Rui Man
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Rui Man has a total of 17 co-authors. Here are the top co-authors by number of shared publications:
- Xiaoli Wang
Agricultural Information Institute of CAAS, Beijing, China
3 shared publications - Lingling Zuo
School of Computer Science and Engineering, Nanjing University of Science and Technology, Nanjing, China
2 shared publications Xinger Li
School of Computer Science and Engineering, Nanjing University of Science and Technology, Nanjing, China
2 shared publications- Yang Yang
School of Computer Science and Engineering, Nanjing University of Science and Technology, Nanjing, China
2 shared publications Guomin Zhou
Chinese Academy of Agricultural Sciences, National Agricultural Science Data Center
1 shared publication- Hailong Liu
Agricultural Information Institute, Chinese Academy of Agricultural Sciences, Beijing, China, China
1 shared publication
Latest Publications
- Open Access
- 9 August 2026
- Published by Springer Nature in Plant Methods
- Vol. 22 (1)
RAGP: a retrieval-augmented deep learning model for genomic prediction in crop breeding
- 9 August 2026
- Published by Springer Nature in Plant Methods
- Vol. 22 (1)
Open AccessRAGP: a retrieval-augmented deep learning model for genomic prediction in crop breeding
- Open Access
- 27 January 2026
- Published by MDPI AG in Preprints.org
Agricultural Meteorological Disaster Relation Extraction Technology Based on BERT and Adaptive Denoising Graph Network
The increasing frequency of extreme weather events has resulted in a rapid growth of unstructured meteorological texts, posing challenges for accurate disaster-related information extraction. Existing relation extraction models that integrate semantic and syntactic information via Graph Convolutional Networks (GCNs) often suffer from noise amplification and information redundancy. To address these limitations, we propose a domain-specific relation extraction framework that integrates Bidirectional Encoder Representations from Transformers (BERT) with an Adaptive Denoising Graph Network. A dual-tuning architecture is designed to jointly model semantic and syntactic features. Specifically, a Self-Attention Graph Convolutional Network (SA-GCN) dynamically prunes irrelevant dependency structures, while a Residual Shrinkage Network (RS-Net) performs fine-grained feature denoising through sample-adaptive threshold learning. Experiments on the public DUIE 2.0 dataset and a newly constructed Agricultural Meteorological Disaster dataset demonstrate that the proposed model achieves F1 scores of 91.51% and 92.84%, respectively, outperforming state-of-the-art methods. Ablation studies further confirm the effectiveness of adaptive denoising in handling complex linguistic structures in disaster reports. The proposed approach enhances the robustness and accuracy of meteorological relation extraction and provides technical support for knowledge graph construction and intelligent disaster early warning systems.
- 27 January 2026
- Published by MDPI AG in Preprints.org
Open AccessAgricultural Meteorological Disaster Relation Extraction Technology Based on BERT and Adaptive Denoising Graph Network
The increasing frequency of extreme weather events has resulted in a rapid growth of unstructured meteorological texts, posing challenges for accurate disaster-related information extraction. Existing relation extraction models that integrate semantic and syntactic information via Graph Convolutional Networks (GCNs) often suffer from noise amplification and information redundancy. To address these limitations, we propose a domain-specific relation extraction framework that integrates Bidirectional Encoder Representations from Transformers (BERT) with an Adaptive Denoising Graph Network. A dual-tuning architecture is designed to jointly model semantic and syntactic features. Specifically, a Self-Attention Graph Convolutional Network (SA-GCN) dynamically prunes irrelevant dependency structures, while a Residual Shrinkage Network (RS-Net) performs fine-grained feature denoising through sample-adaptive threshold learning. Experiments on the public DUIE 2.0 dataset and a newly constructed Agricultural Meteorological Disaster dataset demonstrate that the proposed model achieves F1 scores of 91.51% and 92.84%, respectively, outperforming state-of-the-art methods. Ablation studies further confirm the effectiveness of adaptive denoising in handling complex linguistic structures in disaster reports. The proposed approach enhances the robustness and accuracy of meteorological relation extraction and provides technical support for knowledge graph construction and intelligent disaster early warning systems.
- Open Access
- 11 November 2025
- Published by Springer Nature in Research Square
RAGP: a retrieval-augmented deep learning model for genomic prediction in crop breeding
Genomic prediction (GP) plays a pivotal role in expediting genetic gains for crop breeding. Recently, deep learning models has attracted growing attention in this field due to its superior performance over traditional models. However, most advanced models rely on simplified numerical representations of genomic variants and treat individuals in isolation, failing to capture the full complexity of genetic variation and the genetic relatedness among individuals. In response, we propose RAGP, a deep learning model driven by a retrieval-augmented mechanism composed of two synergistic components: 1) an embedding-based retrieval module that identifies a group of nearest neighbors highly relevant to the target sample as references, employs a gene-specific discriminator to refine the representation space and capture informative genetic structures; 2) an augmentation module that integrates the retrieved references to enhance the target representation. The enriched representation is then propagated through a regression network for final prediction. This retrieval-guided strategy enables more informed and fine-grained utilization of genomic data and strengthens the model’s capacity to capture individual-level genetic relationships. Extensive experiments reveal that RAGP achieves consistently superior predictive performance compared to both conventional methods and state-of-the-art deep learning models. By incorporating retrieval-augmented mechanisms, RAGP achieves substantial improvements in predictive accuracy and offers a promising direction for advancing genomic selection in crop breeding. Our code is available on https://github.com/l00907l/RAGP.
- 11 November 2025
- Published by Springer Nature in Research Square
Open AccessRAGP: a retrieval-augmented deep learning model for genomic prediction in crop breeding
Genomic prediction (GP) plays a pivotal role in expediting genetic gains for crop breeding. Recently, deep learning models has attracted growing attention in this field due to its superior performance over traditional models. However, most advanced models rely on simplified numerical representations of genomic variants and treat individuals in isolation, failing to capture the full complexity of genetic variation and the genetic relatedness among individuals. In response, we propose RAGP, a deep learning model driven by a retrieval-augmented mechanism composed of two synergistic components: 1) an embedding-based retrieval module that identifies a group of nearest neighbors highly relevant to the target sample as references, employs a gene-specific discriminator to refine the representation space and capture informative genetic structures; 2) an augmentation module that integrates the retrieved references to enhance the target representation. The enriched representation is then propagated through a regression network for final prediction. This retrieval-guided strategy enables more informed and fine-grained utilization of genomic data and strengthens the model’s capacity to capture individual-level genetic relationships. Extensive experiments reveal that RAGP achieves consistently superior predictive performance compared to both conventional methods and state-of-the-art deep learning models. By incorporating retrieval-augmented mechanisms, RAGP achieves substantial improvements in predictive accuracy and offers a promising direction for advancing genomic selection in crop breeding. Our code is available on https://github.com/l00907l/RAGP.
- Open Access
- 1 June 2023
- Published by Computer Network Information Center, Chinese Academy of Sciences in China Scientific Data
- Vol. 8 (2)
A dataset of the visible light remote sensing images for offshore maritime targets in Sanduao from 2019 to 2021
- 1 June 2023
- Published by Computer Network Information Center, Chinese Academy of Sciences in China Scientific Data
- Vol. 8 (2)
Open AccessA dataset of the visible light remote sensing images for offshore maritime targets in Sanduao from 2019 to 2021
- 29 September 2020
- Published by Springer Nature
- p. 1055-1065
Research on the System Architecture of Scientific Data Management
- 29 September 2020
- Published by Springer Nature
- p. 1055-1065
Research on the System Architecture of Scientific Data Management