Isabel Bárcenas-Reyes
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Research Subjects
Research Interests
Isabel Bárcenas-Reyes has a total of 36 co-authors. Here are the top co-authors by number of shared publications:
- Germinal Jorge Cantó-Alarcón
Facultad de Ciencias Naturales, Universidad Autónoma de Querétaro, Querétaro, Qro., México
4 shared publications - José-Joel González-Barbosa
Instituto Politécnico Nacional
4 shared publications - Alfonso Ramírez-Pedraza
Instituto Politécnico Nacional
3 shared publications - Feliciano Milián-Suazo
Faculty of Natural Sciences, Autonomous University of Querétaro, Querétaro
3 shared publications - Francisco-Javier Ornelas-Rodriguez
Instituto Politécnico Nacional
3 shared publications - Juan Bautista Hurtado-Ramos
CICATA Unidad Querétaro, Instituto Politécnico Nacional, Santiago de Querétaro 76090, Mexico
3 shared publications
Latest Publications
- Open Access
A Scalable Multi-Sensor Vision Framework for Automated Bat Monitoring and 3D Habitat Analysis
Automated wildlife monitoring systems are essential for studying bat populations in natural environments, where nocturnal behavior, high flight speeds, and limited illumination make conventional observation difficult. This paper presents a modular multi-sensor vision system that integrates RGB, near-infrared (NIR), and depth cameras for automated bat monitoring. The proposed architecture consists of one main module and two secondary modules that can be configured into multiple operating modes according to monitoring requirements. The main module operates independently to perform real-time habitat reconstruction using an integrated depth camera or bat detection using a YOLO-based model. When combined with one secondary module, it forms a stereo vision system for three-dimensional localization; when combined with both secondary modules, it generates panoramic images that substantially expand the field of view for monitoring large cave entrances and other complex environments. The proposed modular architecture enables flexible deployment while supporting multiple sensing configurations within a single platform. The modular design provides scalability, geometric consistency through multi-sensor calibration, and flexible deployment, enabling accurate bat detection, habitat reconstruction, and wide-area monitoring within a unified sensing framework. The proposed system provides a versatile and scalable solution for adapting wildlife monitoring to different environmental conditions and observation scenarios. Experimental results demonstrate a detection precision of 0.893, a panoramic field of view of 119°, and real-time processing at 60 fps, validating the effectiveness of the proposed modular architecture.
Open AccessA Scalable Multi-Sensor Vision Framework for Automated Bat Monitoring and 3D Habitat Analysis
Automated wildlife monitoring systems are essential for studying bat populations in natural environments, where nocturnal behavior, high flight speeds, and limited illumination make conventional observation difficult. This paper presents a modular multi-sensor vision system that integrates RGB, near-infrared (NIR), and depth cameras for automated bat monitoring. The proposed architecture consists of one main module and two secondary modules that can be configured into multiple operating modes according to monitoring requirements. The main module operates independently to perform real-time habitat reconstruction using an integrated depth camera or bat detection using a YOLO-based model. When combined with one secondary module, it forms a stereo vision system for three-dimensional localization; when combined with both secondary modules, it generates panoramic images that substantially expand the field of view for monitoring large cave entrances and other complex environments. The proposed modular architecture enables flexible deployment while supporting multiple sensing configurations within a single platform. The modular design provides scalability, geometric consistency through multi-sensor calibration, and flexible deployment, enabling accurate bat detection, habitat reconstruction, and wide-area monitoring within a unified sensing framework. The proposed system provides a versatile and scalable solution for adapting wildlife monitoring to different environmental conditions and observation scenarios. Experimental results demonstrate a detection precision of 0.893, a panoramic field of view of 119°, and real-time processing at 60 fps, validating the effectiveness of the proposed modular architecture.
- Open Access
Deep Learning for Wildlife Monitoring: Near-Infrared Bat Detection Using YOLO Frameworks
Bats are ecologically vital mammals, serving as pollinators, seed dispersers, and bioindicators of ecosystem health. Many species inhabit natural caves, which offer optimal conditions for survival but present challenges for direct ecological monitoring due to their dark, complex, and inaccessible environments. Traditional monitoring methods, such as mist-netting, are invasive and limited in scope, highlighting the need for non-intrusive alternatives. In this work, we present a portable multisensor platform designed to operate in underground habitats. The system captures multimodal data, including near-infrared (NIR) imagery, ultrasonic audio, 3D structural data, and RGB video. Focusing on NIR imagery, we evaluate the effectiveness of the YOLO object detection framework for automated bat detection and counting. Experiments were conducted using a dataset of NIR images collected in natural shelters. Three YOLO variants (v10, v11, and v12) were trained and tested on this dataset. The models achieved high detection accuracy, with YOLO v12m reaching a mean average precision (mAP) of 0.981. These results demonstrate that combining NIR imaging with deep learning enables accurate and non-invasive monitoring of bats in challenging environments. The proposed approach offers a scalable tool for ecological research and conservation, supporting population assessment and behavioral studies without disturbing bat colonies.
Open AccessDeep Learning for Wildlife Monitoring: Near-Infrared Bat Detection Using YOLO Frameworks
Bats are ecologically vital mammals, serving as pollinators, seed dispersers, and bioindicators of ecosystem health. Many species inhabit natural caves, which offer optimal conditions for survival but present challenges for direct ecological monitoring due to their dark, complex, and inaccessible environments. Traditional monitoring methods, such as mist-netting, are invasive and limited in scope, highlighting the need for non-intrusive alternatives. In this work, we present a portable multisensor platform designed to operate in underground habitats. The system captures multimodal data, including near-infrared (NIR) imagery, ultrasonic audio, 3D structural data, and RGB video. Focusing on NIR imagery, we evaluate the effectiveness of the YOLO object detection framework for automated bat detection and counting. Experiments were conducted using a dataset of NIR images collected in natural shelters. Three YOLO variants (v10, v11, and v12) were trained and tested on this dataset. The models achieved high detection accuracy, with YOLO v12m reaching a mean average precision (mAP) of 0.981. These results demonstrate that combining NIR imaging with deep learning enables accurate and non-invasive monitoring of bats in challenging environments. The proposed approach offers a scalable tool for ecological research and conservation, supporting population assessment and behavioral studies without disturbing bat colonies.
- Open Access
- 30 June 2025
- Published by Universidad de Montevideo in Memoria. Investigaciones en Ingenieria
- No. 28,p. 110-125
Explorando las Profundidades
Nuestro objetivo es proporcionar información detallada y precisa sobre las cuevas y la dinámica de la población de quirópteros (murciélagos) que las habitan nos permite comprender las dimensiones y requerimientos del hábitat, monitorear tamaños de poblaciones, desarrollar planes de manejo y conservación específicos. Por tanto, aumentamos nuestro entendimiento de los murciélagos con su entorno y mejoramos la prevención de enfermedades zoonóticas. En este artículo presentamos el desarrollo de una plataforma portátil multisensor, compuesta por una cámara RGB, dos cámaras infrarrojas, sensores inerciales y un par de luces infrarrojas. Esta plataforma permite la detección de quirópteros y la reconstrucción de las cuevas donde habitan. Ejecuta un algoritmo en tiempo real, generando un mapa de nube de puntos y facilitando la observación y detección de los quirópteros. La plataforma fue probada en condiciones reales en diferentes cuevas del estado de Guanajuato por personal del “Comité Estatal para el Fomento y la Protección Pecuaria”.
- 30 June 2025
- Published by Universidad de Montevideo in Memoria. Investigaciones en Ingenieria
- No. 28,p. 110-125
Open AccessExplorando las Profundidades
Nuestro objetivo es proporcionar información detallada y precisa sobre las cuevas y la dinámica de la población de quirópteros (murciélagos) que las habitan nos permite comprender las dimensiones y requerimientos del hábitat, monitorear tamaños de poblaciones, desarrollar planes de manejo y conservación específicos. Por tanto, aumentamos nuestro entendimiento de los murciélagos con su entorno y mejoramos la prevención de enfermedades zoonóticas. En este artículo presentamos el desarrollo de una plataforma portátil multisensor, compuesta por una cámara RGB, dos cámaras infrarrojas, sensores inerciales y un par de luces infrarrojas. Esta plataforma permite la detección de quirópteros y la reconstrucción de las cuevas donde habitan. Ejecuta un algoritmo en tiempo real, generando un mapa de nube de puntos y facilitando la observación y detección de los quirópteros. La plataforma fue probada en condiciones reales en diferentes cuevas del estado de Guanajuato por personal del “Comité Estatal para el Fomento y la Protección Pecuaria”.
- 30 April 2024
- Published by Springer Nature
- p. 28-40
Projector-Camera Calibration Method Based on Pattern Geometric Constraints
- 30 April 2024
- Published by Springer Nature
- p. 28-40
Projector-Camera Calibration Method Based on Pattern Geometric Constraints
- Open Access
- 30 January 2024
- Published by PAGEPress Publications in Geospatial Health
- Vol. 19 (1)
Spatial-temporal risk factors in the occurrence of rabies in Mexico
Rabies is a zoonotic disease that affects livestock worldwide. The distribution of rabies is highly correlated with the distribution of the vampire bat Desmodus rotundus, the main vector of the disease. In this study, climatic, topographic, livestock population, vampire distribution and urban and rural zones were used to estimate the risk for presentation of cases of rabies in Mexico by co- Kriging interpolation. The highest risk for the presentation of cases is in the endemic areas of the disease, i.e. the States of Yucatán, Chiapas, Campeche, Quintana Roo, Tabasco, Veracruz, San Luis Potosí, Nayarit and Baja California Sur. A transition zone for cases was identified across northern Mexico, involving the States of Sonora, Sinaloa, Chihuahua, and Durango. The variables topography, vampire distribution, bovine population and rural zones are the most important to explain the risk of cases in livestock. This study provides robust estimates of risk and spread of rabies based on geostatistical methods. The information presented should be useful for authorities responsible of public and animal health when they plan and establish strategies preventing the spread of rabies into rabies-free regions of México.
- 30 January 2024
- Published by PAGEPress Publications in Geospatial Health
- Vol. 19 (1)
Open AccessSpatial-temporal risk factors in the occurrence of rabies in Mexico
Rabies is a zoonotic disease that affects livestock worldwide. The distribution of rabies is highly correlated with the distribution of the vampire bat Desmodus rotundus, the main vector of the disease. In this study, climatic, topographic, livestock population, vampire distribution and urban and rural zones were used to estimate the risk for presentation of cases of rabies in Mexico by co- Kriging interpolation. The highest risk for the presentation of cases is in the endemic areas of the disease, i.e. the States of Yucatán, Chiapas, Campeche, Quintana Roo, Tabasco, Veracruz, San Luis Potosí, Nayarit and Baja California Sur. A transition zone for cases was identified across northern Mexico, involving the States of Sonora, Sinaloa, Chihuahua, and Durango. The variables topography, vampire distribution, bovine population and rural zones are the most important to explain the risk of cases in livestock. This study provides robust estimates of risk and spread of rabies based on geostatistical methods. The information presented should be useful for authorities responsible of public and animal health when they plan and establish strategies preventing the spread of rabies into rabies-free regions of México.
- Open Access
Occurrence of Giardia duodenalis in Cats from Queretaro and the Risk to Public Health
Giardia is a protozoan that affects humans as well as a wide range of domestic species. It is distributed worldwide, and the highest frequency is seen in developing countries. Due to the potential for domestic cats to be carriers of this parasite and subsequently transmit the infection to humans, it is important to know the risk of transmission. For this reason, the objective of this study was to determine the frequency of this parasite in the cat population of the city of Santiago de Queretaro, Mexico, and identify the assemblages present to determine the role this host plays in public health, this being the first study of its type to be performed in the country. This was a cross-sectional study during which 200 fecal samples were collected from cats of both sexes and varying ages and strata of origin. The samples were analyzed by microscopy following the flotation technique, having obtained a general frequency of 25%. Giardia cysts were found at higher frequency in pasty stools. The assemblages found were zoonotic, specifically assemblage A, which suggests that the cat poses an important risk for the dissemination of the parasite to humans, making it an important public health problem.
Open AccessOccurrence of Giardia duodenalis in Cats from Queretaro and the Risk to Public Health
Giardia is a protozoan that affects humans as well as a wide range of domestic species. It is distributed worldwide, and the highest frequency is seen in developing countries. Due to the potential for domestic cats to be carriers of this parasite and subsequently transmit the infection to humans, it is important to know the risk of transmission. For this reason, the objective of this study was to determine the frequency of this parasite in the cat population of the city of Santiago de Queretaro, Mexico, and identify the assemblages present to determine the role this host plays in public health, this being the first study of its type to be performed in the country. This was a cross-sectional study during which 200 fecal samples were collected from cats of both sexes and varying ages and strata of origin. The samples were analyzed by microscopy following the flotation technique, having obtained a general frequency of 25%. Giardia cysts were found at higher frequency in pasty stools. The assemblages found were zoonotic, specifically assemblage A, which suggests that the cat poses an important risk for the dissemination of the parasite to humans, making it an important public health problem.
- Open Access
Vaccination Strategies in a Potential Use of the Vaccine against Bovine Tuberculosis in Infected Herds
Bovine tuberculosis (bTB) is a disease of cattle that represents a risk to public health and causes severe economic losses to the livestock industry. Recently, one of the strategies recommended for reducing the prevalence of the disease in animals is the use of the BCG vaccine, alone or in combination with proteins. It has been shown that the vaccine elicits a strong immune response, downsizes the number of animals with visible lesions, and reduces the rate of infection as well as the bacillary count. This paper, based on scientific evidence, makes suggestions about some practical vaccination alternatives that can be used in infected herds to reduce bTB prevalence, considering BCG strains, vaccine doses, routes of application, and age of the animals. Our conclusion is that vaccination is a promising alternative to be included in current control programs in underdeveloped countries to reduce the disease burden.
Open AccessVaccination Strategies in a Potential Use of the Vaccine against Bovine Tuberculosis in Infected Herds
Bovine tuberculosis (bTB) is a disease of cattle that represents a risk to public health and causes severe economic losses to the livestock industry. Recently, one of the strategies recommended for reducing the prevalence of the disease in animals is the use of the BCG vaccine, alone or in combination with proteins. It has been shown that the vaccine elicits a strong immune response, downsizes the number of animals with visible lesions, and reduces the rate of infection as well as the bacillary count. This paper, based on scientific evidence, makes suggestions about some practical vaccination alternatives that can be used in infected herds to reduce bTB prevalence, considering BCG strains, vaccine doses, routes of application, and age of the animals. Our conclusion is that vaccination is a promising alternative to be included in current control programs in underdeveloped countries to reduce the disease burden.
- Open Access
- 1 April 2022
- Published by Frontiers Media SA in Frontiers in Veterinary Science
- Vol. 9, 800735
Descriptive and Time-Series Analysis of Rabies in Different Animal Species in Mexico
The spatio-temporal epidemiology of rabies has related the influence of environmental factors and anthropogenic changes on the movements of the hematophagous bat Desmodus rotundus. In Mexico, D. rotundus is the main transmitter of the rabies virus for different livestock species, modifying annually the fluctuation of the number of cases of rabies and its dissemination in subtropical areas and regions considered free of the disease. The purpose of this study was to perform a descriptive analysis of the distribution of cases of rabies in Mexico, and to perform a time-series analysis to evaluate stationarity and to predict the number of cases for the following year. A total of 3,469 cases were reported in the period of interest, of which the 89.1% occurred in cattle, 4.3% in horses, 1.5% in sheep, 0.6% in goats, 0.01% in pig, 3.1% in vampire bats, 0.3% in cervids, 0.2% in skunks, 0.1% in insectivorous bats, 0.1% in foxes, 0.1% in buffaloes, and 0.02% in coatis; 0.5% were not identified. The most frequent antigenic variants reported were AgV11, AgV5, and AgV3, associated with D. rotundus. The distribution of cases in bats correlates with the distribution of cases in domestic and wild animals; however, cases were observed in wild species in non-endemic areas of Mexico, like the State of Chihuahua. The additive model used in the time-series analysis showed a seasonal pattern with a peak of cases at the beginning of each year, from January to March. The model showed a good predicting value; the Pearson correlation coefficient R2 was 0.705. The highest probability for the occurrence of rabies cases in the different species estimated by Ordinary Kriging was in the coast of the Gulf of Mexico, involving the states of Tamaulipas, Veracruz, Tabasco, Chiapas, and Yucatan. This study confirms that rabies in domestic and wild species is endemic in tropical and subtropical areas—however, cases have been observed in new geographic areas—and provides useful information to support actions to stop the spread of the rabies virus or the reservoir, and for planning vaccination strategies considering time and place.
- 1 April 2022
- Published by Frontiers Media SA in Frontiers in Veterinary Science
- Vol. 9, 800735
Open AccessDescriptive and Time-Series Analysis of Rabies in Different Animal Species in Mexico
The spatio-temporal epidemiology of rabies has related the influence of environmental factors and anthropogenic changes on the movements of the hematophagous bat Desmodus rotundus. In Mexico, D. rotundus is the main transmitter of the rabies virus for different livestock species, modifying annually the fluctuation of the number of cases of rabies and its dissemination in subtropical areas and regions considered free of the disease. The purpose of this study was to perform a descriptive analysis of the distribution of cases of rabies in Mexico, and to perform a time-series analysis to evaluate stationarity and to predict the number of cases for the following year. A total of 3,469 cases were reported in the period of interest, of which the 89.1% occurred in cattle, 4.3% in horses, 1.5% in sheep, 0.6% in goats, 0.01% in pig, 3.1% in vampire bats, 0.3% in cervids, 0.2% in skunks, 0.1% in insectivorous bats, 0.1% in foxes, 0.1% in buffaloes, and 0.02% in coatis; 0.5% were not identified. The most frequent antigenic variants reported were AgV11, AgV5, and AgV3, associated with D. rotundus. The distribution of cases in bats correlates with the distribution of cases in domestic and wild animals; however, cases were observed in wild species in non-endemic areas of Mexico, like the State of Chihuahua. The additive model used in the time-series analysis showed a seasonal pattern with a peak of cases at the beginning of each year, from January to March. The model showed a good predicting value; the Pearson correlation coefficient R2 was 0.705. The highest probability for the occurrence of rabies cases in the different species estimated by Ordinary Kriging was in the coast of the Gulf of Mexico, involving the states of Tamaulipas, Veracruz, Tabasco, Chiapas, and Yucatan. This study confirms that rabies in domestic and wild species is endemic in tropical and subtropical areas—however, cases have been observed in new geographic areas—and provides useful information to support actions to stop the spread of the rabies virus or the reservoir, and for planning vaccination strategies considering time and place.
- Open Access
Prime Vaccination with Chitosan-Coated Phipps BCG and Boosting with CFP-PLGA against Tuberculosis in a Goat Model
Attempts to improve the immune response and efficacy of vaccines against tuberculosis in cattle, goats, and other animal species have been the focus of research in this field during the last two decades. Improving the vaccine efficacy is essential prior to running long-lasting and expensive field trials. Studies have shown that vaccine protocols utilizing boosting with proteins improve the vaccine efficacy. The use of polymers such as chitosan and PolyLactic-co-Glycolic Acid (PLGA) improves the immune response against different diseases by improving the interaction of antigens with the cellular immune system and modulating the host immune response. This study shows that the prime BCG vaccination, boosted with a culture filtrate protein (CFP), alone or in combination with chitosan and PolyLactic-co-Glycolic Acid (PLGA), have the potential to reduce tuberculosis (TB) dissemination by reducing the number of animals with lesions, the number of lesions per animal, and the size of the lesions in vaccinated animals, compared with those not vaccinated or those vaccinated with BCG alone. The vaccinated groups showed significantly higher Interferon-γ levels in the blood compared to the control, nonvaccinated group after vaccination, after boosting, and after the challenge with the wild-type Mycobacterium bovis strain.
Open AccessPrime Vaccination with Chitosan-Coated Phipps BCG and Boosting with CFP-PLGA against Tuberculosis in a Goat Model
Attempts to improve the immune response and efficacy of vaccines against tuberculosis in cattle, goats, and other animal species have been the focus of research in this field during the last two decades. Improving the vaccine efficacy is essential prior to running long-lasting and expensive field trials. Studies have shown that vaccine protocols utilizing boosting with proteins improve the vaccine efficacy. The use of polymers such as chitosan and PolyLactic-co-Glycolic Acid (PLGA) improves the immune response against different diseases by improving the interaction of antigens with the cellular immune system and modulating the host immune response. This study shows that the prime BCG vaccination, boosted with a culture filtrate protein (CFP), alone or in combination with chitosan and PolyLactic-co-Glycolic Acid (PLGA), have the potential to reduce tuberculosis (TB) dissemination by reducing the number of animals with lesions, the number of lesions per animal, and the size of the lesions in vaccinated animals, compared with those not vaccinated or those vaccinated with BCG alone. The vaccinated groups showed significantly higher Interferon-γ levels in the blood compared to the control, nonvaccinated group after vaccination, after boosting, and after the challenge with the wild-type Mycobacterium bovis strain.