David Álvarez

The study of colour, including physical properties and patterns, is an essential step in comprehensively understanding the role, evolution and diversification of this trait involved in functions like survival, performance, reproductive success and communication. While quantitative studies on colour have primarily focused on colour attributes, such as hue or brightness, the quantitative assessment of how colours are distributed across an organism's body (i.e. pattern) has received less attention despite its high functionality irrespective and together with colour. This gap is particularly noticeable in amphibians, especially in highly polymorphic, continuously variable species. In this study, we use the urodele Salamandra salamandra as a study model to apply an analytical approach for extracting and quantifying colour proportions and patterns variation using the recently developed R packages patternize and recolorize to precisely describe and compare colour distribution at both taxonomic and habitat levels. We first assessed the potential application of this workflow in taxonomic studies by examining its accuracy and sensitivity in differentiating morphs, using S. s. bernardezi and S. s. gallaica subspecies. Subsequently, we applied the same analytical approach to compare colour and colour pattern shifts among population of S. s. bernardezi within an urban–forest system. Our results demonstrated that this methodological workflow effectively detects differences in colour patterns at the taxonomic and habitat levels, confirming its utility in different fields, from systematics to eco‐evolutionary studies. Furthermore, our results revealed an increased prevalence of melanistic colouration and a less homogeneous colour pattern within urban settings, contributing to the limited number of studies about amphibian colouration in anthropic habitats. We outline and discuss alternative hypotheses to explain these patterns, although further investigation is necessary to address several new questions that arise from our results.

The environmental transformations associated with cities are expected to affect organisms at the demographic, phenotypic, and evolutionary level, often negatively. The prompt detection of stressed populations before their viability is compromised is essential to understand species’ responses to novel conditions and to integrate urbanization with biodiversity preservation. The presumably stressful conditions of urban environments are expected to affect organisms’ developmental pathways, resulting in a reduction of the efficacy of developmental stability and canalization processes, which can be observed as increased Fluctuating Asymmetry (FA) and Phenotypic Variance (PV), respectively. Here, we investigated whether patterns of phenotypic variation of urban populations of a fully terrestrial salamander, Salamandra salamandra bernardezi, are affected by urban settings compared to surrounding native forest populations. We sampled populations within and around the city of Oviedo (northern Spain) and used geometric morphometrics to compare morphological differentiation, head shape deviance from the allometric slope, PV, and FA. We also compared morphological patterns with neutral genetic and structure patterns. We observed increased levels of differentiation among urban populations and in PV within certain of them, yet no differences in allometric deviance and FA were detected between habitats, and no morphological measures were found to be correlated with genetic traits. Our results do not support a clear negative impact of urban conditions over salamander populations, but rather suggest that other ecological and evolutionary local processes influence morphological variation in this urban system.

La renaturalización pasiva, o recuperación de los ecosistemas tras el abandono del uso humano del territorio, representa una oportunidad para restaurar biodiversidad y servicios ecosistémicos en un contexto de crisis ambiental global. No obstante, también puede provocar declive de determinadas especies, cambios en los regímenes de perturbación o pérdidas de valores culturales. Esta revisión integra el conocimiento actual sobre patrones y procesos ecológicos de renaturalización pasiva en la Cordillera Cantábrica (NO España) para generar una primera base de evidencia sobre la que apoyar la gestión ambiental. Se observa un patrón de recuperación de bosques y matorrales en áreas anteriormente ocupadas por pastizales ganaderos y campos agrícolas, que implica cambios en la estructura del paisaje, la riqueza y la composición de las comunidades ecológicas, la acumulación de carbono en biomasa y suelos, y la provisión de diferentes servicios ecosistémicos. Los procesos que modulan la renaturalización son: 1) la dispersión de organismos, que condiciona la sucesión ecológica y la persistencia de especies a escala regional; 2) las dinámicas tróficas, cuyo funcionamiento depende de la presencia de grandes depredadores apicales y de la estructura del paisaje; y 3) los regímenes de perturbaciones ecológicas, actualmente dominados por la ganadería y los incendios antropogénicos. Por sus efectos ecológicos, la renaturalización pasiva representa una estrategia efectiva de restauración de ecosistemas y sus funciones clave en la Cordillera Cantábrica. Su aceptación social dependerá de la compatibilización de este proceso con el uso ganadero y ecoturístico del territorio, así como de la eficacia de las políticas conservacionistas, agrarias y forestales.

Timing of breeding, an important driver of fitness in many populations, is widely studied in the context of global change, yet despite considerable efforts to identify environmental drivers of seabird nesting phenology, for most populations we lack evidence of strong drivers. Here we adopt an alternative approach, examining the degree to which different populations positively covary in their annual phenology to infer whether phenological responses to environmental drivers are likely to be (a) shared across species at a range of spatial scales, (b) shared across populations of a species or (c) idiosyncratic to populations. We combined 51 long‐term datasets on breeding phenology spanning 50 years from nine seabird species across 29 North Atlantic sites and examined the extent to which different populations share early versus late breeding seasons depending on a hierarchy of spatial scales comprising breeding site, small‐scale region, large‐scale region and the whole North Atlantic. In about a third of cases, we found laying dates of populations of different species sharing the same breeding site or small‐scale breeding region were positively correlated, which is consistent with the hypothesis that they share phenological responses to the same environmental conditions. In comparison, we found no evidence for positive phenological covariation among populations across species aggregated at larger spatial scales. In general, we found little evidence for positive phenological covariation between populations of a single species, and in many instances the inter‐year variation specific to a population was substantial, consistent with each population responding idiosyncratically to local environmental conditions. Black‐legged kittiwakeRissa tridactylawas the exception, with populations exhibiting positive covariation in laying dates that decayed with the distance between breeding sites, suggesting that populations may be responding to a similar driver. Our approach sheds light on the potential factors that may drive phenology in our study species, thus furthering our understanding of the scales at which different seabirds interact with interannual variation in their environment. We also identify additional systems and phenological questions to which our inferential approach could be applied.

Amphibians are subjected to an assortment of environmental stressors responsible for their population declines and malformations. Deciphering the underlying causes of amphibian deformities is challenging due to the complex nature and interplay among factors. We evaluated morphological deformities in 9 urban and 9 woodland populations of terrestrial-breeding fire salamanders. We report several types of malformations and higher incidences among urban populations. This model system allowed us to tease apart some of the common factors responsible for amphibian deformations, suggesting airborne/terrestrial pollutants, predation, and/or inbreeding as potential environmental stressors. Yet, the putative underlying factors of fire salamander deformities need to be properly addressed in thorough studies linking habitat quality and the prevalence of morphological abnormalities, as well as predator-prey interactions. Reporting deformation rates among amphibians is key to identify warning signals of population declines and preventing local extinctions.

Environmental drivers, including anthropogenic impacts, affect vital rates of organisms. Nevertheless, the influence of these drivers may depend on the physical features of the habitat and how they affect life history strategies depending on individual covariates such as age and sex. Here, the long‐term monitoring (1994–2014) of marked European Shags in eight colonies in two regions with different ecological features, such as foraging habitat, allowed us to test several biological hypotheses about how survival changes by age and sex in each region by means of multi‐event capture–recapture modeling. Impacts included fishing practices and bycatch, invasive introduced carnivores and the severe Prestige oil spill. Adult survival was constant but, unexpectedly, it was different between sexes. This difference was opposite in each region. The impact of the oil spill on survival was important only for adults (especially for females) in one region and lasted a single year. Juvenile survival was time dependent but this variability was not synchronized between regions, suggesting a strong signal of regional environmental variability. Mortality due to bycatch was also different between sex, age and region. Interestingly the results showed that the size of the fishing fleet is not necessarily a good proxy for assessing the impact of bycatch mortality, which may be more dependent on the fishing grounds and the fishing gears employed in each season of the year. Anthropogenic impacts affected survival differently by age and sex, which was expected for a long‐lived organism with sexual size dimorphism. Strikingly, these differences varied depending on the region, indicating that habitat heterogeneity is demographically important to how environmental variability (including anthropogenic impacts) and resilience influence population dynamics.

Urbanization is a severe form of habitat fragmentation that can cause many species to be locally extirpated and many others to become trapped and isolated within an urban matrix. The role of drift in reducing genetic diversity and increasing genetic differentiation is well recognized in urban populations. However, explicit incorporation and analysis of the demographic and temporal factors promoting drift in urban environments are poorly studied. Here, we genotyped 15 microsatellites in 320 fire salamanders from the historical city of Oviedo (Est. 8th century) to assess the effects of time since isolation, demographic history (historical effective population size; N_e) and patch size on genetic diversity, population structure and contemporary N_e. Our results indicate that urban populations of fire salamanders are highly differentiated, most likely due to the recent N_e declines, as calculated in coalescence analyses, concomitant with the urban development of Oviedo. However, urbanization only caused a small loss of genetic diversity. Regression modelling showed that patch size was positively associated with contemporary N_e, while we found only moderate support for the effects of demographic history when excluding populations with unresolved history. This highlights the interplay between different factors in determining current genetic diversity and structure. Overall, the results of our study on urban populations of fire salamanders provide some of the very first insights into the mechanisms affecting changes in genetic diversity and population differentiation via drift in urban environments, a crucial subject in a world where increasing urbanization is forecasted.

Summary: World‐wide, many seabirds are affected by fisheries in opposing ways: as a source of mortality from bycatch, but also by providing discards as a predictable and abundant food resource. This applies to the Balearic shearwater Puffinus mauretanicus, the most endangered European seabird, whose time to extinction was estimated at only ˜40 years a decade ago. Since the previous assessment, new data and more sophisticated demographic modelling have become available, and new fishing policies from the European Union (Common Fisheries Policy, CFP) will apply, posing different scenarios for the viability of the species. Thus, there is both an urgent need and an opportunity for a more reliable update of the conservation status of the species. Demographic data were collected between 1985 and 2014 at one of the world's largest colonies. Most demographic parameters were estimated using multievent capture–recapture modelling. Some parameters, such as bycatch rate, immature individual survival and recruitment, were estimated for the first time. We incorporated estimates into stochastic population models to forecast time to extinction and assess the viability under different management scenarios, accounting for upcoming fishing policies. Adult survival was much lower than expected (0·809, SE: 0·013) and largely influenced by bycatch, which accounted for a minimum of 0·455 (SE: 0·230) of total mortality. Breeding success was positively correlated with discard availability. Recruitment started at low rates in 3‐year‐old birds (0·030, SE: 0·0455), increasing in following age classes and was almost complete at 6 years. Under the present scenario, we predict a time to extinction of 61 years (95% CI: 55–69). Synthesis and applications. Population projections suggest that the actual impact of fisheries on Balearic shearwaters is unsustainable and the imminent discard ban under the new Common Fisheries Policy may accelerate the declining trend. This study demonstrates that reducing the bycatch rates of fisheries is an unavoidable and urgent conservation measure for avoiding the extinction of the species. We also advise setting up demographic long‐term studies, to allow researchers to diagnose, with reliability, the effectiveness of management actions. These actions will also benefit many other marine top‐predator species affected by this anthropogenic impact.