Chaima Ben Rabah
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Previous Organizations / Institutes
The organizations / institutes from the scholar's other articles in the past ten years
Chaima Ben Rabah has a total of 17 co-authors. Here are the top co-authors by number of shared publications:
- Ahmed Serag
AI Innovation Lab, Weill Cornell Medicine—Qatar, Doha P.O. Box 24144, Qatar
3 shared publications Ahmed Serag
AI Innovation Lab Weill Cornell Medicine Doha Qatar
2 shared publicationsGouenou Coatrieux
Technopôle Brest-Iroise, LaTIM Inserm UMR1101, IMT Atlantique, Plouzané, France
2 shared publicationsRiadh Abdelfattah
Technopôle Brest-Iroise, LaTIM Inserm UMR1101, IMT Atlantique, Plouzané, France
2 shared publications- Aamenah Sattar
Department of Medicine, New Vision University, 0159 Tbilisi, Georgia
1 shared publication - Ahmed Ibrahim
AI Innovation Lab, Weill Cornell Medicine—Qatar, Doha P.O. Box 24144, Qatar
1 shared publication
Latest Publications
- Open Access
ARGUS: An Agentic Reasoning and General Understanding System with Applications in Medical Image Analysis
Recent advances in artificial intelligence have significantly improved performance in medical imaging tasks such as segmentation, quantification, and report generation. However, most existing solutions operate as static pipelines with limited adaptability, quality assurance, and workflow-level reasoning. In this work, we present ARGUS, an agentic framework for multimodal medical image analysis that coordinates specialized agents within a unified architecture. An Orchestrator Agent interprets user requests, identifies the imaging modality, and assembles task-specific execution plans by selectively engaging processing, quantification, verification, knowledge retrieval, and reporting agents. This enables context-aware decision-making and dynamic workflow reconfiguration based on intermediate findings and runtime conditions. A key feature of ARGUS is its ability to supervise and contextualize analytical processes. The Verification Agent performs quality control by assessing intermediate artifacts against task-specific criteria, while the Knowledge Retrieval Agent enriches quantitative findings with evidence from the biomedical literature and established physiological reference ranges. Together, these components promote transparency, support automated error detection, and reduce the risk of propagating unreliable information through downstream stages. The framework was evaluated across three imaging domains: radiology (MRI), pathology (hematopathology), and ophthalmology (OCT). Quantitative evaluation demonstrated strong agreement between ARGUS and reference standards across pathology, OCT, and MRI tasks, achieving a cell-counting bias of cells (MAE = ), a full retinal thickness bias of −31.30 (MAE = 37.63 ), and MRI volumetric errors below 3 , while also achieving closer agreement with reference measurements than the evaluated general-purpose and domain-specific baseline systems. These results demonstrate the feasibility and potential value of agent-based orchestration for enabling adaptive, validated, and interpretable multimodal imaging workflows while providing a scalable foundation for complex multi-step clinical analysis.Open AccessARGUS: An Agentic Reasoning and General Understanding System with Applications in Medical Image Analysis
Recent advances in artificial intelligence have significantly improved performance in medical imaging tasks such as segmentation, quantification, and report generation. However, most existing solutions operate as static pipelines with limited adaptability, quality assurance, and workflow-level reasoning. In this work, we present ARGUS, an agentic framework for multimodal medical image analysis that coordinates specialized agents within a unified architecture. An Orchestrator Agent interprets user requests, identifies the imaging modality, and assembles task-specific execution plans by selectively engaging processing, quantification, verification, knowledge retrieval, and reporting agents. This enables context-aware decision-making and dynamic workflow reconfiguration based on intermediate findings and runtime conditions. A key feature of ARGUS is its ability to supervise and contextualize analytical processes. The Verification Agent performs quality control by assessing intermediate artifacts against task-specific criteria, while the Knowledge Retrieval Agent enriches quantitative findings with evidence from the biomedical literature and established physiological reference ranges. Together, these components promote transparency, support automated error detection, and reduce the risk of propagating unreliable information through downstream stages. The framework was evaluated across three imaging domains: radiology (MRI), pathology (hematopathology), and ophthalmology (OCT). Quantitative evaluation demonstrated strong agreement between ARGUS and reference standards across pathology, OCT, and MRI tasks, achieving a cell-counting bias of cells (MAE = ), a full retinal thickness bias of −31.30 (MAE = 37.63 ), and MRI volumetric errors below 3 , while also achieving closer agreement with reference measurements than the evaluated general-purpose and domain-specific baseline systems. These results demonstrate the feasibility and potential value of agent-based orchestration for enabling adaptive, validated, and interpretable multimodal imaging workflows while providing a scalable foundation for complex multi-step clinical analysis. - Open Access
- 12 June 2026
- Published by MDPI AG in Machine Learning and Knowledge Extraction
- Vol. 8 (6) , 164
Do Foundation Models Truly Outperform Domain-Specific Models? Evidence from Digital Pathology
Foundation models (FMs) are increasingly proposed as general-purpose solutions for computational pathology, with the potential to simplify clinical artificial intelligence deployment by reducing the need for task-specific architectures. However, their reliability across cancer domains with distinct morphological characteristics remains unclear, limiting confidence in real-world clinical use. We benchmarked seven general-purpose pathology FMs and three domain-specific FMs across eleven patch-level datasets spanning three clinically relevant domains: pediatric hematology, prostate cancer, and breast cancer, using both linear probing and last-layer fine-tuning adaptation strategies. By jointly evaluating pediatric leukemia, male-predominant prostate cancer, and female-predominant breast cancer, this study is, to our knowledge, the first to explicitly examine specialist-versus-generalist FM behavior across age- and sex-stratified cancer populations. Performance differences were strongly domain dependent. In hematology, the specialist FM DINOBloom matched and, in several datasets, marginally exceeded leading generalist models (AUC 0.990–0.999 vs. GigaPath 0.981–1.000), suggesting advantages for highly distinctive cellular morphology. In prostate cancer grading, the generalist FM UNI2-h consistently outperformed the specialist HistoEncoder (AUC 0.956–0.977 vs. 0.908–0.964). In breast cancer, UNI2-h achieved the best overall performance across all tasks. No publicly available breast-cancer-specific FM currently exists for direct comparison; therefore, breast cancer results characterize general FM transferability rather than specialist-versus-generalist differences. Importantly, cross-dataset experiments revealed substantial performance degradation under dataset shift in both prostate and breast cancer, indicating that current FMs are not yet robust enough for heterogeneous multi-site clinical use. These findings support the use of generalist FMs as efficient backbones for well-characterized single-site, patch-level tasks, while challenging the assumption that high benchmark performance necessarily reflects true clinical readiness and demonstrating that pathology FMs are not uniformly superior to specialist models.
- 12 June 2026
- Published by MDPI AG in Machine Learning and Knowledge Extraction
- Vol. 8 (6) , 164
Open AccessDo Foundation Models Truly Outperform Domain-Specific Models? Evidence from Digital Pathology
Foundation models (FMs) are increasingly proposed as general-purpose solutions for computational pathology, with the potential to simplify clinical artificial intelligence deployment by reducing the need for task-specific architectures. However, their reliability across cancer domains with distinct morphological characteristics remains unclear, limiting confidence in real-world clinical use. We benchmarked seven general-purpose pathology FMs and three domain-specific FMs across eleven patch-level datasets spanning three clinically relevant domains: pediatric hematology, prostate cancer, and breast cancer, using both linear probing and last-layer fine-tuning adaptation strategies. By jointly evaluating pediatric leukemia, male-predominant prostate cancer, and female-predominant breast cancer, this study is, to our knowledge, the first to explicitly examine specialist-versus-generalist FM behavior across age- and sex-stratified cancer populations. Performance differences were strongly domain dependent. In hematology, the specialist FM DINOBloom matched and, in several datasets, marginally exceeded leading generalist models (AUC 0.990–0.999 vs. GigaPath 0.981–1.000), suggesting advantages for highly distinctive cellular morphology. In prostate cancer grading, the generalist FM UNI2-h consistently outperformed the specialist HistoEncoder (AUC 0.956–0.977 vs. 0.908–0.964). In breast cancer, UNI2-h achieved the best overall performance across all tasks. No publicly available breast-cancer-specific FM currently exists for direct comparison; therefore, breast cancer results characterize general FM transferability rather than specialist-versus-generalist differences. Importantly, cross-dataset experiments revealed substantial performance degradation under dataset shift in both prostate and breast cancer, indicating that current FMs are not yet robust enough for heterogeneous multi-site clinical use. These findings support the use of generalist FMs as efficient backbones for well-characterized single-site, patch-level tasks, while challenging the assumption that high benchmark performance necessarily reflects true clinical readiness and demonstrating that pathology FMs are not uniformly superior to specialist models.
- Open Access
- 22 November 2025
- Published by Wiley in Annals of Clinical and Translational Neurology
- Vol. 13 (4) , 747-754
Deep Learning–Assisted Differentiation of Four Peripheral Neuropathies Using Corneal Confocal Microscopy
Objective: Peripheral neuropathies contribute to patient disability but may be diagnosed late or missed altogether due to late referral, limitation of current diagnostic methods and lack of specialized testing facilities. To address this clinical gap, we developed NeuropathAI, an interpretable deep learning–based multiclass classification system for rapid, automated diagnosis and differentiation of 88 patients with diabetic peripheral neuropathy (DPN), chemotherapy‐induced peripheral neuropathy (CIPN), chronic inflammatory demyelinating polyneuropathy (CIDP), and human immunodeficiency virus‐associated sensory neuropathy (HIV‐SN). Methods: A deep learning–based multiclass system was developed to analyze corneal nerve images. These images were preprocessed to train and validate the proposed model and the diagnostic utility was evaluated from the accuracy, F1 ‐score and area under the curve to derive sensitivity, specificity and precision. Results: NeuropathAI achieved excellent results: AUC—96.75%, sensitivity—83.87%, specificity—95.07%, and demonstrated excellent discrimination for CIDP, CIPN, HIV‐SN and DPN with one‐vs‐all AUC scores of 97%, 93.1%, 99.7% and 96.9%, respectively. Explainability visualization through heatmaps demonstrated that regions of decision making by the model localized to areas with nerve fiber loss, enhancing interpretability. Interpretation: NeuropathAI achieved rapid and accurate diagnosis of four of the most prevalent peripheral neuropathies globally, underscoring the potential of artificial intelligence–driven corneal image analysis for the rapid diagnosis and differentiation of peripheral neuropathies.
- 22 November 2025
- Published by Wiley in Annals of Clinical and Translational Neurology
- Vol. 13 (4) , 747-754
Open AccessDeep Learning–Assisted Differentiation of Four Peripheral Neuropathies Using Corneal Confocal Microscopy
Objective: Peripheral neuropathies contribute to patient disability but may be diagnosed late or missed altogether due to late referral, limitation of current diagnostic methods and lack of specialized testing facilities. To address this clinical gap, we developed NeuropathAI, an interpretable deep learning–based multiclass classification system for rapid, automated diagnosis and differentiation of 88 patients with diabetic peripheral neuropathy (DPN), chemotherapy‐induced peripheral neuropathy (CIPN), chronic inflammatory demyelinating polyneuropathy (CIDP), and human immunodeficiency virus‐associated sensory neuropathy (HIV‐SN). Methods: A deep learning–based multiclass system was developed to analyze corneal nerve images. These images were preprocessed to train and validate the proposed model and the diagnostic utility was evaluated from the accuracy, F1 ‐score and area under the curve to derive sensitivity, specificity and precision. Results: NeuropathAI achieved excellent results: AUC—96.75%, sensitivity—83.87%, specificity—95.07%, and demonstrated excellent discrimination for CIDP, CIPN, HIV‐SN and DPN with one‐vs‐all AUC scores of 97%, 93.1%, 99.7% and 96.9%, respectively. Explainability visualization through heatmaps demonstrated that regions of decision making by the model localized to areas with nerve fiber loss, enhancing interpretability. Interpretation: NeuropathAI achieved rapid and accurate diagnosis of four of the most prevalent peripheral neuropathies globally, underscoring the potential of artificial intelligence–driven corneal image analysis for the rapid diagnosis and differentiation of peripheral neuropathies.
- 12 October 2025
- Published by Springer Nature
- p. 130-139
Beyond Broad Applications: Can Pathology Foundation Models Adapt to Hematopathology?
- 12 October 2025
- Published by Springer Nature
- p. 130-139
Beyond Broad Applications: Can Pathology Foundation Models Adapt to Hematopathology?
- Top Cited PapersOpen Access
- 14 April 2025
- Published by MDPI AG in Diagnostics
- Vol. 15 (8) , 995
A Multimodal Deep Learning Model for the Classification of Breast Cancer Subtypes
Background: Breast cancer is a heterogeneous disease with distinct molecular subtypes, each requiring tailored therapeutic strategies. Accurate classification of these subtypes is crucial for optimizing treatment and improving patient outcomes. While immunohistochemistry remains the gold standard for subtyping, it is invasive and may not fully capture tumor heterogeneity. Artificial Intelligence (AI), particularly Deep Learning (DL), offers a promising non-invasive alternative by analyzing medical imaging data. Methods: In this study, we propose a multimodal DL model that integrates mammography images with clinical metadata to classify breast lesions into five categories: benign, luminal A, luminal B, HER2-enriched, and triple-negative. Using the publicly available Chinese Mammography Database (CMMD), our model was trained and evaluated on a dataset of 4056 images from 1775 patients. Results: The proposed multimodal approach significantly outperformed a unimodal model based solely on mammography images, achieving an AUC of 88.87% for multiclass classification of these five categories, compared to 61.3% AUC for the unimodal model. Conclusions: These findings highlight the potential of multimodal AI-driven approaches for non-invasive breast cancer subtype classification, paving the way for improved diagnostic precision and personalized treatment strategies.
- 14 April 2025
- Published by MDPI AG in Diagnostics
- Vol. 15 (8) , 995
Top Cited PapersOpen AccessA Multimodal Deep Learning Model for the Classification of Breast Cancer Subtypes
Background: Breast cancer is a heterogeneous disease with distinct molecular subtypes, each requiring tailored therapeutic strategies. Accurate classification of these subtypes is crucial for optimizing treatment and improving patient outcomes. While immunohistochemistry remains the gold standard for subtyping, it is invasive and may not fully capture tumor heterogeneity. Artificial Intelligence (AI), particularly Deep Learning (DL), offers a promising non-invasive alternative by analyzing medical imaging data. Methods: In this study, we propose a multimodal DL model that integrates mammography images with clinical metadata to classify breast lesions into five categories: benign, luminal A, luminal B, HER2-enriched, and triple-negative. Using the publicly available Chinese Mammography Database (CMMD), our model was trained and evaluated on a dataset of 4056 images from 1775 patients. Results: The proposed multimodal approach significantly outperformed a unimodal model based solely on mammography images, achieving an AUC of 88.87% for multiclass classification of these five categories, compared to 61.3% AUC for the unimodal model. Conclusions: These findings highlight the potential of multimodal AI-driven approaches for non-invasive breast cancer subtype classification, paving the way for improved diagnostic precision and personalized treatment strategies.
- 23 February 2025
- Published by Elsevier in Computers in Biology and Medicine
- Vol. 188, 109874
Self-supervised learning for graph-structured data in healthcare applications: A comprehensive review
- 23 February 2025
- Published by Elsevier in Computers in Biology and Medicine
- Vol. 188, 109874
Self-supervised learning for graph-structured data in healthcare applications: A comprehensive review
- 2 June 2021
- Published by Springer Nature in Multimedia Tools and Applications
- Vol. 81 (16) , 22789-22806
Automatic source scanner identification using 1D convolutional neural network
- 2 June 2021
- Published by Springer Nature in Multimedia Tools and Applications
- Vol. 81 (16) , 22789-22806
Automatic source scanner identification using 1D convolutional neural network
- 31 December 2020
- Published by International Information and Engineering Technology Association in Traitement du Signal
- Vol. 37 (6) , 881-888
Boosting up Source Scanner Identification Using Wavelets and Convolutional Neural Networks
- 31 December 2020
- Published by International Information and Engineering Technology Association in Traitement du Signal
- Vol. 37 (6) , 881-888
Boosting up Source Scanner Identification Using Wavelets and Convolutional Neural Networks