Yubo Tao
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Yubo Tao has a total of 92 co-authors. Here are the top co-authors by number of shared publications:
- Hai Lin
State Key Laboratory of CAD and CG, College of Computer Science and Technology, Zhejiang University, Hangzhou, China
28 shared publications Hai Lin
11 shared publications- Haoran Dai
State Key Laboratory of CAD&CG, Zhejiang University, Hangzhou, China
6 shared publications - Huan Liu
State Key Laboratory of CAD&CG, Zhejiang University, Hangzhou, China
5 shared publications - Jin Xu
Alibaba Business School, Hangzhou Normal University, Hangzhou, China
5 shared publications - Xiangyang He
State Key Lab of CAD&CG, Zhejiang University, Hangzhou, China
5 shared publications
Latest Publications
- 30 July 2026
- Published by Springer Nature in Journal of Visualization
- Vol. 29 (5) , 991-1011
GraphExVis: visual analytics for GNN interpretability and trustworthiness via local explanations
- 30 July 2026
- Published by Springer Nature in Journal of Visualization
- Vol. 29 (5) , 991-1011
GraphExVis: visual analytics for GNN interpretability and trustworthiness via local explanations
- Open Access
- 31 October 2025
- Published by MDPI AG in Diagnostics
- Vol. 15 (21) , 2763
Correlation Study Between Neoadjuvant Chemotherapy Response and Long-Term Prognosis in Breast Cancer Based on Deep Learning Models
Background : The pathological response to neoadjuvant chemotherapy (NAC) is an established predictor of long-term outcomes in breast cancer. However, conventional binary assessment based solely on pathological complete response (pCR) fails to capture prognostic heterogeneity across molecular subtypes. This study aimed to develop an interpretable deep learning model that integrates multiple clinical and pathological variables to predict both recurrence and metastasis development following NAC treatment. Methods: We conducted a retrospective analysis of 832 breast cancer patients who received NAC between 2013 and 2022. The analysis incorporated five key variables: tumor size changes, nodal status, Ki-67 index, Miller–Payne grade, and molecular subtype. A Multi-Layer Perceptron (MLP) model was implemented on the PyTorch platform and systematically benchmarked against SVM, Random Forest, and XGBoost models using five-fold cross-validation. Model performance was assessed by calculating the area under the curve (AUC), accuracy, precision, recall, and F1-score, and by analyzing confusion matrices. Results: The MLP model achieved AUC values of 0.86 (95% CI: 0.82–0.93) for HER2-positive cases, 0.82 (95% CI: 0.70–0.92) for triple-negative cases, and 0.76 (95% CI: 0.66–0.82) for HR+/HER2-negative cases. SHAP analysis identified post-NAC tumor size, Ki-67 index, and Miller–Payne grade as the most influential predictors. Notably, patients who achieved pCR still had a 12% risk of developing recurrence, highlighting the necessity for ongoing risk assessment beyond binary response evaluation. Conclusions: The proposed deep learning system provides precise and interpretable risk assessment for NAC patients, facilitating individualized treatment approaches and post-treatment monitoring plans.
- 31 October 2025
- Published by MDPI AG in Diagnostics
- Vol. 15 (21) , 2763
Open AccessCorrelation Study Between Neoadjuvant Chemotherapy Response and Long-Term Prognosis in Breast Cancer Based on Deep Learning Models
Background : The pathological response to neoadjuvant chemotherapy (NAC) is an established predictor of long-term outcomes in breast cancer. However, conventional binary assessment based solely on pathological complete response (pCR) fails to capture prognostic heterogeneity across molecular subtypes. This study aimed to develop an interpretable deep learning model that integrates multiple clinical and pathological variables to predict both recurrence and metastasis development following NAC treatment. Methods: We conducted a retrospective analysis of 832 breast cancer patients who received NAC between 2013 and 2022. The analysis incorporated five key variables: tumor size changes, nodal status, Ki-67 index, Miller–Payne grade, and molecular subtype. A Multi-Layer Perceptron (MLP) model was implemented on the PyTorch platform and systematically benchmarked against SVM, Random Forest, and XGBoost models using five-fold cross-validation. Model performance was assessed by calculating the area under the curve (AUC), accuracy, precision, recall, and F1-score, and by analyzing confusion matrices. Results: The MLP model achieved AUC values of 0.86 (95% CI: 0.82–0.93) for HER2-positive cases, 0.82 (95% CI: 0.70–0.92) for triple-negative cases, and 0.76 (95% CI: 0.66–0.82) for HR+/HER2-negative cases. SHAP analysis identified post-NAC tumor size, Ki-67 index, and Miller–Payne grade as the most influential predictors. Notably, patients who achieved pCR still had a 12% risk of developing recurrence, highlighting the necessity for ongoing risk assessment beyond binary response evaluation. Conclusions: The proposed deep learning system provides precise and interpretable risk assessment for NAC patients, facilitating individualized treatment approaches and post-treatment monitoring plans.
- Open Access
- 10 August 2025
- Published by MDPI AG in Technologies
- Vol. 13 (8) , 353
Dual-Channel ADCMix–BiLSTM Model with Attention Mechanisms for Multi-Dimensional Sentiment Analysis of Danmu
Sentiment analysis methods for interactive services such as Danmu in online videos are challenged by their colloquial style and diverse sentiment expressions. For instance, the existing methods cannot easily distinguish between similar sentiments. To address these limitations, this paper proposes a dual-channel model integrated with attention mechanisms for multi-dimensional sentiment analysis of Danmu. First, we replace word embeddings with character embeddings to better capture the colloquial nature of Danmu text. Second, the dual-channel multi-dimensional sentiment encoder extracts both the high-level semantic and raw contextual information. Channel I of the encoder learns the sentiment features from different perspectives through a mixed model that combines the benefits of self-Attention and Dilated CNN (ADCMix) and performs contextual modeling through bidirectional long short-term memory (BiLSTM) with attention mechanisms. Channel II mitigates potential biases and omissions in the sentiment features. The model combines the two channels to erase the fuzzy boundaries between similar sentiments. Third, a multi-dimensional sentiment decoder is designed to handle the diversity in sentiment expressions. The superior performance of the proposed model is experimentally demonstrated on two datasets. Our model outperformed the state-of-the-art methods on both datasets, with improvements of at least 2.05% in accuracy and 3.28% in F1-score.
- 10 August 2025
- Published by MDPI AG in Technologies
- Vol. 13 (8) , 353
Open AccessDual-Channel ADCMix–BiLSTM Model with Attention Mechanisms for Multi-Dimensional Sentiment Analysis of Danmu
Sentiment analysis methods for interactive services such as Danmu in online videos are challenged by their colloquial style and diverse sentiment expressions. For instance, the existing methods cannot easily distinguish between similar sentiments. To address these limitations, this paper proposes a dual-channel model integrated with attention mechanisms for multi-dimensional sentiment analysis of Danmu. First, we replace word embeddings with character embeddings to better capture the colloquial nature of Danmu text. Second, the dual-channel multi-dimensional sentiment encoder extracts both the high-level semantic and raw contextual information. Channel I of the encoder learns the sentiment features from different perspectives through a mixed model that combines the benefits of self-Attention and Dilated CNN (ADCMix) and performs contextual modeling through bidirectional long short-term memory (BiLSTM) with attention mechanisms. Channel II mitigates potential biases and omissions in the sentiment features. The model combines the two channels to erase the fuzzy boundaries between similar sentiments. Third, a multi-dimensional sentiment decoder is designed to handle the diversity in sentiment expressions. The superior performance of the proposed model is experimentally demonstrated on two datasets. Our model outperformed the state-of-the-art methods on both datasets, with improvements of at least 2.05% in accuracy and 3.28% in F1-score.
- 9 May 2025
- Published by Springer Nature in Journal of Visualization
- Vol. 28 (4) , 859-876
TOVis: a visual analytics system for outcome-driven treatment plan optimization
- 9 May 2025
- Published by Springer Nature in Journal of Visualization
- Vol. 28 (4) , 859-876
TOVis: a visual analytics system for outcome-driven treatment plan optimization
- Open Access
- 11 April 2025
- Published by Association for the Advancement of Artificial Intelligence (AAAI) in Proceedings of the AAAI Conference on Artificial Intelligence
- Vol. 39 (10) , 10049-10057
SIGraph: Saliency Image-Graph Network for Retinal Disease Classification in Fundus Image
An efficient and precise diagnosis of retinal diseases is a fundamental goal for auxiliary diagnostic systems in ophthalmology. Inspired by the importance of scattered subtle lesions in manual retinal disease diagnosis, recent research has achieved state-of-the-art performance by mining information related to subtle lesions, including their texture and shape. However, the spatial distribution patterns of subtle lesion areas, which are also crucial in manual diagnosis, have been overlooked in existing research. Neglecting these spatial distribution patterns (e.g., the ring distribution of microaneurysms in diabetic macular edema) may negatively impact the diagnostic process. In this paper, we introduce the Saliency-Image-Graph (SIGraph) network to capture the spatial distribution patterns of lesion areas. We first employ saliency-based perception to identify latent lesion pixels. Subsequently, we propose a novel image-graph block to efficiently capture the global distribution of abundant lesion pixels with minimal information loss. By leveraging additional distribution patterns, SIGraph achieves state-of-the-art performance with at least a 1.5% performance gain across three datasets. Furthermore, ablation studies demonstrate that our image-graph block can be integrated into other visual backbones and effectively boost performance.
- 11 April 2025
- Published by Association for the Advancement of Artificial Intelligence (AAAI) in Proceedings of the AAAI Conference on Artificial Intelligence
- Vol. 39 (10) , 10049-10057
Open AccessSIGraph: Saliency Image-Graph Network for Retinal Disease Classification in Fundus Image
An efficient and precise diagnosis of retinal diseases is a fundamental goal for auxiliary diagnostic systems in ophthalmology. Inspired by the importance of scattered subtle lesions in manual retinal disease diagnosis, recent research has achieved state-of-the-art performance by mining information related to subtle lesions, including their texture and shape. However, the spatial distribution patterns of subtle lesion areas, which are also crucial in manual diagnosis, have been overlooked in existing research. Neglecting these spatial distribution patterns (e.g., the ring distribution of microaneurysms in diabetic macular edema) may negatively impact the diagnostic process. In this paper, we introduce the Saliency-Image-Graph (SIGraph) network to capture the spatial distribution patterns of lesion areas. We first employ saliency-based perception to identify latent lesion pixels. Subsequently, we propose a novel image-graph block to efficiently capture the global distribution of abundant lesion pixels with minimal information loss. By leveraging additional distribution patterns, SIGraph achieves state-of-the-art performance with at least a 1.5% performance gain across three datasets. Furthermore, ablation studies demonstrate that our image-graph block can be integrated into other visual backbones and effectively boost performance.
- 9 March 2024
- Published by Springer Nature in Journal of Visualization
- Vol. 27 (3) , 437-450
Fast reconstruction of water-tight surface mesh of neurons
- 9 March 2024
- Published by Springer Nature in Journal of Visualization
- Vol. 27 (3) , 437-450
Fast reconstruction of water-tight surface mesh of neurons
- Open Access
MSFormer: A Skeleton-multiview Fusion Method For Tooth Instance Segmentation
Recently, deep learning-based tooth segmentation methods have been limited by the expensive and time-consuming processes of data collection and labeling. Achieving high-precision segmentation with limited datasets is critical. A viable solution to this entails fine-tuning pre-trained multiview-based models, thereby enhancing performance with limited data. However, relying solely on two-dimensional (2D) images for three-dimensional (3D) tooth segmentation can produce suboptimal outcomes because of occlusion and deformation, i.e., incomplete and distorted shape perception. To improve this fine-tuning-based solution, this paper advocates 2D-3D joint perception. The fundamental challenge in employing 2D-3D joint perception with limited data is that the 3D-related inputs and modules must follow a lightweight policy instead of using huge 3D data and parameter-rich modules that require extensive training data. Following this lightweight policy, this paper selects skeletons as the 3D inputs and introduces MSFormer, a novel method for tooth segmentation. MSFormer incorporates two lightweight modules into existing multiview-based models: a 3D-skeleton perception module to extract 3D perception from skeletons and a skeleton-image contrastive learning module to obtain the 2D-3D joint perception by fusing both multiview and skeleton perceptions. The experimental results reveal that MSFormer paired with large pre-trained multiview models achieves state-of-the-art performance, requiring only 100 training meshes. Furthermore, the segmentation accuracy is improved by 2.4%-5.5% with the increasing volume of training data.
Open AccessMSFormer: A Skeleton-multiview Fusion Method For Tooth Instance Segmentation
Recently, deep learning-based tooth segmentation methods have been limited by the expensive and time-consuming processes of data collection and labeling. Achieving high-precision segmentation with limited datasets is critical. A viable solution to this entails fine-tuning pre-trained multiview-based models, thereby enhancing performance with limited data. However, relying solely on two-dimensional (2D) images for three-dimensional (3D) tooth segmentation can produce suboptimal outcomes because of occlusion and deformation, i.e., incomplete and distorted shape perception. To improve this fine-tuning-based solution, this paper advocates 2D-3D joint perception. The fundamental challenge in employing 2D-3D joint perception with limited data is that the 3D-related inputs and modules must follow a lightweight policy instead of using huge 3D data and parameter-rich modules that require extensive training data. Following this lightweight policy, this paper selects skeletons as the 3D inputs and introduces MSFormer, a novel method for tooth segmentation. MSFormer incorporates two lightweight modules into existing multiview-based models: a 3D-skeleton perception module to extract 3D perception from skeletons and a skeleton-image contrastive learning module to obtain the 2D-3D joint perception by fusing both multiview and skeleton perceptions. The experimental results reveal that MSFormer paired with large pre-trained multiview models achieves state-of-the-art performance, requiring only 100 training meshes. Furthermore, the segmentation accuracy is improved by 2.4%-5.5% with the increasing volume of training data.
- 12 July 2023
- Published by Springer Nature in The Visual Computer
- Vol. 39 (8) , 3783-3796
InstantTrace: fast parallel neuron tracing on GPUs
- 12 July 2023
- Published by Springer Nature in The Visual Computer
- Vol. 39 (8) , 3783-3796
InstantTrace: fast parallel neuron tracing on GPUs
- 22 November 2022
- Published by Springer Nature in Journal of Visualization
- Vol. 26 (3) , 577-592
Interactive similar patient retrieval for visual summary of patient outcomes
- 22 November 2022
- Published by Springer Nature in Journal of Visualization
- Vol. 26 (3) , 577-592
Interactive similar patient retrieval for visual summary of patient outcomes
- 16 September 2022
- Published by Springer Nature
- p. 227-237
CephalFormer: Incorporating Global Structure Constraint into Visual Features for General Cephalometric Landmark Detection
- 16 September 2022
- Published by Springer Nature
- p. 227-237
CephalFormer: Incorporating Global Structure Constraint into Visual Features for General Cephalometric Landmark Detection