Maria Saggiomo

The NEREA (Naples Ecological REsearch for Augmented observatories) initiative aims to establish an augmented observatory in the Gulf of Naples (GoN), designed to advance the understanding of marine ecosystems through a holistic approach. Inspired by the Tara Oceans expedition and building on the scientific legacy of the MareChiara Long-Term Ecological Research (LTER-MC) site, NEREA integrates traditional physical, chemical, and biological measurements with state-of-the-art methodologies such as metabarcoding and metagenomics. Here we present the first 10 months of NEREA data, collected from April 2019 to January 2020, encompassing physico-chemical parameters, plankton biodiversity (e.g., microscopy and flow cytometry), prokaryotic and eukaryotic metabarcoding, a prokaryotic gene catalogue, and a collection of 3818 prokaryotic Metagenome-Assembled Genomes (MAGs). NEREA’s efforts produce a significant volume of multifaceted data, which enhances our understanding of marine ecosystems and promotes the development of scientific hypotheses and ideas.

Climate changes may include variations in salinity concentrations at sea by changing ocean dynamics. These variations may be especially challenging for marine photosynthetic organisms, affecting their growth and distribution. Chlamydomonas spp. are ubiquitous and are often found in extreme salinity conditions. For this reason, they are considered good model species to study salinity adaptation strategies. In the current study, we used an integrated approach to study the Chlamydomonas sp. CCMP225 response to salinities of 20‰ and 70‰, by combining physiological, morphological, and transcriptomic analyses, and comparing differentially expressed genes in the exponential and stationary growth phases under the two salinity conditions. The results showed that the strain is able to grow under all tested salinity conditions and maintains a surprisingly high photosynthetic efficiency even under high salinities. However, at the highest salinity condition, the cells lose their flagella. The transcriptomic analysis highlighted the up- or down-regulation of specific gene categories, helping to identify key genes responding to salinity stress. Overall, the findings may be of interest to the marine biology, ecology, and biotechnology communities, to better understand species adaptation mechanisms under possible global change scenarios and the potential activation of enzymes involved in the synthesis of bioactive molecules.

Copepods dominate marine zooplankton in abundance and play key roles in pelagic food webs. These small crustaceans show high taxonomic and functional diversity. Although there has been considerable research on their taxonomy, only a few studies have focused on their functional traits. In this study, we analyzed the functional traits of 95 copepod species, considering their body size, trophic regime, feeding behavior, and spawning strategy. Based on samples collected during two surveys (autumn 2020 and summer 2021) located in the coastal waters of three gulfs (Gaeta, Naples, and Salerno) in the highly populated Campania region (the central Tyrrhenian Sea, NW Mediterranean), we identified nine functional groups of copepods with different characteristics. The group that comprised herbivorous copepods with feeding currents and a broadcast strategy was the most abundant in both seasons and all gulfs. This group was dominated by Acartia clausi, Centropages typicus, Temora stylifera, and the Paracalanus parvus complex. The other functional groups showed differences in their temporal and spatial distribution. Our study reports the functional diversity of copepods along the Campania coast, thus contributing to advancing our knowledge of the planktonic trophic structure in a region of considerable importance due to its marine resources and services.

Cold environments include deep ocean, alpine, and polar areas. Even if the cold conditions are harsh and extreme for certain habitats, various species have been adapted to survive in them. Microalgae are among the most abundant microbial communities which have adapted to live in low light, low temperature, and ice coverage conditions typical of cold environments by activating different stress-responsive strategies. These species have been shown to have bioactivities with possible exploitation capabilities for human applications. Even if they are less explored compared to species living in more accessible sites, various activities have been highlighted, such as antioxidant and anticancer activities. This review is focused on summarizing these bioactivities and discussing the possible exploitation of cold-adapted microalgae. Thanks to the possibility of mass cultivating algae in controlled photobioreactors, eco-sustainable exploitation is in fact possible by sampling a few microalgal cells without impacting the environment.

The rapid response of phytoplankton communities to environmental changes makes this compartment one of the most important biological variable to consider in dealing with ecology and trophodynamic of coastal areas, especially in relation with ongoing climate changes and increased human pressures. In the last 30 years, the use of chemotaxonomy has improved the capability to detect phytoplankton community composition in terms of chemofunctional groups, especially for small size species requiring specific expertise and techniques, as well as time‐consuming observation with light microscope. In this study, the temporal variability of chemotaxonomic functional groups has been investigated in surface waters of a LTER station in the Gulf of Naples over 12‐year weekly sampling activities (2003–2015). Data reveal increasing trends in the percentage contribution of diatoms, prasinophytes, cryptophytes to the total phytoplankton biomass, while other groups show a decreasing trend. Nevertheless, strong differences in the intervals of periodicity for each chemofunctional group have emerged, both in terms of timescale and strength of periodicity over time, implying that temporal dynamics of groups were not stationary over the time and that they have different relationships with environmental variability. Our results contribute to enrich scientific knowledge on the ecology of this LTER site and underline the importance of chemotaxonomy as a monitoring tool in coastal marine systems.

The Antarctic Circumpolar Current (ACC) is the major current in the Southern Ocean, isolating the warm stratified subtropical waters from the more homogeneous cold polar waters. The ACC flows from west to east around Antarctica and generates an overturning circulation by fostering deep-cold water upwelling and the formation of new water masses, thus affecting the Earth’s heat balance and the global distribution of carbon. The ACC is characterized by several water mass boundaries or fronts, known as the Subtropical Front (STF), Subantarctic Front (SAF), Polar Front (PF), and South Antarctic Circumpolar Current Front (SACCF), identified by typical physical and chemical properties. While the physical characteristics of these fronts have been characterized, there is still poor information regarding the microbial diversity of this area. Here we present the surface water bacterioplankton community structure based on 16S rRNA sequencing from 13 stations sampled in 2017 between New Zealand to the Ross Sea crossing the ACC Fronts. Our results show a distinct succession in the dominant bacterial phylotypes present in the different water masses and suggest a strong role of sea surface temperatures and the availability of Carbon and Nitrogen in controlling community composition. This work represents an important baseline for future studies on the response of Southern Ocean epipelagic microbial communities to climate change.

Primary production in the Southern Ocean highly depends on phytoplankton and has been reported to be limited by the availability of the micronutrient iron. The aim of this review is to summarize the past and current knowledge on iron limitation in the Southern Ocean, and specifically how it affects primary producers, thus influencing the whole Southern Ocean community structure, carbon cycling, and large-scale ocean biogeochemistry. In this region, extensive variability exists between different areas regarding iron availability, but also between seasons. Moreover, co-limitations with other abiotic environmental factors exist, further complicating the assessment of the role of iron as limiting factor for phytoplankton productivity. Currently, climate change is altering the Southern Ocean environment. How these changes will affect resident phytoplankton is still not clear, possibly modifying the iron supply mechanisms. Existing projections point towards a possible partial relief of iron stress on phytoplankton, but the interactions between different environmental changes, and the cascade effects they will have, are still poorly understood, and some aspects understudied. Here we try to synthetize the available predictions and uncertainties concerning this topic.

Sea ice is a major driver of biological activity in the Southern Ocean. Its cycle of growth and decay determines life history traits; food web interactions; and populations of many small, ice-associated organisms. The regional ocean modelling system (ROMS) for sea ice in the western Ross Sea has highlighted two modes of sea ice duration: fast-melting years when water temperature warms quickly in early spring and sea ice melts out in mid-November, and slow-melting years when water temperature remains below 0 °C and sea ice persists through most of December. Ice-associated and pelagic biota in Terra Nova Bay, Ross Sea, were studied intensively over a 3-week period in November 1997 as part of the PIPEX (Pack-Ice Plankton Experiment) campaign. The sea ice environment in November 1997 exhibited features of a slow-melting year, and the ice cover measured 0.65 m in late November. Phytoplankton abundance and diversity increased in the second half of November, concomitant with warming air and water temperatures, melting sea ice and progressive deepening of a still weak pycnocline. Water column phytoplankton was dominated by planktonic species, both in abundance and diversity, although there was also some input from benthic species. Pelagic zooplankton were typical of a nearshore Antarctic system, with the cyclopoid copepod Oithona similis representing at least 90% of total abundance. There was an increase in numbers coinciding with the period of ice thinning. Conversely, ice-associated species such as the calanoid copepods Stephos longipes and Paralabidocera antarctica decreased over time and were found in low numbers once the water temperatures increased. Stratified sampling under the sea ice, to 20 m, revealed that P. antarctica was mainly found in close association with the under-ice surface, while S. longipes, O. similis, and the calanoid copepod Metridia gerlachei were dispersed more evenly.

Salinity is among the main drivers affecting growth and distribution of photosynthetic organisms as Chlamydomonas spp. These species can live in multiple environments, including polar regions, and have been frequently studied for their adaptation to live at different salinity gradients. Upon salinity stress (hypersalinity is the most studied), Chlamydomonas spp. were found to alter their metabolism, reduce biomass production (growth), chlorophyll content, photosynthetic activity, and simultaneously increasing radical oxygen species production as well as lipid and carotenoid contents. This review summarizes the current literature on salt stress related studies on the green algae from the genus Chlamydomonas considering physiological and molecular aspects. The overall picture emerging from the data suggests the existence of common features of the genus in response to salinity stress, as well as some differences peculiar to single Chlamydomonas species. These differences were probably linked to the different morphological characteristics of the studied algae (e.g., with or without cell wall) or different sampling locations and adaptations. On the other hand, molecular data suggest the presence of common reactions, key genes, and metabolic pathways that can be used as biomarkers of salt stress in Chlamydomonas spp., with implications for future physiological and biotechnological studies on microalgae and plants.

The Arctic and Antarctic regions constitute 14% of the total biosphere. Although they differ in their physiographic characteristics, both are strongly affected by snow and ice cover changes, extreme photoperiods and low temperatures, and are still largely unexplored compared to more accessible sites. This review focuses on microalgae and bacteria from polar marine environments and, in particular, on their physiological and molecular responses to harsh environmental conditions. The data reported in this manuscript show that exposure to cold, increase in CO₂ concentration and salinity, high/low light, and/or combination of stressors induce variations in species abundance and distribution for both polar bacteria and microalgae, as well as changes in growth rate and increase in cryoprotective compounds. The use of -omics techniques also allowed to identify specific gene losses and gains which could have contributed to polar environmental adaptation, and metabolic shifts, especially related to lipid metabolism and defence systems, such as the up-regulation of ice binding proteins, chaperones and antioxidant enzymes. However, this review also provides evidence that -omics resources for polar species are still few and several sequences still have unknown functions, highlighting the need to further explore polar environments, the biology and ecology of the inhabiting bacteria and microalgae, and their interactions.