Lei Liu
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Research Subjects
Lei Liu has a total of 22 co-authors. Here are the top co-authors by number of shared publications:
- Fan Huang
Institute of grassland research, Chinese Academy of Agricultural Science, Hohhot, China
3 shared publications - Xiaojing Qiang
Institute of Grassland Research, Chinese Academy of Agricultural Sciences, Hohhot 100081, China
3 shared publications - Xiuzheng Huang
Institute of Grassland Research, Chinese Academy of Agricultural Sciences, Hohhot 100081, China
3 shared publications - Zhiyong Li
Institute of Grassland Research, Chinese Academy of Agricultural Sciences, Hohhot 100081, China
3 shared publications - Yuanfa Meng
Institute of Grassland Research, Chinese Academy of Agricultural Sciences, Hohhot 100081, China
2 shared publications - Bu Ning
Institute of Grassland Research, Chinese Academy of Agricultural Sciences, Hohhot 010010, China
1 shared publication
Latest Publications
- Open Access
- 26 June 2025
- Published by Pensoft Publishers in PhytoKeys
- Vol. 259, 103-109
Stellaria yabulaiensis (Caryophyllaceae), a new species from Inner Mongolia, China
Stellaria yabulaiensis (Caryophyllaceae), a new species from Inner Mongolia, China, is described and depicted with photographic illustrations. It is similar to S. bistyla, from which differs in its slender fibrous root, longer leaves and pedicel, occurrence of three styles, and more seeds. A morphological comparison among the new species and the similar ones is also provided.
- 26 June 2025
- Published by Pensoft Publishers in PhytoKeys
- Vol. 259, 103-109
Open AccessStellaria yabulaiensis (Caryophyllaceae), a new species from Inner Mongolia, China
Stellaria yabulaiensis (Caryophyllaceae), a new species from Inner Mongolia, China, is described and depicted with photographic illustrations. It is similar to S. bistyla, from which differs in its slender fibrous root, longer leaves and pedicel, occurrence of three styles, and more seeds. A morphological comparison among the new species and the similar ones is also provided.
- Open Access
In-Depth Exploration of the Coloration Mechanism of Iris dichotoma Pall. via Transcriptomic and Metabolomic Analyses
Iris dichotoma Pall., renowned for its high ornamental value, is frequently cultivated in flowerbeds and courtyards, endowing garden landscapes with unique allure. Dark-hued flowers are widely regarded as more aesthetically appealing. This study utilized the petals of two distinct Iris dichotoma Pall. phenotypes as research materials to investigate the underlying mechanism of flower color formation. The purple-flowered Iris dichotoma Pall. was designated as Group P, and the white-flowered one as Group W. A comprehensive integrative analysis of the transcriptome and metabolome of the two petal types was carried out. Metabolomic analysis revealed that the contents of several anthocyanin derivatives, including delphinidin, petunidin, malvidin, peonidin, and procyanidin, were significantly higher in purple petals compared to white petals, with delphinidin exhibiting the highest content. The transcriptomic analysis detected 6731 differentially expressed genes (DEGs) between the white and purple petal types. Specifically, 3596 genes showed higher expression levels in purple petals, while 3135 genes exhibited lower expression levels in purple petals compared to white petals. Ten phenylalanine ammonia-lyase (PAL) genes, two chalcone synthase (CHS) genes, one anthocyanidin reductase (ANR) gene, one 4-coumarate-CoA ligase (4CL) gene, one dihydroflavonol 4-reductase (DFR) gene, one flavanone 3′-hydroxylase (F3′H) gene, and one flavonol synthase (FLS) gene were identified; they all had purple petals displaying higher expression levels than white petals. This research uncovers the potential formation mechanism of anthocyanins in the two Iris dichotoma Pall. types, thereby furnishing a theoretical foundation for floral breeding endeavors.
Open AccessIn-Depth Exploration of the Coloration Mechanism of Iris dichotoma Pall. via Transcriptomic and Metabolomic Analyses
Iris dichotoma Pall., renowned for its high ornamental value, is frequently cultivated in flowerbeds and courtyards, endowing garden landscapes with unique allure. Dark-hued flowers are widely regarded as more aesthetically appealing. This study utilized the petals of two distinct Iris dichotoma Pall. phenotypes as research materials to investigate the underlying mechanism of flower color formation. The purple-flowered Iris dichotoma Pall. was designated as Group P, and the white-flowered one as Group W. A comprehensive integrative analysis of the transcriptome and metabolome of the two petal types was carried out. Metabolomic analysis revealed that the contents of several anthocyanin derivatives, including delphinidin, petunidin, malvidin, peonidin, and procyanidin, were significantly higher in purple petals compared to white petals, with delphinidin exhibiting the highest content. The transcriptomic analysis detected 6731 differentially expressed genes (DEGs) between the white and purple petal types. Specifically, 3596 genes showed higher expression levels in purple petals, while 3135 genes exhibited lower expression levels in purple petals compared to white petals. Ten phenylalanine ammonia-lyase (PAL) genes, two chalcone synthase (CHS) genes, one anthocyanidin reductase (ANR) gene, one 4-coumarate-CoA ligase (4CL) gene, one dihydroflavonol 4-reductase (DFR) gene, one flavanone 3′-hydroxylase (F3′H) gene, and one flavonol synthase (FLS) gene were identified; they all had purple petals displaying higher expression levels than white petals. This research uncovers the potential formation mechanism of anthocyanins in the two Iris dichotoma Pall. types, thereby furnishing a theoretical foundation for floral breeding endeavors.
- Open Access
Integrative Metabolomic and Transcriptomic Analysis Elucidates That the Mechanism of Phytohormones Regulates Floral Bud Development in Alfalfa
Floral bud growth influences seed yield and quality; however, the molecular mechanism underlying the development of floral buds in alfalfa (Medicago sativa) is still unclear. Here, we comprehensively analyzed the transcriptome and targeted metabolome across the early, mid, and late bud developmental stages (D1, D2, and D3) in alfalfa. The metabolomic results revealed that gibberellin (GA), auxin (IAA), cytokinin (CK), and jasmonic acid (JA) might play an essential role in the developmental stages of floral bud in alfalfa. Moreover, we identified some key genes associated with GA, IAA, CK, and JA biosynthesis, including CPS, KS, GA20ox, GA3ox, GA2ox, YUCCA6, amid, ALDH, IPT, CYP735A, LOX, AOC, OPR, MFP2, and JMT. Additionally, many candidate genes were detected in the GA, IAA, CK, and JA signaling pathways, including GID1, DELLA, TF, AUX1, AUX/IAA, ARF, GH3, SAUR, AHP, B-ARR, A-ARR, JAR1, JAZ, and MYC2. Furthermore, some TFs related to flower growth were screened in three groups, such as AP2/ERF-ERF, MYB, MADS-M-type, bHLH, NAC, WRKY, HSF, and LFY. The findings of this study revealed the potential mechanism of floral bud differentiation and development in alfalfa and established a theoretical foundation for improving the seed yield of alfalfa.
Open AccessIntegrative Metabolomic and Transcriptomic Analysis Elucidates That the Mechanism of Phytohormones Regulates Floral Bud Development in Alfalfa
Floral bud growth influences seed yield and quality; however, the molecular mechanism underlying the development of floral buds in alfalfa (Medicago sativa) is still unclear. Here, we comprehensively analyzed the transcriptome and targeted metabolome across the early, mid, and late bud developmental stages (D1, D2, and D3) in alfalfa. The metabolomic results revealed that gibberellin (GA), auxin (IAA), cytokinin (CK), and jasmonic acid (JA) might play an essential role in the developmental stages of floral bud in alfalfa. Moreover, we identified some key genes associated with GA, IAA, CK, and JA biosynthesis, including CPS, KS, GA20ox, GA3ox, GA2ox, YUCCA6, amid, ALDH, IPT, CYP735A, LOX, AOC, OPR, MFP2, and JMT. Additionally, many candidate genes were detected in the GA, IAA, CK, and JA signaling pathways, including GID1, DELLA, TF, AUX1, AUX/IAA, ARF, GH3, SAUR, AHP, B-ARR, A-ARR, JAR1, JAZ, and MYC2. Furthermore, some TFs related to flower growth were screened in three groups, such as AP2/ERF-ERF, MYB, MADS-M-type, bHLH, NAC, WRKY, HSF, and LFY. The findings of this study revealed the potential mechanism of floral bud differentiation and development in alfalfa and established a theoretical foundation for improving the seed yield of alfalfa.
- Open Access
Integrated Metabolomic and Transcriptomic Profiles Provide Insights into the Mechanisms of Anthocyanin and Carotenoid Biosynthesis in Petals of Medicago sativa ssp. sativa and Medicago sativa ssp. falcata
The petals of Medicago sativa ssp. sativa and M. sativa ssp. falcata are purple and yellow, respectively. Free hybridization between M. sativa ssp. sativa and M. sativa ssp. falcata has created hybrids with various flower colors in nature. Moreover, the flower colors of alfalfa are closely correlated with yield, nutritional quality, stress tolerance and other agronomic characteristics. To elucidate the underlying mechanisms of flower color formation in M. sativa ssp. sativa and M. sativa ssp. falcata, we conducted an integrative analysis of the transcriptome and metabolome of alfalfa with three different petal colors (purple, yellow and cream). The metabolic profiles suggested that anthocyanins and carotenoids are the crucial pigments in purple and yellow flowers, respectively. A quantitative exploration of the anthocyanin and carotenoid components indicated that the accumulations of cyanidin, delphinidin, peonidin, malvidin, pelargonidin and petunidin derivatives are significantly higher in purple flowers than in cream flowers. In addition, the content of carotenes (phytoene, α-carotene and β-carotene) and xanthophylls (α-cryptoxanthin, lutein, β-cryptoxanthin, zeaxanthin, antheraxanthin and violaxanthin derivatives) was markedly higher in yellow flowers than in cream flowers. Furthermore, we found that delphinidin-3,5-O-diglucoside and lutein were the predominant pigments accumulated in purple and yellow flowers, respectively. The transcriptomic results revealed that twenty-five upregulated structural genes (one C4H, three 4CL, twelve CHS, two CHI, one F3H, one F3′H, one F3′5′H and four DFR) are involved in the accumulation of anthocyanins in purple flowers, and nine structural genes (two PSY, one ZDS, two CRTISO, two BCH, one ZEP and one ECH) exert an effect on the carotenoid biosynthesis pathway in yellow flowers. The findings of this study reveal the underlying mechanisms of anthocyanin and carotenoid biosynthesis in alfalfa with three classic flower colors.
Open AccessIntegrated Metabolomic and Transcriptomic Profiles Provide Insights into the Mechanisms of Anthocyanin and Carotenoid Biosynthesis in Petals of Medicago sativa ssp. sativa and Medicago sativa ssp. falcata
The petals of Medicago sativa ssp. sativa and M. sativa ssp. falcata are purple and yellow, respectively. Free hybridization between M. sativa ssp. sativa and M. sativa ssp. falcata has created hybrids with various flower colors in nature. Moreover, the flower colors of alfalfa are closely correlated with yield, nutritional quality, stress tolerance and other agronomic characteristics. To elucidate the underlying mechanisms of flower color formation in M. sativa ssp. sativa and M. sativa ssp. falcata, we conducted an integrative analysis of the transcriptome and metabolome of alfalfa with three different petal colors (purple, yellow and cream). The metabolic profiles suggested that anthocyanins and carotenoids are the crucial pigments in purple and yellow flowers, respectively. A quantitative exploration of the anthocyanin and carotenoid components indicated that the accumulations of cyanidin, delphinidin, peonidin, malvidin, pelargonidin and petunidin derivatives are significantly higher in purple flowers than in cream flowers. In addition, the content of carotenes (phytoene, α-carotene and β-carotene) and xanthophylls (α-cryptoxanthin, lutein, β-cryptoxanthin, zeaxanthin, antheraxanthin and violaxanthin derivatives) was markedly higher in yellow flowers than in cream flowers. Furthermore, we found that delphinidin-3,5-O-diglucoside and lutein were the predominant pigments accumulated in purple and yellow flowers, respectively. The transcriptomic results revealed that twenty-five upregulated structural genes (one C4H, three 4CL, twelve CHS, two CHI, one F3H, one F3′H, one F3′5′H and four DFR) are involved in the accumulation of anthocyanins in purple flowers, and nine structural genes (two PSY, one ZDS, two CRTISO, two BCH, one ZEP and one ECH) exert an effect on the carotenoid biosynthesis pathway in yellow flowers. The findings of this study reveal the underlying mechanisms of anthocyanin and carotenoid biosynthesis in alfalfa with three classic flower colors.
- Open Access
Targeted Metabolomics Provide Chemotaxonomic Insights of Medicago ruthenica, with Coupled Transcriptomics Elucidating the Mechanism Underlying Floral Coloration
Medicago ruthenica, a wild legume forage widely distributed in the Eurasian steppe, demonstrates high genetic and phenotypic variation. M. ruthenica with a purely yellow flower (YFM), differing from the general phenotype of M. ruthenica with a purple flower (PFM), was recently discovered. The similar characteristics of YFM with Medicago falcata have led to conflicting opinions on its taxonomy using traditional morphological methods. The lack of chemotaxonomy information about M. ruthenica species and the unclear flower coloration mechanisms have hampered their study. Here, we investigated M. ruthenica using targeted metabolomics based on the chemotaxonomy method and elaborated the floral coloration mechanisms using transcriptomics. The identified flavonoids were the same types, but there were different contents in YFM and PFM, especially the contents of cyanidin-3-O-glucoside (C3G), an anthocyanin that causes the purple-reddish color of flowers. The over-accumulation of C3G in PFM was 1,770 times more than YFM. Nineteen anthocyanin-related genes were downregulated in YFM compared with their expression in PFM. Thus, YFM could be defined as a variety of M. ruthenica rather than a different species. The loss of purple flower coloration in YFM was attributed to the downregulation of these genes, resulting in reduced C3G accumulation. The taxonomic characteristics and molecular and physiological characteristics of this species will contribute to further research on other species with similar external morphologies.
Open AccessTargeted Metabolomics Provide Chemotaxonomic Insights of Medicago ruthenica, with Coupled Transcriptomics Elucidating the Mechanism Underlying Floral Coloration
Medicago ruthenica, a wild legume forage widely distributed in the Eurasian steppe, demonstrates high genetic and phenotypic variation. M. ruthenica with a purely yellow flower (YFM), differing from the general phenotype of M. ruthenica with a purple flower (PFM), was recently discovered. The similar characteristics of YFM with Medicago falcata have led to conflicting opinions on its taxonomy using traditional morphological methods. The lack of chemotaxonomy information about M. ruthenica species and the unclear flower coloration mechanisms have hampered their study. Here, we investigated M. ruthenica using targeted metabolomics based on the chemotaxonomy method and elaborated the floral coloration mechanisms using transcriptomics. The identified flavonoids were the same types, but there were different contents in YFM and PFM, especially the contents of cyanidin-3-O-glucoside (C3G), an anthocyanin that causes the purple-reddish color of flowers. The over-accumulation of C3G in PFM was 1,770 times more than YFM. Nineteen anthocyanin-related genes were downregulated in YFM compared with their expression in PFM. Thus, YFM could be defined as a variety of M. ruthenica rather than a different species. The loss of purple flower coloration in YFM was attributed to the downregulation of these genes, resulting in reduced C3G accumulation. The taxonomic characteristics and molecular and physiological characteristics of this species will contribute to further research on other species with similar external morphologies.
- 1 May 2020
- Published by Finnish Zoological and Botanical Publishing Board in Annales Botanici Fennici
- Vol. 57 (1-3) , 181-183
Astragalus shaerqinensis (Fabaceae), a New Species from Inner Mongolia, China
Astragalus shaerqinensis L. Liu & Z.Y. Li (Fabaceae), a new species from Inner Mongolia, China, is described and illustrated. Morphologically, it resembles A. dahuricus known from China, Korea and Siberia, but differs from it by having cream flowers, more leaflets, more strongly curved pods and smooth seeds without black spots on the surface.
- 1 May 2020
- Published by Finnish Zoological and Botanical Publishing Board in Annales Botanici Fennici
- Vol. 57 (1-3) , 181-183
Astragalus shaerqinensis (Fabaceae), a New Species from Inner Mongolia, China
Astragalus shaerqinensis L. Liu & Z.Y. Li (Fabaceae), a new species from Inner Mongolia, China, is described and illustrated. Morphologically, it resembles A. dahuricus known from China, Korea and Siberia, but differs from it by having cream flowers, more leaflets, more strongly curved pods and smooth seeds without black spots on the surface.