Rakiba Rohman
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Previous Organizations / Institutes
The organizations / institutes from the scholar's other articles in the past ten years
Research Subjects
Rakiba Rohman has a total of 19 co-authors. Here are the top co-authors by number of shared publications:
- Rahul Kar
Department of Chemistry, Dibrugarh University, Dibrugarh, Assam 786004, India
3 shared publications - Neelanjana Sengupta
IISER Kolkata, India
2 shared publications - Aidan T. Pezacki
Department of Chemistry, Princeton University, Princeton, NJ, USA
1 shared publication - Amitava Das
Department of Chemical Sciences, Indian Institute of Science Education and Research, Kolkata, West Bengal 741246, India
1 shared publication - Arnab Gupta
Department of Biological Sciences Indian Institute of Science Education and Research Kolkata Mohanpur West Bengal India
1 shared publication - Arpan Narayan Roy
Department of Biological Sciences, Indian Institute of Science Education and Research Kolkata, Mohanpur, West Bengal 741246, India
1 shared publication
Latest Publications
- 26 May 2026
- Published by Royal Society of Chemistry (RSC) in Physical Chemistry Chemical Physics
- Vol. 28 (22) , 13408-13420
Calix[4]arenes in mixed protic media: conformational characteristics and solvent effects captured with molecular simulations
Methanol–water composition modulates solvation structure and dynamics around calix[4]tyrosols, with enhanced structuring in water-rich media and faster dynamics in methanol-rich mixtures, while conformational stability remains unchanged.
- 26 May 2026
- Published by Royal Society of Chemistry (RSC) in Physical Chemistry Chemical Physics
- Vol. 28 (22) , 13408-13420
Calix[4]arenes in mixed protic media: conformational characteristics and solvent effects captured with molecular simulations
Methanol–water composition modulates solvation structure and dynamics around calix[4]tyrosols, with enhanced structuring in water-rich media and faster dynamics in methanol-rich mixtures, while conformational stability remains unchanged.
- Open Access
Repurposing Melatonin in dual-mode for Wilson disease therapy as a Copper Chelator and an antioxidant agent
Loss-of-function mutations in copper-ATPase ATP7B underlie Wilson disease (WD), a disorder characterized by hepatic copper accumulation and severe hepato-neuropathology. Existing chelation therapeutics remove excess copper but lack intrinsic antioxidant capacity and frequently cause systemic toxicity. Here we evaluate melatonin, an FDA-approved indoleamine with antioxidant and putative metal-chelating activity, as a candidate therapeutic for WD. In ATP7B⁻ / ⁻ hepatocytes, melatonin restored copper-induced reactive oxygen species (ROS) to basal levels, reduced apoptosis twofold, and attenuated Nrf2 nuclear translocation leading to reduction of Hemoxygenase-1 abundance. Live-cell ratiometric analysis of GSSG/GSH using GRX1-roGFP2 expressed in melatonin-treated ATP7B⁻ / ⁻ hepatocytes revealed a significant reduction in intensity-ratio, indicating an effective mitigation of copper-induced glutathione oxidation. Isothermal calorimetric titration revealed moderate Cu 2+ affinity (K ITC =4.54 × 10³ M⁻¹), rationalized by MD-simulations showing an interaction energy of 18.5 × 10⁻³ kcal·mol⁻¹ via amide–Cu²⁺ coordination. In-cellulo studies also revealed that copper-induced vesicularized ATP7B reinstates to Golgi in melatonin-treated hepatocytes. In vivo , melatonin treatment reduced copper-induced oxidative stress in zebrafish embryos and lowered copper burden in Caenorhabditis elegans WD model. Our studies revealed that encapsulation of melatonin within an engineered polymeric nanocapsules having dithiol linkers, susceptible to cleavage by GSH, extended melatonin’s circulatory half-life ten-fold and enhanced its ROS-scavenging efficacy three-fold relative to free melatonin. This work introduces a unique dual-function therapeutic strategy that integrates antioxidant activity with copper chelation, simultaneously addressing copper overload and redox imbalance. Repurposing melatonin, with its established clinical safety, offers rapid and cost-effective translational pathway toward WD-therapy while providing a generalizable platform for redox- and metal-associated disorders.
Open AccessRepurposing Melatonin in dual-mode for Wilson disease therapy as a Copper Chelator and an antioxidant agent
Loss-of-function mutations in copper-ATPase ATP7B underlie Wilson disease (WD), a disorder characterized by hepatic copper accumulation and severe hepato-neuropathology. Existing chelation therapeutics remove excess copper but lack intrinsic antioxidant capacity and frequently cause systemic toxicity. Here we evaluate melatonin, an FDA-approved indoleamine with antioxidant and putative metal-chelating activity, as a candidate therapeutic for WD. In ATP7B⁻ / ⁻ hepatocytes, melatonin restored copper-induced reactive oxygen species (ROS) to basal levels, reduced apoptosis twofold, and attenuated Nrf2 nuclear translocation leading to reduction of Hemoxygenase-1 abundance. Live-cell ratiometric analysis of GSSG/GSH using GRX1-roGFP2 expressed in melatonin-treated ATP7B⁻ / ⁻ hepatocytes revealed a significant reduction in intensity-ratio, indicating an effective mitigation of copper-induced glutathione oxidation. Isothermal calorimetric titration revealed moderate Cu 2+ affinity (K ITC =4.54 × 10³ M⁻¹), rationalized by MD-simulations showing an interaction energy of 18.5 × 10⁻³ kcal·mol⁻¹ via amide–Cu²⁺ coordination. In-cellulo studies also revealed that copper-induced vesicularized ATP7B reinstates to Golgi in melatonin-treated hepatocytes. In vivo , melatonin treatment reduced copper-induced oxidative stress in zebrafish embryos and lowered copper burden in Caenorhabditis elegans WD model. Our studies revealed that encapsulation of melatonin within an engineered polymeric nanocapsules having dithiol linkers, susceptible to cleavage by GSH, extended melatonin’s circulatory half-life ten-fold and enhanced its ROS-scavenging efficacy three-fold relative to free melatonin. This work introduces a unique dual-function therapeutic strategy that integrates antioxidant activity with copper chelation, simultaneously addressing copper overload and redox imbalance. Repurposing melatonin, with its established clinical safety, offers rapid and cost-effective translational pathway toward WD-therapy while providing a generalizable platform for redox- and metal-associated disorders.
- 21 June 2022
- Published by Wiley in ChemistrySelect
- Vol. 7 (24)
Hybrid Molecules of Hydroxycinnamic and Hydroxybenzoic Acids as Antioxidant and Potential Drug: A DFT Study
Due to the disruption of homeostasis, the amount of free radicals produced may increase during metabolic processes leading to oxidative stress and may cause numerous diseases. Antioxidant prevents oxidative stress. Here, we have designed twenty hybrid antioxidant molecules which are also potential drugs. These molecules are mainly hybrids of hydroxybenzoic acids and hydroxycinnamic acids. At first, we have carried out a conformational analysis to find out the most stable structure of the molecules. Conformational studies are performed with the MP2 method. Thereafter, the physicochemical parameters are calculated, showing that these molecules are probable antioxidants. Further, we have investigated the free radical scavenging capacity of these molecules for inactivating eight prototype oxyradicals. The scavenging capacity was estimated by considering Gibbs free energy for the three mechanisms, viz. HAT, SPLET, and SET‐PT. Our study on mechanisms shows that for these molecules HAT and SPLET are favorable in the gas phase, while in solvent medium HAT and SET‐PT are competitive. An empirical rule for combining such hydroxycinnamic and hydroxybenzoic acids is proposed. In addition, the druglikeness of the molecules is calculated using Lipinski's rule of five. The advantage of our set of designed hybrid molecules is that they show antioxidant behavior with pharmacophoric characteristics. Thus, the set of promising antioxidants with drug‐like properties could create new prospects in drug discovery.
- 21 June 2022
- Published by Wiley in ChemistrySelect
- Vol. 7 (24)
Hybrid Molecules of Hydroxycinnamic and Hydroxybenzoic Acids as Antioxidant and Potential Drug: A DFT Study
Due to the disruption of homeostasis, the amount of free radicals produced may increase during metabolic processes leading to oxidative stress and may cause numerous diseases. Antioxidant prevents oxidative stress. Here, we have designed twenty hybrid antioxidant molecules which are also potential drugs. These molecules are mainly hybrids of hydroxybenzoic acids and hydroxycinnamic acids. At first, we have carried out a conformational analysis to find out the most stable structure of the molecules. Conformational studies are performed with the MP2 method. Thereafter, the physicochemical parameters are calculated, showing that these molecules are probable antioxidants. Further, we have investigated the free radical scavenging capacity of these molecules for inactivating eight prototype oxyradicals. The scavenging capacity was estimated by considering Gibbs free energy for the three mechanisms, viz. HAT, SPLET, and SET‐PT. Our study on mechanisms shows that for these molecules HAT and SPLET are favorable in the gas phase, while in solvent medium HAT and SET‐PT are competitive. An empirical rule for combining such hydroxycinnamic and hydroxybenzoic acids is proposed. In addition, the druglikeness of the molecules is calculated using Lipinski's rule of five. The advantage of our set of designed hybrid molecules is that they show antioxidant behavior with pharmacophoric characteristics. Thus, the set of promising antioxidants with drug‐like properties could create new prospects in drug discovery.
- 19 June 2018
- Published by Springer Nature in Journal of Molecular Modeling
- Vol. 24 (7) , 1-10
How does the presence of an oxyradical influence the behavior of polyphenolic antioxidant? A case study on gallic acid
Polyphenolic antioxidants are an integral component of the present-day lifestyle due to growing environmental and pollution-related issues. Gallic acid (GA), a popular polyphenolic antioxidant, is widely distributed in different fruits and vegetables. It scavenges free radicals mostly through the hydrogen atom transfer (HAT) mechanism. The present work reports a fundamental understanding of the atom transfer involved in the antioxidant activity of GA in the presence of prototype oxyradicals. In this article, the behavior of GA in the presence of three prototype oxyradicals, based on the availability in biological systems, viz. hydroxyl (•OH), hydroperoxyl (•OOH), and methyl peroxyl (•OOMe) is studied. On radical scavenging, a sharp change in the structural, electronic, and thermodynamic properties of GA is observed. Finally, a new descriptor based on chemical hardness, which describes the stability of the antioxidant molecule during a HAT reaction, is also proposed. The present work reports a fundamental understanding of the atom transfer involved in antioxidant activity of gallic acid in presence of prototype oxyradicals
- 19 June 2018
- Published by Springer Nature in Journal of Molecular Modeling
- Vol. 24 (7) , 1-10
How does the presence of an oxyradical influence the behavior of polyphenolic antioxidant? A case study on gallic acid
Polyphenolic antioxidants are an integral component of the present-day lifestyle due to growing environmental and pollution-related issues. Gallic acid (GA), a popular polyphenolic antioxidant, is widely distributed in different fruits and vegetables. It scavenges free radicals mostly through the hydrogen atom transfer (HAT) mechanism. The present work reports a fundamental understanding of the atom transfer involved in the antioxidant activity of GA in the presence of prototype oxyradicals. In this article, the behavior of GA in the presence of three prototype oxyradicals, based on the availability in biological systems, viz. hydroxyl (•OH), hydroperoxyl (•OOH), and methyl peroxyl (•OOMe) is studied. On radical scavenging, a sharp change in the structural, electronic, and thermodynamic properties of GA is observed. Finally, a new descriptor based on chemical hardness, which describes the stability of the antioxidant molecule during a HAT reaction, is also proposed. The present work reports a fundamental understanding of the atom transfer involved in antioxidant activity of gallic acid in presence of prototype oxyradicals
- 8 September 2015
- Published by Royal Society of Chemistry (RSC) in RSC Advances
- Vol. 5 (95) , 78229-78237
Antioxidant properties can be tuned in the presence of an external electric field: accurate computation of O–H BDE with range-separated density functionals
The effect of external electric field on the antioxidant properties of gallic and caffeic acids is studied. The performance of range-separated functionals in reproducing the O–H BDE is tested in the presence of an external electric field.
- 8 September 2015
- Published by Royal Society of Chemistry (RSC) in RSC Advances
- Vol. 5 (95) , 78229-78237
Antioxidant properties can be tuned in the presence of an external electric field: accurate computation of O–H BDE with range-separated density functionals
The effect of external electric field on the antioxidant properties of gallic and caffeic acids is studied. The performance of range-separated functionals in reproducing the O–H BDE is tested in the presence of an external electric field.