Ryan C. Murphy
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Research Subjects
Ryan C. Murphy has a total of 139 co-authors. Here are the top co-authors by number of shared publications:
Ying Lai
Department of Medicine, Division of Pulmonary, Critical Care and Sleep, University of Washington, Seattle, Washington, USA
12 shared publications- Teal S. Hallstrand
University of Washington Division of Pulmonary, Critical Care and Sleep, 2Center for Lung Biology, Department of Medicine Seattle, WA
11 shared publications Teal S. Hallstrand
Department of Medicine, Division of Pulmonary, Critical Care and Sleep, University of Washington, Seattle, Washington, USA
7 shared publicationsWilliam A. Altemeier
Division of Pulmonary, Critical Care, and Sleep Medicine, Seattle, Wash; Center for Lung Biology, University of Washington, Seattle, Wash
6 shared publicationsAdrian M. Piliponsky
Center for Immunity and Immunotherapies, Seattle Children's Research Institute, Seattle, Wash
5 shared publications- Dustin J. Maly
Department of Chemistry, University of Washington, Seattle, WA, USA
5 shared publications
Latest Publications
- Open Access
- 18 June 2026
- Published by European Respiratory Society (ERS) in ERJ Open Research
- Vol. 12 (5)
Relationships between basement membrane zone thickness and airway physiology, epithelial gene expression, and innate immune cell infiltration in asthma
Rationale: Thickening of the basement membrane zone (BMZ) has often been identified in airway biopsies of individuals with asthma, but the relationship of BMZ thickness with airway dysfunction and inflammation is incompletely understood. Objectives: Characterize the relationship between BMZ thickness and airway physiology, immune cell infiltration, and airway gene expression. Methods: We used design-based stereology to measure BMZ thickness in endobronchial biopsy samples obtained from 10 healthy control subjects and 31 individuals with asthma not receiving asthma-directed anti-inflammatory therapies (only using as needed albuterol for the study period). BMZ thickness was correlated with measures of airway physiology, sputum inflammatory markers, airway wall immunopathology, and gene expression from airway epithelial brushings. Results: Individuals with asthma had a significantly thicker BMZ relative to healthy controls. BMZ thickness was negatively correlated with age and positively correlated with higher baseline lung function (FVC), mast cell (MC) infiltration of the airway epithelial compartment, and expression of type 2 (T2) inflammatory genes in the airway. Thickening of the BMZ was not significantly associated with the bronchodilator response, direct airway hyperresponsiveness (AHR) to methacholine, indirect AHR in the form of exercise-induced bronchoconstriction, T1 or T3 inflammation, or airway eosinophilia. Conclusions: MC infiltration of the airway epithelial compartment and T2 inflammation are significantly associated with a thickened BMZ in asthma.
- 18 June 2026
- Published by European Respiratory Society (ERS) in ERJ Open Research
- Vol. 12 (5)
Open AccessRelationships between basement membrane zone thickness and airway physiology, epithelial gene expression, and innate immune cell infiltration in asthma
Rationale: Thickening of the basement membrane zone (BMZ) has often been identified in airway biopsies of individuals with asthma, but the relationship of BMZ thickness with airway dysfunction and inflammation is incompletely understood. Objectives: Characterize the relationship between BMZ thickness and airway physiology, immune cell infiltration, and airway gene expression. Methods: We used design-based stereology to measure BMZ thickness in endobronchial biopsy samples obtained from 10 healthy control subjects and 31 individuals with asthma not receiving asthma-directed anti-inflammatory therapies (only using as needed albuterol for the study period). BMZ thickness was correlated with measures of airway physiology, sputum inflammatory markers, airway wall immunopathology, and gene expression from airway epithelial brushings. Results: Individuals with asthma had a significantly thicker BMZ relative to healthy controls. BMZ thickness was negatively correlated with age and positively correlated with higher baseline lung function (FVC), mast cell (MC) infiltration of the airway epithelial compartment, and expression of type 2 (T2) inflammatory genes in the airway. Thickening of the BMZ was not significantly associated with the bronchodilator response, direct airway hyperresponsiveness (AHR) to methacholine, indirect AHR in the form of exercise-induced bronchoconstriction, T1 or T3 inflammation, or airway eosinophilia. Conclusions: MC infiltration of the airway epithelial compartment and T2 inflammation are significantly associated with a thickened BMZ in asthma.
- Open Access
- 5 December 2025
- Published by Wiley
Human Rhinovirus A16 Infection of Mast Cells Promotes T2 and non-T2 Immune Responses that are Modulated by the Airway Epithelium
- 5 December 2025
- Published by Wiley
Open AccessHuman Rhinovirus A16 Infection of Mast Cells Promotes T2 and non-T2 Immune Responses that are Modulated by the Airway Epithelium
- 3 July 2025
- Published by Elsevier in Clinics in Chest Medicine
- Vol. 46 (3) , 453-465
Exercise and Mannitol Bronchial Challenge Testing
- 3 July 2025
- Published by Elsevier in Clinics in Chest Medicine
- Vol. 46 (3) , 453-465
Exercise and Mannitol Bronchial Challenge Testing
- Open Access
- 1 December 2023
- Published by Oxford University Press (OUP) in ImmunoHorizons
- Vol. 7 (12) , 853-860
Intravascular Leukocyte Labeling Refines the Distribution of Myeloid Cells in the Lung in Models of Allergen-induced Airway Inflammation
Innate immune cell populations are critical in asthma with different functional characteristics based on tissue location, which has amplified the importance of characterizing the precise number and location of innate immune populations in murine models of asthma. In this study, we performed premortem intravascular (IV) labeling of leukocytes in mice in two models of asthma to differentiate innate immune cell populations within the IV compartment versus those residing in the lung tissue or airway lumen. We performed spectral flow cytometry analysis of the blood, suspensions of digested lung tissue, and bronchoalveolar lavage fluid. We discovered that IV labeled leukocytes do not contaminate analysis of bronchoalveolar lavage fluid but represent a significant proportion of cells in digested lung tissue. Exclusion of IV leukocytes significantly improved the accuracy of the assessments of myeloid cells in the lung tissue and provided important insights into ongoing trafficking in both eosinophilic and neutrophilic asthma models.
- 1 December 2023
- Published by Oxford University Press (OUP) in ImmunoHorizons
- Vol. 7 (12) , 853-860
Open AccessIntravascular Leukocyte Labeling Refines the Distribution of Myeloid Cells in the Lung in Models of Allergen-induced Airway Inflammation
Innate immune cell populations are critical in asthma with different functional characteristics based on tissue location, which has amplified the importance of characterizing the precise number and location of innate immune populations in murine models of asthma. In this study, we performed premortem intravascular (IV) labeling of leukocytes in mice in two models of asthma to differentiate innate immune cell populations within the IV compartment versus those residing in the lung tissue or airway lumen. We performed spectral flow cytometry analysis of the blood, suspensions of digested lung tissue, and bronchoalveolar lavage fluid. We discovered that IV labeled leukocytes do not contaminate analysis of bronchoalveolar lavage fluid but represent a significant proportion of cells in digested lung tissue. Exclusion of IV leukocytes significantly improved the accuracy of the assessments of myeloid cells in the lung tissue and provided important insights into ongoing trafficking in both eosinophilic and neutrophilic asthma models.
- 15 June 2023
- Published by Oxford University Press (OUP) in American Journal of Respiratory and Critical Care Medicine
- Vol. 207 (12) , 1565-1575
Distinct Epithelial-Innate Immune Cell Transcriptional Circuits Underlie Airway Hyperresponsiveness in Asthma
Rationale: Indirect airway hyperresponsiveness (AHR) is a highly specific feature of asthma, but the underlying mechanisms responsible for driving indirect AHR remain incompletely understood. Objectives: To identify differences in gene expression in epithelial brushings obtained from individuals with asthma who were characterized for indirect AHR in the form of exercise-induced bronchoconstriction (EIB). Methods: RNA-sequencing analysis was performed on epithelial brushings obtained from individuals with asthma with EIB (n = 11) and without EIB (n = 9). Differentially expressed genes (DEGs) between the groups were correlated with measures of airway physiology, sputum inflammatory markers, and airway wall immunopathology. On the basis of these relationships, we examined the effects of primary airway epithelial cells (AECs) and specific epithelial cell–derived cytokines on both mast cells (MCs) and eosinophils (EOS). Measurements and Main Results: We identified 120 DEGs in individuals with and without EIB. Network analyses suggested critical roles for IL-33–, IL-18–, and IFN-γ–related signaling among these DEGs. IL1RL1 expression was positively correlated with the density of MCs in the epithelial compartment, and IL1RL1, IL18R1, and IFNG were positively correlated with the density of intraepithelial EOS. Subsequent ex vivo modeling demonstrated that AECs promote sustained type 2 (T2) inflammation in MCs and enhance IL-33–induced T2 gene expression. Furthermore, EOS increase the expression of IFNG and IL13 in response to both IL-18 and IL-33 as well as exposure to AECs. Conclusions: Circuits involving epithelial interactions with MCs and EOS are closely associated with indirect AHR. Ex vivo modeling indicates that epithelial-dependent regulation of these innate cells may be critical in indirect AHR and modulating T2 and non-T2 inflammation in asthma.
- 15 June 2023
- Published by Oxford University Press (OUP) in American Journal of Respiratory and Critical Care Medicine
- Vol. 207 (12) , 1565-1575
Distinct Epithelial-Innate Immune Cell Transcriptional Circuits Underlie Airway Hyperresponsiveness in Asthma
Rationale: Indirect airway hyperresponsiveness (AHR) is a highly specific feature of asthma, but the underlying mechanisms responsible for driving indirect AHR remain incompletely understood. Objectives: To identify differences in gene expression in epithelial brushings obtained from individuals with asthma who were characterized for indirect AHR in the form of exercise-induced bronchoconstriction (EIB). Methods: RNA-sequencing analysis was performed on epithelial brushings obtained from individuals with asthma with EIB (n = 11) and without EIB (n = 9). Differentially expressed genes (DEGs) between the groups were correlated with measures of airway physiology, sputum inflammatory markers, and airway wall immunopathology. On the basis of these relationships, we examined the effects of primary airway epithelial cells (AECs) and specific epithelial cell–derived cytokines on both mast cells (MCs) and eosinophils (EOS). Measurements and Main Results: We identified 120 DEGs in individuals with and without EIB. Network analyses suggested critical roles for IL-33–, IL-18–, and IFN-γ–related signaling among these DEGs. IL1RL1 expression was positively correlated with the density of MCs in the epithelial compartment, and IL1RL1, IL18R1, and IFNG were positively correlated with the density of intraepithelial EOS. Subsequent ex vivo modeling demonstrated that AECs promote sustained type 2 (T2) inflammation in MCs and enhance IL-33–induced T2 gene expression. Furthermore, EOS increase the expression of IFNG and IL13 in response to both IL-18 and IL-33 as well as exposure to AECs. Conclusions: Circuits involving epithelial interactions with MCs and EOS are closely associated with indirect AHR. Ex vivo modeling indicates that epithelial-dependent regulation of these innate cells may be critical in indirect AHR and modulating T2 and non-T2 inflammation in asthma.
- 13 March 2023
- Published by Wiley in Respirology
- Vol. 28 (5) , 491-494
Sputum periostin is a biomarker of type 2 inflammation but not airway dysfunction in asthma
- 13 March 2023
- Published by Wiley in Respirology
- Vol. 28 (5) , 491-494
Sputum periostin is a biomarker of type 2 inflammation but not airway dysfunction in asthma
- Open Access
- 15 February 2023
- Published by Oxford University Press (OUP) in American Journal of Respiratory and Critical Care Medicine
- Vol. 207 (4) , 383-385
The Intersection between Autoimmunity, Macrophage Dysfunction, Endotype, and Exacerbations in Severe Asthma
- 15 February 2023
- Published by Oxford University Press (OUP) in American Journal of Respiratory and Critical Care Medicine
- Vol. 207 (4) , 383-385
Open AccessThe Intersection between Autoimmunity, Macrophage Dysfunction, Endotype, and Exacerbations in Severe Asthma
- 26 January 2023
- Published by Elsevier in Journal of Allergy and Clinical Immunology
- Vol. 151 (6) , 1484-1493
Rhinovirus infection of the airway epithelium enhances mast cell immune responses via epithelial-derived interferons
- 26 January 2023
- Published by Elsevier in Journal of Allergy and Clinical Immunology
- Vol. 151 (6) , 1484-1493
Rhinovirus infection of the airway epithelium enhances mast cell immune responses via epithelial-derived interferons