Stephen R. Sharpe
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Research Subjects
Research Interests
Stephen R. Sharpe has a total of 258 co-authors. Here are the top co-authors by number of shared publications:
- Markus Riegler
Hawkesbury Institute for the Environment, Western Sydney University Penrith New South Wales Australia
5 shared publications - Jennifer L. Morrow
Hawkesbury Institute for the Environment, Western Sydney University Penrith New South Wales Australia
3 shared publications - Kim Rebecca Blasdell
Australian Centre for Disease Preparedness, Commonwealth Scientific and Industrial Research Organisation (CSIRO), Geelong, VIC, Australia
3 shared publications - Sofia Paraskevopoulou
Genome Competence Center (MF1), Robert Koch Institute, 13353 Berlin, Germany
3 shared publications - Adam J. Hume
Department of Microbiology, Boston University School of Medicine
2 shared publications - Adolfo García-Sastre
Department of Microbiology, Icahn School of Medicine at Mount Sinai, New York, NY, USA
2 shared publications
Latest Publications
- Open Access
- 20 February 2026
- Published by Springer Nature in Journal of High Energy Physics
- Vol. 2026 (2) , 221
Finite-volume formalism for Nππ at maximal isospin
A bstract: We extend the relativistic field theoretic finite-volume formalism to Nππ scattering states at maximal isospin, I = 5 / 2. As in previous work using the relativistic field theory approach, we work to all orders in a generic low-energy effective theory, and determine the quantization condition that relates finite-volume energies to intermediate K matrices, and the integral equations connecting the latter to the physical scattering amplitudes. We discuss the parametrization of the K matrices, and explain in detail the new features that arise in implementing the quantization condition due to the spin of the nucleon in combination with the use of non-degenerate particles. As a concrete example, we provide a sample numerical application including the ∆ resonance in the Nπ subchannel. The extension to the I = 3 / 2 and 1 / 2 channels is more involved, due to mixing with Nπ states, and we do not provide a complete formalism for these cases. We explain why Nπ states cannot be included by treating the nucleon as a pole in p -wave Nπ scattering, an approach that has been successful in studying DD * scattering using the three-particle DDπ formalism. We additionally provide results for all isospins under the assumption of no two-to-three mixing, thereby laying the groundwork for a follow-up paper in which all Nππ → Nπ systems are fully treated. Finally, we study the singularities in Nππ amplitudes arising from Nπππ intermediate states, and find that our subthreshold cutoff functions must be modified to avoid such singularities.
- 20 February 2026
- Published by Springer Nature in Journal of High Energy Physics
- Vol. 2026 (2) , 221
Open AccessFinite-volume formalism for Nππ at maximal isospin
A bstract: We extend the relativistic field theoretic finite-volume formalism to Nππ scattering states at maximal isospin, I = 5 / 2. As in previous work using the relativistic field theory approach, we work to all orders in a generic low-energy effective theory, and determine the quantization condition that relates finite-volume energies to intermediate K matrices, and the integral equations connecting the latter to the physical scattering amplitudes. We discuss the parametrization of the K matrices, and explain in detail the new features that arise in implementing the quantization condition due to the spin of the nucleon in combination with the use of non-degenerate particles. As a concrete example, we provide a sample numerical application including the ∆ resonance in the Nπ subchannel. The extension to the I = 3 / 2 and 1 / 2 channels is more involved, due to mixing with Nπ states, and we do not provide a complete formalism for these cases. We explain why Nπ states cannot be included by treating the nucleon as a pole in p -wave Nπ scattering, an approach that has been successful in studying DD * scattering using the three-particle DDπ formalism. We additionally provide results for all isospins under the assumption of no two-to-three mixing, thereby laying the groundwork for a follow-up paper in which all Nππ → Nπ systems are fully treated. Finally, we study the singularities in Nππ amplitudes arising from Nπππ intermediate states, and find that our subthreshold cutoff functions must be modified to avoid such singularities.
- Open Access
- 4 September 2025
- Published by Wiley in Pest Management Science
- Vol. 82 (1) , 114-124
Injection but not ingestion of a mixed virus suspension in Queensland fruit fly ( Bactrocera tryoni ) shifts persistent covert infection to acute pathology
BACKGROUND: Pest fruit flies commonly carry diverse RNA viruses with unknown host effects that may affect pest management strategies. We investigated effects of horizontally transmitted cripavirus and vertically transmitted iflavirus in Queensland fruit fly that also carried orbivirus, toti‐like virus and xinmovirus as persistent covert infections. RESULTS: Individuals persistently infected with these five viruses had slower egg‐to‐pupa development, lower emergence and lower adult survival under stress than individuals without cripavirus and iflavirus, but persistently infected with the other three viruses. Pupal weight and flight ability did not differ. Cripavirus and iflavirus loads were stable, even under stress, except for the iflavirus load which was higher in flies that died late and lower in flies under stress after cold treatment. Injection into flies of a suspension containing all five viruses caused high mortality within 20 days irrespective of a persistent iflavirus infection. This resulted in an increased iflavirus load 2 days after injection, whereas the load of the other four viruses did not change, suggesting that iflavirus may have caused the mortality. By contrast, feeding the mixed virus suspension did not reduce survival. Although iflavirus was detected immediately after ingestion, its load decreased over 14 days as expected for a maternally transmitted virus. The load of the other four viruses remained unchanged. CONCLUSION: RNA viruses can affect control strategies involving mass‐reared flies such as the sterile insect technique in different ways. Persistent virus infections may moderately influence fly fitness, whereas newly acquired infections may result in increased virus replication and fly mortality. © 2025 The Author(s). Pest Management Science published by John Wiley & Sons Ltd on behalf of Society of Chemical Industry.
- 4 September 2025
- Published by Wiley in Pest Management Science
- Vol. 82 (1) , 114-124
Open AccessInjection but not ingestion of a mixed virus suspension in Queensland fruit fly ( Bactrocera tryoni ) shifts persistent covert infection to acute pathology
BACKGROUND: Pest fruit flies commonly carry diverse RNA viruses with unknown host effects that may affect pest management strategies. We investigated effects of horizontally transmitted cripavirus and vertically transmitted iflavirus in Queensland fruit fly that also carried orbivirus, toti‐like virus and xinmovirus as persistent covert infections. RESULTS: Individuals persistently infected with these five viruses had slower egg‐to‐pupa development, lower emergence and lower adult survival under stress than individuals without cripavirus and iflavirus, but persistently infected with the other three viruses. Pupal weight and flight ability did not differ. Cripavirus and iflavirus loads were stable, even under stress, except for the iflavirus load which was higher in flies that died late and lower in flies under stress after cold treatment. Injection into flies of a suspension containing all five viruses caused high mortality within 20 days irrespective of a persistent iflavirus infection. This resulted in an increased iflavirus load 2 days after injection, whereas the load of the other four viruses did not change, suggesting that iflavirus may have caused the mortality. By contrast, feeding the mixed virus suspension did not reduce survival. Although iflavirus was detected immediately after ingestion, its load decreased over 14 days as expected for a maternally transmitted virus. The load of the other four viruses remained unchanged. CONCLUSION: RNA viruses can affect control strategies involving mass‐reared flies such as the sterile insect technique in different ways. Persistent virus infections may moderately influence fly fitness, whereas newly acquired infections may result in increased virus replication and fly mortality. © 2025 The Author(s). Pest Management Science published by John Wiley & Sons Ltd on behalf of Society of Chemical Industry.
- Open Access
- 20 February 2025
- Published by Microbiology Society in Journal of General Virology
- Vol. 106 (2) , 002076
Characterisation of the virome of Culicoides brevitarsis Kieffer (Diptera: Ceratopogonidae), a vector of bluetongue virus in Australia
Graphical A metatranscriptomics study of a dominant bluetongue virus vector, Culicoides brevitarsis from Australia, identified 10 complete/near-complete viral genomes including 7 novel species.
- 20 February 2025
- Published by Microbiology Society in Journal of General Virology
- Vol. 106 (2) , 002076
Open AccessCharacterisation of the virome of Culicoides brevitarsis Kieffer (Diptera: Ceratopogonidae), a vector of bluetongue virus in Australia
Graphical A metatranscriptomics study of a dominant bluetongue virus vector, Culicoides brevitarsis from Australia, identified 10 complete/near-complete viral genomes including 7 novel species.
- Open Access
- 27 April 2024
- Published by Elsevier in Journal of Invertebrate Pathology
- Vol. 204, 108117
RNA virus diversity and prevalence in field and laboratory populations of melon fly throughout its distribution
- 27 April 2024
- Published by Elsevier in Journal of Invertebrate Pathology
- Vol. 204, 108117
Open AccessRNA virus diversity and prevalence in field and laboratory populations of melon fly throughout its distribution
- Open Access
- 29 November 2023
- Published by Wiley in Molecular Ecology
- Vol. 33 (3)
Transmission mode predicts coinfection patterns of insect‐specific viruses in field populations of the Queensland fruit fly
Insect‐specific viruses (ISVs) can affect insect health and fitness, but can also interact with other insect‐associated microorganisms. Despite this, ISVs are often studied in isolation from each other, in laboratory populations. Consequently, their diversity, prevalence and associations with other viruses in field populations are less known, yet these parameters are important to understanding virus epidemiology. To help address this knowledge gap, we assessed the diversity, prevalence and coinfections of three ISVs (horizontally transmitted cripavirus, biparentally transmitted sigmavirus and maternally transmitted iflavirus) in 29 field populations of Queensland fruit fly, Australia's most significant horticultural pest, in the context of their different transmission modes. We detected new virus variant diversity. In contrast to the very high virus prevalence in laboratory populations, 46.8% of 293 field flies carried one virus and 4.8% had two viruses. Cripavirus and sigmavirus occurred in all regions, while iflavirus was restricted to subtropical and tropical regions. Cripavirus was most prevalent (37.5%), followed by sigmavirus (13.7%) and iflavirus (4.4%). Cripavirus coinfected some flies with either one of the two vertically transmitted viruses. However, sigmavirus did not coinfect individuals with iflavirus. Three different modelling approaches detected negative association patterns between sigmavirus and iflavirus, consistent with the absence of such coinfections in laboratory populations. This may be linked with their maternal transmission and the ineffective paternal transmission of sigmavirus. Furthermore, we found that, unlike sigmavirus and iflavirus, cripavirus load was higher in laboratory than field flies. Laboratory and mass‐rearing conditions may increase ISV prevalence and load due to increased transmission opportunities. We conclude that a combination of field and laboratory studies is needed to uncover ISV interactions and further our understanding of ISV epidemiology.
- 29 November 2023
- Published by Wiley in Molecular Ecology
- Vol. 33 (3)
Open AccessTransmission mode predicts coinfection patterns of insect‐specific viruses in field populations of the Queensland fruit fly
Insect‐specific viruses (ISVs) can affect insect health and fitness, but can also interact with other insect‐associated microorganisms. Despite this, ISVs are often studied in isolation from each other, in laboratory populations. Consequently, their diversity, prevalence and associations with other viruses in field populations are less known, yet these parameters are important to understanding virus epidemiology. To help address this knowledge gap, we assessed the diversity, prevalence and coinfections of three ISVs (horizontally transmitted cripavirus, biparentally transmitted sigmavirus and maternally transmitted iflavirus) in 29 field populations of Queensland fruit fly, Australia's most significant horticultural pest, in the context of their different transmission modes. We detected new virus variant diversity. In contrast to the very high virus prevalence in laboratory populations, 46.8% of 293 field flies carried one virus and 4.8% had two viruses. Cripavirus and sigmavirus occurred in all regions, while iflavirus was restricted to subtropical and tropical regions. Cripavirus was most prevalent (37.5%), followed by sigmavirus (13.7%) and iflavirus (4.4%). Cripavirus coinfected some flies with either one of the two vertically transmitted viruses. However, sigmavirus did not coinfect individuals with iflavirus. Three different modelling approaches detected negative association patterns between sigmavirus and iflavirus, consistent with the absence of such coinfections in laboratory populations. This may be linked with their maternal transmission and the ineffective paternal transmission of sigmavirus. Furthermore, we found that, unlike sigmavirus and iflavirus, cripavirus load was higher in laboratory than field flies. Laboratory and mass‐rearing conditions may increase ISV prevalence and load due to increased transmission opportunities. We conclude that a combination of field and laboratory studies is needed to uncover ISV interactions and further our understanding of ISV epidemiology.
- Open Access
- 26 October 2023
- Published by Microbiology Society in Journal of General Virology
- Vol. 104 (10) , 001906
ICTV Virus Taxonomy Profile: Xinmoviridae 2023
Xinmoviridae is a family of viruses with negative-sense RNA genomes of 9–14 kilobases. Xinmovirids typically infect beneficial and pest insects but their host range has not yet been investigated systematically and hence may be broader. This is a summary of the International Committee on Taxonomy of Viruses (ICTV) Report on the family of Xinmoviridae, which is available at ictv.global/report/xinmoviridae.
- 26 October 2023
- Published by Microbiology Society in Journal of General Virology
- Vol. 104 (10) , 001906
Open AccessICTV Virus Taxonomy Profile: Xinmoviridae 2023
Xinmoviridae is a family of viruses with negative-sense RNA genomes of 9–14 kilobases. Xinmovirids typically infect beneficial and pest insects but their host range has not yet been investigated systematically and hence may be broader. This is a summary of the International Committee on Taxonomy of Viruses (ICTV) Report on the family of Xinmoviridae, which is available at ictv.global/report/xinmoviridae.
- Top Cited PapersOpen Access
- 25 August 2023
- Published by Microbiology Society in Journal of General Virology
- Vol. 104 (8) , 001864-55
Annual (2023) taxonomic update of RNA-directed RNA polymerase-encoding negative-sense RNA viruses (realm Riboviria: kingdom Orthornavirae: phylum Negarnaviricota)
In April 2023, following the annual International Committee on Taxonomy of Viruses (ICTV) ratification vote on newly proposed taxa, the phylum Negarnaviricota was amended and emended. The phylum was expanded by one new family, 14 new genera, and 140 new species. Two genera and 538 species were renamed. One species was moved, and four were abolished. This article presents the updated taxonomy of Negarnaviricota as now accepted by the ICTV.
- 25 August 2023
- Published by Microbiology Society in Journal of General Virology
- Vol. 104 (8) , 001864-55
Top Cited PapersOpen AccessAnnual (2023) taxonomic update of RNA-directed RNA polymerase-encoding negative-sense RNA viruses (realm Riboviria: kingdom Orthornavirae: phylum Negarnaviricota)
In April 2023, following the annual International Committee on Taxonomy of Viruses (ICTV) ratification vote on newly proposed taxa, the phylum Negarnaviricota was amended and emended. The phylum was expanded by one new family, 14 new genera, and 140 new species. Two genera and 538 species were renamed. One species was moved, and four were abolished. This article presents the updated taxonomy of Negarnaviricota as now accepted by the ICTV.
- Open Access
- 28 November 2022
- Published by Springer Nature in Archives of Virology
- Vol. 167 (12) , 2857-2906
2022 taxonomic update of phylum Negarnaviricota (Riboviria: Orthornavirae), including the large orders Bunyavirales and Mononegavirales
In March 2022, following the annual International Committee on Taxonomy of Viruses (ICTV) ratification vote on newly proposed taxa, the phylum Negarnaviricota was amended and emended. The phylum was expanded by two new families (bunyaviral Discoviridae and Tulasviridae), 41 new genera, and 98 new species. Three hundred forty-nine species were renamed and/or moved. The accidentally misspelled names of seven species were corrected. This article presents the updated taxonomy of Negarnaviricota as now accepted by the ICTV.
- 28 November 2022
- Published by Springer Nature in Archives of Virology
- Vol. 167 (12) , 2857-2906
Open Access2022 taxonomic update of phylum Negarnaviricota (Riboviria: Orthornavirae), including the large orders Bunyavirales and Mononegavirales
In March 2022, following the annual International Committee on Taxonomy of Viruses (ICTV) ratification vote on newly proposed taxa, the phylum Negarnaviricota was amended and emended. The phylum was expanded by two new families (bunyaviral Discoviridae and Tulasviridae), 41 new genera, and 98 new species. Three hundred forty-nine species were renamed and/or moved. The accidentally misspelled names of seven species were corrected. This article presents the updated taxonomy of Negarnaviricota as now accepted by the ICTV.
- 23 February 2022
- Published by Elsevier in Journal of Invertebrate Pathology
- Vol. 189, 107732
Corrigendum to “Tephritid fruit flies have a large diversity of co-occurring RNA viruses”. [J. Invertebrate Pathol. 186 (2021) 107569]
- 23 February 2022
- Published by Elsevier in Journal of Invertebrate Pathology
- Vol. 189, 107732
Corrigendum to “Tephritid fruit flies have a large diversity of co-occurring RNA viruses”. [J. Invertebrate Pathol. 186 (2021) 107569]
- 1 November 2021
- Published by Elsevier in Journal of Invertebrate Pathology
- Vol. 186, 107569
Tephritid fruit flies have a large diversity of co-occurring RNA viruses
- 1 November 2021
- Published by Elsevier in Journal of Invertebrate Pathology
- Vol. 186, 107569
Tephritid fruit flies have a large diversity of co-occurring RNA viruses