect, if any of Colletotrichum gloeosporioides and Fusarium acutatum. The pot experiment was laid out to identify the cause responsible for inciting anthracnose-twister disease, whether the Colletotrichum or Fusarium or both, or the interaction of pathogens and GA3. The results of the pathogenicity test confirmed that C. gloeosporioides and F. acutatum are both pathogenic. C. gloeosporioides caused twisting symptoms independently, while F.acutatum independently caused only neck elongation. The independent application of GA3 did not produce any symptoms, however, increased the plant height. The combined treatment of C. gloeosporioides and F. acutatum caused twisting, which enhanced upon interaction with GA3 application giving synergistic effect. The acervuli were found in lesions infected with C. gloeosporioides after 8 days of inoculation on the neck and leaf blades. Symptoms were not observed in untreated control plants. Koch's postulates were confirmed by reisolating the same pathogens from the infected plants.

Exogenous growth regulators (GRs) play a crucial role in alleviating water stress and sustaining crop yields in water-stressed areas. However, their effects on onions post-harvest quality, particularly post-monsoon onion—often preferred for long-term storage—were never studied. Therefore, this led us to investigate the interaction between water stress and GRs on the physiochemical and functional quality attributes of onions during long-term storage (9 months, at 25 ± 1 °C and 65 ± 5% RH). Onion crop was raised under four water stress levels i.e., 1.00–0.85, 0.84–0.70, 0.69–0.40, and 0.39–0.10 IW: CPE, designated as no, low, medium, and severe water stress, respectively, using a line source sprinkler system (LSS). GR treatments include potassium nitrate (PN, 15 g L⁻¹), sodium benzoate (SB, 100 mg L⁻¹), thio-urea (TU, 450 ppm), and gibberellic acid (GA, 25 ppm). Results reveal that the significant temporal changes in the dry matter, rehydration ratio, total soluble sugar (TSS), protein, and total phenolics content (TP) of the onion bulbs during storage, indicate the cumulative impact of the treatments on overall physicochemical status. Water stress increased onion biochemical attributes, especially pyruvic acid content, superoxide dismutase (SOD), and peroxidase (POD) activity. Storage quality of onions progressively decreased with the increase in storage period. Stressed onions, especially those produced under severe water stress condition, showed high weight losses, presenting poor keeping quality. However, application of GRs, especially SB, TU, and PN, reduced bulb weight losses together with maintaining slightly better bulb physicochemical properties, thereby improving the overall storage quality, particularly with a moderate level of water stress (0.69–0.40 IW:CPE). The exogenous application of GRs with moderate water stress is suggested as a key strategy in improving the keeping quality of onion bulbs and ensuring its availability during the lean season.

Minimizing the post-harvest losses in fruits and vegetables is one of the challenging tasks in agriculture. To address this issue, we report nano-net of Cu-chitosan nanoparticles (Cu-chitosan NPs) which has the ability to extend the shelf-life of stored tomato. The application of Cu-chitosan NPs (0.01–0.04%) significantly curtailed microbial decay (< 5 versus > 50% in control), physiological loss in weight (14.36 versus 28.13% in control), respiration rate (0.01173 versus 0.01879 g CO₂ kg⁻¹ h⁻¹) and maintained fruit firmness (34.0 versus 17.33 N in control) during storage. Further, these NPs significantly retarded loss of titratable acidity, retained total soluble solids, total and reducing sugars, lycopene, ascorbic acid and inhibited polyphenol oxidase. Likewise, NPs effectively preserved L^* (lightness), a* (red/green) and b* (blue/yellow) values and maintained organoleptic score. Scanning electron microscopy study confirmed that Cu-chitosan NPs orchestrate into an invisible-intangible nano-net over tomato surface which may plausibly act as a potential barrier at all possible openings (stem scar, cuticle wax, lenticels, and aquaporins) to control microbial infection, moisture loss, gas exchanges and respiration rate. Overall, nano-net extended keeping quality of tomatoes up to 21 days at room temperature (27 ± 2 °C, 55 ± 2% relative humidity).

Post-2005, the biology of the salt afflicted habitats is predominantly studied employing high throughput “Omic” approaches comprising metagenomics, transcriptomics, metatranscriptomics, metabolomics, and proteomics. Such “Omic-based” studies have deciphered the unfamiliar details about microbial salt-stress biology. The MAGs (Metagenome-assembled genomes) of uncultured halophilic microbial lineages such as Nanohaloarchaea and haloalkaliphilic members within CPR (Candidate Phyla Radiation) have been reconstructed from diverse hypersaline habitats. The study of MAGs of such uncultured halophilic microbial lineages has unveiled the genomic basis of salt stress tolerance in “yet to culture” microbial lineages. Furthermore, functional metagenomic approaches have been used to decipher the novel genes from uncultured microbes and their possible role in microbial salt-stress tolerance. The present review focuses on the new insights into microbial salt-stress biology gained through different “Omic” approaches. This review also summarizes the key molecular processes that underlie microbial salt-stress response, and their role in microbial salt-stress tolerance has been confirmed at more than one “Omic” levels.

The role of phospholipid modification initiated by phospholipase D (PLD) in enzymatic browning has been revoked through this study. Various alcohols and aldehydes were tried to read out their PLD controlling behaviour. Based on in-vitro results, reagents like hexanal and inositol were used to regulate PLD activity of litchi fruit stored at ambient temperature and their effects on fruit quality and physiological characteristics were also investigated. The results showed that combinatorial chemical treatment was successful in maintaining freshness of fruit through delayed physiological loss in weight and hence maintaining firmness. Combinatorial treated fruit had lower browning index than control by day 7. This novel treatment also maintained comparable levels of total phenolics and lowered the level of malondialdehyde. Evaluation of antioxidative enzymatic profile also confirmed the alleviation of oxidative stress of litchi fruit at ambient temperature. Thus, this strategy of enzyme regulation could play a vital role in overall quality maintenance of litchi fruit.

In recent years, metagenomics has emerged as a powerful tool for mining of hidden microbial treasure in a culture independent manner. In the last two decades, metagenomics has been applied extensively to exploit concealed potential of microbial communities from almost all sorts of habitats. A brief historic progress made over the period is discussed in terms of origin of metagenomics to its current state and also the discovery of novel biological functions of commercial importance from metagenomes of diverse habitats. The present review also highlights the paradigm shift of metagenomics from basic study of community composition to insight into the microbial community dynamics for harnessing the full potential of uncultured microbes with more emphasis on the implication of breakthrough developments, namely, Next Generation Sequencing, advanced bioinformatics tools, and systems biology.