Franz Kuchling
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Franz Kuchling has a total of 20 co-authors. Here are the top co-authors by number of shared publications:
- Michael Levin
Allen Discovery Center, Tufts University; Medford, MA 02155, USA
4 shared publications - Alexandra Kunen
Allen Discovery Center, Tufts University
1 shared publication - Ananya Pavuluri
Allen Discovery Center at Tufts University, Medford, USA
1 shared publication Angela Tung
Allen Discovery Center at Tufts University, Medford, USA
1 shared publication- Chris Fields
Tufts University
1 shared publication - David Baez-Nieto
Stanley Center of Psychiatric Research, Broad Institute of Harvard and MIT, Cambridge, MA 02142, USA
1 shared publication
Latest Publications
- 26 February 2025
- Published by The Royal Society in Journal of The Royal Society Interface
- Vol. 22 (223) , 20240645
Uncertainty minimization and pattern recognition in Volvox carteri and V. aureus
The field of diverse intelligence explores the capacity of systems without complex brains to dynamically engage with changing environments, seeking fundamental principles of cognition and their evolutionary origins. However, there are many knowledge gaps around a general behavioural directive connecting aneural to neural organisms. This study tests predictions of the computational framework of active inference based on the free energy principle in neuroscience, applied to aneural biological processes. We demonstrate pattern recognition in the green algae Volvox using phototactic experiments with varied light pulse patterns, measuring their phototactic bias as a readout for their preferential ability to detect and adapt to one pattern over another. Results show Volvox adapt more readily to regular patterns than irregular ones and even exhibit memory properties, exhibiting a crucial component of basal intelligence. Pharmacological and electric shock-based interventions and photoadaptation simulations reveal how randomized stimuli interfere with normal photoadaptation through a structured dynamic interplay of colony rotation and calcium-mediated photoreceptor-to-flagellar information transfer, consistent with uncertainty minimization. The detection of functional uncertainty minimization in an aneural organism expands concepts like uncertainty minimization beyond neurons and provides insights and novel intervention tools applicable to other living systems, similar to early learning validations in simpler neural organisms.
- 26 February 2025
- Published by The Royal Society in Journal of The Royal Society Interface
- Vol. 22 (223) , 20240645
Uncertainty minimization and pattern recognition in Volvox carteri and V. aureus
The field of diverse intelligence explores the capacity of systems without complex brains to dynamically engage with changing environments, seeking fundamental principles of cognition and their evolutionary origins. However, there are many knowledge gaps around a general behavioural directive connecting aneural to neural organisms. This study tests predictions of the computational framework of active inference based on the free energy principle in neuroscience, applied to aneural biological processes. We demonstrate pattern recognition in the green algae Volvox using phototactic experiments with varied light pulse patterns, measuring their phototactic bias as a readout for their preferential ability to detect and adapt to one pattern over another. Results show Volvox adapt more readily to regular patterns than irregular ones and even exhibit memory properties, exhibiting a crucial component of basal intelligence. Pharmacological and electric shock-based interventions and photoadaptation simulations reveal how randomized stimuli interfere with normal photoadaptation through a structured dynamic interplay of colony rotation and calcium-mediated photoreceptor-to-flagellar information transfer, consistent with uncertainty minimization. The detection of functional uncertainty minimization in an aneural organism expands concepts like uncertainty minimization beyond neurons and provides insights and novel intervention tools applicable to other living systems, similar to early learning validations in simpler neural organisms.
- Open Access
- 17 January 2024
- Published by Springer Nature in Nature Communications
- Vol. 15 (1) , 1-22
Embryos assist morphogenesis of others through calcium and ATP signaling mechanisms in collective teratogen resistance
Information for organismal patterning can come from a variety of sources. We investigate the possibility that instructive influences for normal embryonic development are provided not only at the level of cells within the embryo, but also via interactions between embryos. To explore this, we challenge groups of embryos with disruptors of normal development while varying group size. Here, we show that Xenopus laevis embryos are much more sensitive to a diverse set of chemical and molecular-biological perturbations when allowed to develop alone or in small groups, than in large groups. Keeping per-embryo exposure constant, we find that increasing the number of exposed embryos in a cohort increases the rate of survival while incidence of defects decreases. This inter-embryo assistance effect is mediated by short-range diffusible signals and involves the P2 ATP receptor. Our data and computational model emphasize that morphogenesis is a collective phenomenon not only at the level of cells, but also of whole bodies, and that cohort size is a crucial variable in studies of ecotoxicology, teratogenesis, and developmental plasticity.
- 17 January 2024
- Published by Springer Nature in Nature Communications
- Vol. 15 (1) , 1-22
Open AccessEmbryos assist morphogenesis of others through calcium and ATP signaling mechanisms in collective teratogen resistance
Information for organismal patterning can come from a variety of sources. We investigate the possibility that instructive influences for normal embryonic development are provided not only at the level of cells within the embryo, but also via interactions between embryos. To explore this, we challenge groups of embryos with disruptors of normal development while varying group size. Here, we show that Xenopus laevis embryos are much more sensitive to a diverse set of chemical and molecular-biological perturbations when allowed to develop alone or in small groups, than in large groups. Keeping per-embryo exposure constant, we find that increasing the number of exposed embryos in a cohort increases the rate of survival while incidence of defects decreases. This inter-embryo assistance effect is mediated by short-range diffusible signals and involves the P2 ATP receptor. Our data and computational model emphasize that morphogenesis is a collective phenomenon not only at the level of cells, but also of whole bodies, and that cohort size is a crucial variable in studies of ecotoxicology, teratogenesis, and developmental plasticity.
- 28 November 2023
- Published by Elsevier in Physics of Life Reviews
- Vol. 48, 31-32
Classification of particles with respect to active inference properties as a path towards formalizing agency Comment on “Path integrals, particular kinds, and strange things” by K. Friston, L. Da Costa, D. A. R. Sakthivadivel, C. Heins, G. A. Pavliotis, M. Ramstead, T. Parr
- 28 November 2023
- Published by Elsevier in Physics of Life Reviews
- Vol. 48, 31-32
Classification of particles with respect to active inference properties as a path towards formalizing agency Comment on “Path integrals, particular kinds, and strange things” by K. Friston, L. Da Costa, D. A. R. Sakthivadivel, C. Heins, G. A. Pavliotis, M. Ramstead, T. Parr
- Open Access
Metacognition as a Consequence of Competing Evolutionary Time Scales
Evolution is full of coevolving systems characterized by complex spatio-temporal interactions that lead to intertwined processes of adaptation. Yet, how adaptation across multiple levels of temporal scales and biological complexity is achieved remains unclear. Here, we formalize how evolutionary multi-scale processing underlying adaptation constitutes a form of metacognition flowing from definitions of metaprocessing in machine learning. We show (1) how the evolution of metacognitive systems can be expected when fitness landscapes vary on multiple time scales, and (2) how multiple time scales emerge during coevolutionary processes of sufficiently complex interactions. After defining a metaprocessor as a regulator with local memory, we prove that metacognition is more energetically efficient than purely object-level cognition when selection operates at multiple timescales in evolution. Furthermore, we show that existing modeling approaches to coadaptation and coevolution—here active inference networks, predator–prey interactions, coupled genetic algorithms, and generative adversarial networks—lead to multiple emergent timescales underlying forms of metacognition. Lastly, we show how coarse-grained structures emerge naturally in any resource-limited system, providing sufficient evidence for metacognitive systems to be a prevalent and vital component of (co-)evolution. Therefore, multi-scale processing is a necessary requirement for many evolutionary scenarios, leading to de facto metacognitive evolutionary outcomes.
Open AccessMetacognition as a Consequence of Competing Evolutionary Time Scales
Evolution is full of coevolving systems characterized by complex spatio-temporal interactions that lead to intertwined processes of adaptation. Yet, how adaptation across multiple levels of temporal scales and biological complexity is achieved remains unclear. Here, we formalize how evolutionary multi-scale processing underlying adaptation constitutes a form of metacognition flowing from definitions of metaprocessing in machine learning. We show (1) how the evolution of metacognitive systems can be expected when fitness landscapes vary on multiple time scales, and (2) how multiple time scales emerge during coevolutionary processes of sufficiently complex interactions. After defining a metaprocessor as a regulator with local memory, we prove that metacognition is more energetically efficient than purely object-level cognition when selection operates at multiple timescales in evolution. Furthermore, we show that existing modeling approaches to coadaptation and coevolution—here active inference networks, predator–prey interactions, coupled genetic algorithms, and generative adversarial networks—lead to multiple emergent timescales underlying forms of metacognition. Lastly, we show how coarse-grained structures emerge naturally in any resource-limited system, providing sufficient evidence for metacognitive systems to be a prevalent and vital component of (co-)evolution. Therefore, multi-scale processing is a necessary requirement for many evolutionary scenarios, leading to de facto metacognitive evolutionary outcomes.
- Open Access
Ion Channel Drugs Suppress Cancer Phenotype in NG108-15 and U87 Cells: Toward Novel Electroceuticals for Glioblastoma
Glioblastoma is a lethal brain cancer that commonly recurs after tumor resection and chemotherapy treatment. Depolarized resting membrane potentials and an acidic intertumoral extracellular pH have been associated with a proliferative state and drug resistance, suggesting that forced hyperpolarization and disruption of proton pumps in the plasma membrane could be a successful strategy for targeting glioblastoma overgrowth. We screened 47 compounds and compound combinations, most of which were ion-modulating, at different concentrations in the NG108-15 rodent neuroblastoma/glioma cell line. A subset of these were tested in the U87 human glioblastoma cell line. A FUCCI cell cycle reporter was stably integrated into both cell lines to monitor proliferation and cell cycle response. Immunocytochemistry, electrophysiology, and a panel of physiological dyes reporting voltage, calcium, and pH were used to characterize responses. The most effective treatments on proliferation in U87 cells were combinations of NS1643 and pantoprazole; retigabine and pantoprazole; and pantoprazole or NS1643 with temozolomide. Marker analysis and physiological dye signatures suggest that exposure to bioelectric drugs significantly reduces proliferation, makes the cells senescent, and promotes differentiation. These results, along with the observed low toxicity in human neurons, show the high efficacy of electroceuticals utilizing combinations of repurposed FDA approved drugs.
Open AccessIon Channel Drugs Suppress Cancer Phenotype in NG108-15 and U87 Cells: Toward Novel Electroceuticals for Glioblastoma
Glioblastoma is a lethal brain cancer that commonly recurs after tumor resection and chemotherapy treatment. Depolarized resting membrane potentials and an acidic intertumoral extracellular pH have been associated with a proliferative state and drug resistance, suggesting that forced hyperpolarization and disruption of proton pumps in the plasma membrane could be a successful strategy for targeting glioblastoma overgrowth. We screened 47 compounds and compound combinations, most of which were ion-modulating, at different concentrations in the NG108-15 rodent neuroblastoma/glioma cell line. A subset of these were tested in the U87 human glioblastoma cell line. A FUCCI cell cycle reporter was stably integrated into both cell lines to monitor proliferation and cell cycle response. Immunocytochemistry, electrophysiology, and a panel of physiological dyes reporting voltage, calcium, and pH were used to characterize responses. The most effective treatments on proliferation in U87 cells were combinations of NS1643 and pantoprazole; retigabine and pantoprazole; and pantoprazole or NS1643 with temozolomide. Marker analysis and physiological dye signatures suggest that exposure to bioelectric drugs significantly reduces proliferation, makes the cells senescent, and promotes differentiation. These results, along with the observed low toxicity in human neurons, show the high efficacy of electroceuticals utilizing combinations of repurposed FDA approved drugs.
- Open Access
- 25 January 2021
- Published by The Royal Society in Philosophical Transactions of the Royal Society B: Biological Sciences
- Vol. 376 (1820) , 20190752
Valuing what happens: a biogenic approach to valence and (potentially) affect
Valence is half of the pair of properties that constitute core affect, the foundation of emotion. But what is valence, and where is it found in the natural world? Currently, this question cannot be answered. The idea that emotion is the body's way of driving the organism to secure its survival, thriving and reproduction runs like a leitmotif from the pathfinding work of Antonio Damasio through four book-length neuroscientific accounts of emotion recently published by the field's leading practitioners. Yet while Damasio concluded 20 years ago that the homeostasis–affect linkage is rooted in unicellular life, no agreement exists about whether even non-human animals with brains experience emotions. Simple neural animals—those less brainy than bees, fruit flies and other charismatic invertebrates—are not even on the radar of contemporary affective research, to say nothing of aneural organisms. This near-sightedness has effectively denied the most productive method available for getting a grip on highly complex biological processes to a scientific domain whose importance for understanding biological decision-making cannot be underestimated. Valence arguably is the fulcrum around which the dance of life revolves. Without the ability to discriminate advantage from harm, life very quickly comes to an end. In this paper, we review the concept of valence, where it came from, the work it does in current leading theories of emotion, and some of the odd features revealed via experiment. We present a biologically grounded framework for investigating valence in any organism and sketch a preliminary pathway to a computational model. This article is part of the theme issue ‘Basal cognition: conceptual tools and the view from the single cell’.
- 25 January 2021
- Published by The Royal Society in Philosophical Transactions of the Royal Society B: Biological Sciences
- Vol. 376 (1820) , 20190752
Open AccessValuing what happens: a biogenic approach to valence and (potentially) affect
Valence is half of the pair of properties that constitute core affect, the foundation of emotion. But what is valence, and where is it found in the natural world? Currently, this question cannot be answered. The idea that emotion is the body's way of driving the organism to secure its survival, thriving and reproduction runs like a leitmotif from the pathfinding work of Antonio Damasio through four book-length neuroscientific accounts of emotion recently published by the field's leading practitioners. Yet while Damasio concluded 20 years ago that the homeostasis–affect linkage is rooted in unicellular life, no agreement exists about whether even non-human animals with brains experience emotions. Simple neural animals—those less brainy than bees, fruit flies and other charismatic invertebrates—are not even on the radar of contemporary affective research, to say nothing of aneural organisms. This near-sightedness has effectively denied the most productive method available for getting a grip on highly complex biological processes to a scientific domain whose importance for understanding biological decision-making cannot be underestimated. Valence arguably is the fulcrum around which the dance of life revolves. Without the ability to discriminate advantage from harm, life very quickly comes to an end. In this paper, we review the concept of valence, where it came from, the work it does in current leading theories of emotion, and some of the odd features revealed via experiment. We present a biologically grounded framework for investigating valence in any organism and sketch a preliminary pathway to a computational model. This article is part of the theme issue ‘Basal cognition: conceptual tools and the view from the single cell’.