JPJuan Alejandro Perdomo

Juan Alejandro Perdomo

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Juan Alejandro Perdomo has a total of 37 co-authors. Here are the top co-authors by number of shared publications:


Latest Publications

  • Open Access

    Down‐regulation of wheat Rubisco activase isoforms expression by virus‐induced gene silencing

    by Juan Alejandro Perdomo, Joanna C. Scales, Wing‐Sham Lee, Kostya Kanyuka, Elizabete Carmo‐Silva

    Rubisco activase (Rca) is an essential photosynthetic enzyme that removes inhibitors from the catalytic sites of the carboxylating enzyme Rubisco. In wheat, Rca is composed of one longer 46 kDa α‐isoform and two shorter 42 kDa β‐isoforms encoded by the genes TaRca1 and TaRca2. TaRca1 produces a single transcript from which a short 1β‐isoform is expressed, whereas two alternative transcripts are generated from TaRca2 directing expression of either a long 2α‐isoform or a short 2β‐isoform. The 2β isoform is similar but not identical to 1β. Here, virus‐induced gene silencing (VIGS) was used to silence the different TaRca transcripts. Abundance of the transcripts and the respective protein isoforms was then evaluated in the VIGS‐treated and control plants. Remarkably, treatment with the construct specifically targeting TaRca1 efficiently decreased expression not only of TaRca1 but also of the two alternative TaRca2 transcripts. Similarly, specific targeting of the TaRca2 transcript encoding a long isoform TaRca2α resulted in silencing of both TaRca2 alternative transcripts. The corresponding protein isoforms decreased in abundance. These findings indicate concomitant down‐regulation of TaRca1 and TaRca2 at both transcript and protein levels and may impact the feasibility of altering the relative abundance of Rca isoforms in wheat.


  • Open Access

    The relative abundance of wheat Rubisco activase isoforms is post-transcriptionally regulated

    by Juan Alejandro Perdomo, Peter Buchner, Elizabete Carmo-Silva

    Diurnal rhythms and light availability affect transcription–translation feedback loops that regulate the synthesis of photosynthetic proteins. The CO2-fixing enzyme Rubisco is the most abundant protein in the leaves of major crop species and its activity depends on interaction with the molecular chaperone Rubisco activase (Rca). InTriticum aestivumL. (wheat), three Rca isoforms are present that differ in their regulatory properties. Here, we tested the hypothesis that the relative abundance of the redox-sensitive and redox-insensitive Rca isoforms could be differentially regulated throughout light–dark diel cycle in wheat. WhileTaRca1-βexpression was consistently negligible throughout the day, transcript levels of bothTaRca2-βandTaRca2-αwere higher and increased at the start of the day, with peak levels occurring at the middle of the photoperiod. Abundance of TaRca-β protein was maximal 1.5 h after the peak inTaRca2-βexpression, but the abundance of TaRca-α remained constant during the entire photoperiod. The redox-sensitive TaRca-α isoform was less abundant, representing 85% of the redox-insensitive TaRca-β at the transcript level and 12.5% at the protein level. Expression of Rubisco large and small subunit genes did not show a consistent pattern throughout the diel cycle, but the abundance of Rubisco decreased by up to 20% during the dark period in fully expanded wheat leaves. These results, combined with a lack of correlation between transcript and protein abundance for both Rca isoforms and Rubisco throughout the entire diel cycle, suggest that the abundance of these photosynthetic enzymes is post-transcriptionally regulated.


  • Open Access

    Rubisco activation by wheat Rubisco activase isoform 2β is insensitive to inhibition by ADP

    by Juan Alejandro Perdomo, Gustaf E. Degen, Dawn Worrall, Elizabete Carmo-Silva

    Rubisco activase (Rca) is a catalytic chaperone that remodels the active site, promotes the release of inhibitors and restores catalytic competence to Rubisco. Rca activity and its consequent effect on Rubisco activation and photosynthesis are modulated by changes to the chloroplast environment induced by fluctuations in light levels that reach the leaf, including redox status and adenosine diphosphate (ADP)/adenosine triphosphate (ATP) ratio. The Triticum aestivum (wheat) genome encodes for three Rca protein isoforms: 1β (42.7 kDa), 2β (42.2 kDa) and 2α (46.0 kDa). The regulatory properties of these isoforms were characterised by measuring rates of Rubisco activation and ATP hydrolysis by purified recombinant Rca proteins in the presence of physiological ADP/ATP ratios. ATP hydrolysis by all three isoforms was sensitive to inhibition by increasing amounts of ADP in the assay. In contrast, Rubisco activation activity of Rca 2β was insensitive to ADP inhibition, while Rca 1β and 2α were inhibited. Two double and one quadruple site-directed mutants were designed to elucidate if differences in the amino acid sequences between Rca 1β and 2β could explain the differences in ADP sensitivity. Changing two amino acids in Rca 2β to the corresponding residues in 1β (T358K & Q362E) resulted in significant inhibition of Rubisco activation in presence of ADP. The results show that the wheat Rca isoforms differ in their regulatory properties and that amino acid changes in the C domain influence ADP sensitivity. Advances in the understanding of Rubisco regulation will aid efforts to improve the efficiency of photosynthetic CO2 assimilation.


  • Growth capacity in wild tomatoes and relatives correlates with original climate in arid and semi-arid species

    by Miquel À. Conesa, Christopher D. Muir, Emilio J. Roldán, Arántzazu Molins, J. Alejandro Perdomo, Jeroni Galmés


  • Top Cited Papers
    Open Access

    Rubisco and Rubisco Activase Play an Important Role in the Biochemical Limitations of Photosynthesis in Rice, Wheat, and Maize under High Temperature and Water Deficit

    by Juan A. Perdomo, Sebastià Capó-Bauçà, Elizabete Carmo-Silva, Jeroni Galmés

    To understand the effect of heat and drought on three major cereal crops, the physiological and biochemical (i.e. metabolic) factors affecting photosynthesis were examined in rice, wheat and maize plants grown under long-term water deficit (WD), high temperature (HT) and the combination of both stresses (HT-WD). Diffusional limitations to photosynthesis prevailed under WD for the C3 species, rice and wheat. Conversely, biochemical limitations prevailed under WD for the C4 species, maize, under HT for all three species, and under HT-WD in rice and maize. These biochemical limitations to photosynthesis were associated with Rubisco activity that was highly impaired at HT and under HT-WD in the three species. Decreases in Rubisco activation were unrelated to the amount of Rubisco and Rubisco activase (Rca), but were probably caused by inhibition of Rca activity, as suggested by the mutual decrease and positive correlation between Rubisco activation state and the rate of electron transport. Decreased Rubisco activation at HT was associated with biochemical limitation of net CO2 assimilation rate (AN). Overall, the results highlight the importance of Rubisco as a target for improving the photosynthetic performance of these C3 (wheat and rice) and C4 (maize) cereal crops under increasingly variable and warmer climates.


  • Open Access

    Acclimation of Biochemical and Diffusive Components of Photosynthesis in Rice, Wheat, and Maize to Heat and Water Deficit: Implications for Modeling Photosynthesis

    by Juan A. Perdomo, Elizabete Carmo-Silva, Carmen Hermida-Carrera, Jaume Flexas, Jeroni Galmés

    The impact of the combined effects of heat stress, increased vapor pressure deficit (VPD) and water deficit on the physiology of major crops needs to be better understood to help identifying the expected negative consequences of climate change and heat waves on global agricultural productivity. To address this issue, rice, wheat and maize plants were grown under control temperature (CT, 25°C, VPD 1.8 kPa), and a high temperature (HT, 38°C, VPD 3.5 kPa), both under well-watered (WW) and water deficit (WD) conditions. Gas-exchange measurements showed that, in general, WD conditions affected the leaf conductance to CO2, while growth at HT had a more marked effect on the biochemistry of photosynthesis. When combined, HT and WD had an additive effect in limiting photosynthesis. The negative impacts of the imposed treatments on the processes governing leaf gas-exchange were species-dependent. Wheat presented a higher sensitivity while rice and maize showed a higher acclimation potential to increased temperature. Rubisco and PEPC kinetic constants determined in vitro at 25°C and 38°C were used to estimate Vcmax, Jmax and Vpmax in the modeling of C3 and C4 photosynthesis. The results here obtained reiterate the need to use species-specific and temperature-specific values for Rubisco and PEPC kinetic constants for a precise parameterization of the photosynthetic response to changing environmental conditions in different crop species.


  • Assessment of the role of silicon in the Cu-tolerance of the C4 grass Spartina densiflora

    by Enrique Mateos-Naranjo, Alexander Gallé, Igor Florez-Sarasa, Juan Alejandro Perdomo, Jeroni Galmés, Miquel Ribas-Carbó, Jaume Flexas


  • Temperature dependence of in vitro Rubisco kinetics in species of Flaveria with different photosynthetic mechanisms

    by Juan Alejandro Perdomo, Amanda P. Cavanagh, David S. Kubien, Jeroni Galmés

    There is general consensus in the literature that plants with different photosynthetic mechanisms (i.e. C3 vs. C4) have Rubiscos characterised by different kinetic performances. However, potential differences in the temperature dependencies of Rubisco kinetic parameters between C3 and C4 plants are uncertain. Accordingly, six species of Flaveria with contrasting photosynthetic mechanisms (C3, C3/C4 and C4) were selected and their Rubisco Michaelis–Menten constants for CO2 and RuBP (K c and K RuBP), carboxylase catalytic turnover rate ( \({k_{\text{cat}}}^{\text{c}}\) ) and CO2/O2 specificity factor (S c/o) were measured between 10 and 40 °C. The results confirmed different Rubisco characteristics between C3 and C4 plants. Rubisco from the C3 species had higher E a for K c \({k_{\text{cat}}}^{\text{c}}\) than that from C4 species, which were translated into differences in the temperature response of the carboxylase catalytic efficiency ( \({k_{\text{cat}}}^{\text{c}}\) /K c). However, E a did not differ for S c/o or K RuBP. Although a mechanism remains uncertain, it appears that the Asp/Glu-149-Ala and Met-309-Ile substitutions lead to differences in the temperature responses of catalysis between C3 and C4 Rubiscos in Flaveria. Therefore, the above observations are consistent with the fact that C3 species have a higher photosynthetic efficiency and ecological dominance in cool environments, with respect to C4 species in temperate environments.


  • Effects of long‐term individual and combined water and temperature stress on the growth of rice, wheat and maize: relationship with morphological and physiological acclimation

    by Juan Alejandro Perdomo, Miquel À. Conesa, Hipólito Medrano, Miquel Ribas‐Carbó, Jeroni Galmés

    This study evaluates the long‐term individual and combined effects of high temperature (HT) and water deficit (WD) stress on plant growth, leaf gas‐exchange and water use efficiency in cultivars of the three most important crops worldwide, rice, wheat and maize. Total plant biomass (Bt) accumulation decreased under all treatments, being the combined HT–WD treatment the most detrimental in all three species. Although decreases in Bt correlated with adjustments in biomass allocation patterns (i.e. the leaf area ratio), most of the variation observed in Bt was explained by changes in leaf gas exchange parameters. Thus, integrated values of leaf carbon balance obtained from daily course measurements of photosynthesis and respiration were better predictors of plant growth than the instantaneous measurements of leaf gas exchange. Leaf water use efficiency, assessed both by gas exchange and carbon isotope measurements, was negatively correlated with Bt under WD, but not under the combined WD and HT treatment. A comparative analysis of the negative effects of single and combined stresses on the main parameters showed an additive component for WD and HT in rice and maize, in contrast to wheat. Overall, the results of the specific cultivars included in the study suggest that the species native climate plays a role shaping the species acclimation potential to the applied stresses. In this regard, wheat, originated in a cold climate, was the most affected species, which foretells a higher affectation of this crop due to climate change.


  • Rubisco catalytic properties optimized for present and future climatic conditions

    by J. Galmés, M.à. Conesa, A. Díaz-Espejo, A. Mir, J.A. Perdomo, Ü. Niinemets, J. Flexas