Current Organizations / Institutes

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Previous Organizations / Institutes

The organizations / institutes from the scholar's other articles in the past ten years


Patrick Onen has a total of 72 co-authors. Here are the top co-authors by number of shared publications:


Latest Publications

  • Antimicrobial Activity of Isolated Compounds from Zanthoxylum gilletii Stem Bark Extract

    by Eric Niringiyimana, Hannington Twinomuhwezi, Ivan Gumula, Isaac Odokonyero, Ivan Byaruhanga, Patrick Onen

    Background: Zanthoxylum gilletii, an important African medicinal plant, is widely used in traditional medicine for treating various ailments due to its rich phytochemical composition. However, despite its extensive ethnomedicinal applications, the specific bioactive compounds responsible for its antimicrobial properties remain insufficiently characterized. Aims: The study aims to isolate and characterise bioactive compounds from Zanthoxylum gilletii stem bark and evaluate their antimicrobial activity against selected bacterial and fungal pathogens. Methodology: Zanthoxylum gilletii stem bark was collected from Mabira Forest Reserve (0°23′54″N 33°0′59″E), Buikwe District, Uganda on 17th June 2022. The experiments were performed at the Department of Chemistry, Kyambogo University, between June 2022 and July 2023. Stem barks were shade dried, powdered, and extracted using Maceration technique with a mixture of methanol and dichloromethane (ratio 1:1) solvent. The extract was subjected to open column chromatography and identified using NMR spectroscopy and compared with literature information. Antimicrobial activity of crude extract and also the isolated compounds were assessed via disk diffusion against five bacterial and two fungal strains. Results: In this study, four known compounds: lupeol (1), stigmasterol (2), α-amyrin cinnamate (3) and α-amyrin acetate (4) were isolated from stem bark extracts of Zanthoxylum gilletii. This is the first-time compound 4 is reported in Zanthoxylum genus. The compounds had antimicrobial activities against Escherichia coli, Staphylococcus aureus, Pseudomonas aeruginosa, Enterobacter cloacae, Candida albicans and Aspergillus fumigatus. The extract and the compounds displayed inhibition against the microorganisms with diameters measuring 3.0±0.0 mm to 19.0±0.0 mm. The minimal inhibitory concentrations (MICs and MFCs) for active strains ranged from 6.25 to 150 mg/mL. Conclusion: The observed activities support the traditional use of this plant in treating various ailments by Ugandan communities.

  • Open Access

    Integrative LC-HR-QTOF-MS and Computational Metabolomics Approaches for Compound Annotation, Chemometric Profiling and In Silico Antibacterial Evaluation of Ugandan Propolis

    by Ivan Kahwa, Christina Seel, Ronnie Tumwesigye, Patrick Onen, Ramona Oehme, Susan Billig, Rapheal Wangalwa, Jonans Tusiimire, Claudia Wiesner, Leonard Kaysser

    Background/Objectives: Propolis is a complex bee product with a composition that varies according to local vegetation, environmental conditions, and bee foraging behaviours. Recently, gas chromatography–mass spectrometry (GC–MS) has been employed in Uganda to analyse its volatile components. This study examined Ugandan propolis non-volatile metabolites to determine chemotypes and identify antibacterial compounds. Methods: Ethanolic extracts were analysed using liquid chromatography–high-resolution quadrupole time-of-flight mass spectrometry (LC-HR-QTOF-MS) in an untargeted MS/MS mode. Data processing was carried out using MZmine, then annotated with Global Natural Products Social Molecular Networking (GNPS) and SIRIUS. Chemometric methods assisted in identifying regional chemical signatures. Metabolites highlighted by the heatmap were evaluated for antibacterial activity using molecular docking against bacterial targets, followed by ADMET (absorption, distribution, metabolism, excretion, and toxicity) assessments. Results: Out of 3252 features, 234 and 52 putative compounds were annotated in GNPS and SIRIUS, respectively, as indicated by molecular networking, suggesting high chemical complexity. The chemical space mainly comprises flavonoids (including glycosides, aglycones, methylated, and prenylated derivatives), phenolic acids, amides, hydroxycinnamate derivatives, lignans, megastigmanes, and various diterpenoid skeletons. Multivariate analyses clearly distinguish geographical chemotypes, separating flavonoid-rich regions from diterpenoid-rich regions. Docking studies revealed flavonoids, diterpenoids, and lignans with strong predicted antibacterial activities and favourable ADMET profiles. Conclusions: This study provides the first LC–MS characterisation of the non-volatile metabolome of Ugandan propolis, thereby expanding its chemical diversity. Metabolomics and computational approaches lay a foundation for future ecological, chemotaxonomic, and pharmacological research.

  • Open Access

    Bioaccumulation and Transfer of Potentially Toxic Elements in the Yam-Soil System and Associated Health Risks in Kampala’s Luzira Industrial Area

    by Gabson Baguma, Gadson Bamanya, Hannington Twinomuhwezi, Allan Gonzaga, Timothy Omara, Patrick Onen, Simon Ocakacon, Christopher Angiro, Wilber Waibale, Ronald Ntuwa

    Rapid industrialization in peri-urban centers has accelerated the accumulation of potentially toxic elements (PTEs) in agricultural soils, with implications for food safety and public health concerns. This study quantified PTEs (Cu, Cd, Cr, Pb, and Zn) in soils and yam (Colocasia esculenta) tubers from Kampala’s Luzira Industrial Area. Soil contamination levels were evaluated using the geoaccumulation index (Igeo), contamination factor (CF), and pollution load index (PLI), while soil-to-crop transfer of the PTEs was assessed using the biological accumulation factor (BAF). Statistical analyses (One Way Analysis of Variance, Pearson bivariate correlation, and Principal Component Analysis) were applied to identify relationships among PTEs and sampling sites. Soils exhibited marked industrial influence, with PTE concentrations in the order Zn > Pb > Cu > Cr > Cd. The PLI values above unity confirmed cumulative pollution, with hotspots dominated by Zn, Pb, and Cu. Yam tubers contained lower PTE concentrations but reflected a similar contamination pattern as in the soils. The BAF values were −4 to 5.83 × 10−4, well above the US EPA limit. For adults, the TCR also surpassed 1 × 10−4 at sampling points SP3 and SP4. These results found potential transfer of the PTEs from soils into yam tubers, with Cd and Cr being the key drivers of dietary risk.


  • Open Access

    Ecological and Human Health Risks from Potentially Toxic Elements in Environmental Matrices of Kiteezi Landfill, Uganda

    by Emmanuel Ebbu, Irene Nalumansi, Ivan Kiganda, Caroline Kiwanuka Nakiguli, Patrick Onen, Simon Ocakacon, Christopher Adaku, Timothy Omara, Emmanuel Ntambi

    By the time of this study, Kiteezi landfill was Uganda’s largest waste disposal site and received substantial volumes of municipal solid waste. In the present study, water (n = 36), leachates (n = 36), superficial sediments (n = 30), and Colocasia esculenta corms (n = 6) were sampled from Kiteezi landfill in the dry and wet seasons of 2022 before its tragic collapse in 2024. The physicochemical parameters (pH, electrical conductivity, temperature, and oxidation–reduction potential) and concentration of potentially toxic elements (As, Cu, Cr, Pb, and Zn) were analyzed using standard methods and inductively coupled plasma-optical emission spectrometry, respectively. Significant seasonal variations (p < 0.05) were observed for all the physicochemical parameters of water and leachates except temperature. Further, significantly higher concentrations (p < 0.05) of potentially toxic elements (PTXEs) were quantified in environmental matrices sampled during the dry season than the wet season. Arsenic and Pb concentrations in water surpassed their WHO permissible limit of 0.01 mg/L. The concentrations of PTXEs were higher in downstream samples (p < 0.05), indicating that landfill activities led to their enrichment in matrices near the facility. Ecological and pollution risk indices indicated that there is severe enrichment of Cu and Zn in the sediments, with dry season downstream samples having contamination factors and geoaccumulation indices of 539.3 and 74.7 and 8.5 and 5.6, respectively. Although ingestion of water may not cause probable health risks, consumption of Colocasia esculenta corms could lead to non-carcinogenic and cancer health risks in both children and adults (hazard indices = 0.085–189.0 and total cancer risk values of 7.33 × 10−6–4.87 × 10−3). These results emphasize the need that any new replacement for Kiteezi landfill should be properly planned and managed to mitigate potential environmental pollution with xenobiotics.


  • Open Access

    Exposure and Health Risks Posed by Potentially Toxic Elements in Soils of Metal Fabrication Workshops in Mbarara City, Uganda

    by Eunice Nuwamanya, Denis Byamugisha, Caroline K. Nakiguli, Christopher Angiro, Alice V. Khanakwa, Timothy Omara, Simon Ocakacon, Patrick Onen, Daniel Omoding, Boniface Opio, et al.

    Metal fabrication workshops (MFWs) are common businesses in Ugandan cities, and especially those producing metallic security gates, window and door frames (burglar-proof), and balcony and staircase rails. The objective of this study was to comparatively assess the pollution levels and potential health risks of manganese (Mn), chromium (Cr), cadmium (Cd), lead (Pd) and nickel (Ni) in pooled surface soil samples from four 5-, 7-, 8-, and 10-year-old MFWs (n = 28) and a control site (n = 8) in Mbarara City, Uganda. The concentration of the potentially toxic elements (PTEs) was determined using inductively coupled plasma–optical emission spectrometry. Contamination, ecological, and human health risk assessment indices and models were used to identify any risks that the PTEs could pose to the pristine environment and humans. Our results showed that PTE pollution of soils is occuring in the MFWs than at the control site. The mean concentrations of the PTEs (mg kg−1) in the samples were: Mn (2012.75 ± 0.23–3377.14 ± 0.31), Cr (237.55 ± 0.29–424.93 ± 0.31), Cd (0.73 ± 0.13–1.29 ± 0.02), Pb (107.80 ± 0.23–262.01 ± 0.19), and Ni (74.85 ± 0.25–211.37 ± 0.14). These results indicate that the PTEs could plausibly derive from the fabrication activities in these workshops, which is supported by the high values of contamination factors, index of geoaccumulation, and the overall increase in pollution load indices with the number of years of operation of the MFWs. Human health risk assessment showed that there are non-carcinogenic health risks that could be experienced by children who ingest PTEs in the soils from the 7-, 8- and 10-year-old MFWs. The incremental life cancer risk assessment suggested that there are potential cancerous health effects of Cd and Ni that could be experienced in children (who ingest soils from all the four MFWs) and adults (ingesting soils from the 8- and 10-year-old MFWs). This study underscores the need to implement regulatory guidelines on the operation and location of MFWs in Uganda. Further research should be undertaken to investigate the emission of the PTEs during welding operations in the MFWs.


  • Open Access

    A Systematic Review of Contaminants of Concern in Uganda: Occurrence, Sources, Potential Risks, and Removal Strategies

    by Gabson Baguma, Gadson Bamanya, Allan Gonzaga, Wycliffe Ampaire, Patrick Onen

    Contaminants of concern (CoCs) pose significant threats to Uganda’s ecosystems and public health, particularly in the face of rapid urbanization, industrial expansion, and intensified agriculture. This systematic review comprehensively analyzed Uganda’s CoC landscape, addressing imminent challenges that endanger the country’s ecosystems and public health. CoCs, originating from urban, industrial, and agricultural activities, encompass a wide range of substances, including pharmaceuticals, personal care products, pesticides, industrial chemicals, heavy metals, radionuclides, biotoxins, disinfection byproducts, hydrocarbons, and microplastics. This review identified the major drivers of CoC dispersion, particularly wastewater and improper waste disposal practices. From an initial pool of 887 articles collected from reputable databases such as PubMed, African Journal Online (AJOL), Web of Science, Science Direct, and Google Scholar, 177 pertinent studies were extracted. The literature review pointed to the presence of 57 pharmaceutical residues and personal care products, along with 38 pesticide residues and 12 heavy metals, across various environmental matrices, such as wastewater, groundwater, seawater, rainwater, surface water, drinking water, and pharmaceutical effluents. CoC concentrations displayed significant levels exceeding established regulations, varying based on the specific locations, compounds, and matrices. This review underscores potential ecological and health consequences associated with CoCs, including antibiotic resistance, endocrine disruption, and carcinogenicity. Inefficiencies in traditional wastewater treatment methods, coupled with inadequate sanitation practices in certain areas, exacerbate the contamination of Uganda’s aquatic environments, intensifying environmental and health concerns. To address these challenges, advanced oxidation processes (AOPs) emerge as promising and efficient alternatives for CoC degradation and the prevention of environmental pollution. Notably, no prior studies have explored the management and mitigation of these contaminants through AOP application within various aqueous matrices in Uganda. This review emphasizes the necessity of specific regulations, improved data collection, and public awareness campaigns, offering recommendations for advanced wastewater treatment implementation, the adoption of sustainable agricultural practices, and the enforcement of source control measures. Furthermore, it highlights the significance of further research to bridge knowledge gaps and devise effective policies and interventions. Ultimately, this comprehensive analysis equips readers, policymakers, and regulators with vital knowledge for informed decision-making, policy development, and the protection of public health and the environment.


  • Open Access

    Health Risks from Intake and Contact with Toxic Metal-Contaminated Water from Pager River, Uganda

    by Patrick Onen, Robin Akemkwene, Caroline K. Nakiguli, Daniel Nimusiima, Daniel Hendry Ruma, Alice V. Khanakwa, Christopher Angiro, Gadson Bamanya, Boniface Opio, Allan Gonzaga, et al.

    Pollution of water resources is one of the major impediments to the realization of Sustainable Development Goals, especially in developing countries. The aim of this study was to investigate the physicochemical quality and potentially toxic element (lead and cadmium) concentrations in surface water sampled from Pager River, a tributary of the Nile River in Northern Uganda. Water samples (n = 18) were taken from six different points upstream (A, B, and C) and downstream (D, E, and F) of the river and analyzed following standard methods for their physiochemical properties. Atomic absorption spectroscopy was used to quantify lead and cadmium concentrations. Human health risks from ingestion and dermal contact with potentially toxic metal-contaminated water were calculated. The results obtained indicated that the mean temperature (27.7 ± 0.5–29.5 ± 0.8 °C), turbidity (40.7 ± 2.1–50.1 ± 1.1 NTU), lead (0.296 ± 0.030–0.576 ± 0.163 mg/L) and cadmium (0.278 ± 0.040–0.524 ± 0.040 mg/L) occurred at levels that surpassed their permissible limits as per World Health Organization guidelines for drinking water. Human health risk assessment showed that there are potential non-cancer risks from the ingestion of water from Pager River by adults, as the total hazard quotients were greater than one. These results emphasize the urgency to restrict the dumping of wastes into the river to minimize chances of impacting the Nile River, which flows northwards to the Mediterranean Sea. Further studies should perform routine monitoring of the river during both dry and wet seasons to establish the spatiotemporal variations of physicochemical, microbial, and trace metal profiles of the river and the associated health risks.


  • Open Access

    Emerging Pollutants in Uganda: A Systematic Review

    by Gabson Baguma, Gadson Bamanya, Allan Gonzaga, Patrick Onen, Wycliffe Ampaire

    Emerging pollutants pose significant threats to Uganda's ecosystems and public health amidst rapid urbanization, industrial growth, and intensified agriculture. This systematic review comprehensively assessed these pollutants by analyzing existing Ugandan literature and research studies, revealing various types in different environmental compartments. These pollutants, including pharmaceuticals, personal care products, pesticides, industrial chemicals, heavy metals, radionuclides, biotoxins, disinfection byproducts, hydrocarbons, and microplastics, originate from urban, industrial, and agricultural regions. Wastewater and improper waste disposal are major contributors. From an initial search of 794 articles across multiple databases such as PubMed, African Journal Online (AJOL), Web of Science, Science Direct, and Google Scholar, 138 were found relevant. The review underscores potential ecological and health impacts, including antibiotic resistance, endocrine disruption, and carcinogenicity. Existing monitoring and regulation efforts are discussed, alongside the need for specific regulations, improved data collection, and public awareness campaigns. Recommendations include advanced wastewater treatment, sustainable agriculture, and source control measures. Emphasis is placed on further research to address knowledge gaps and develop effective policies and interventions. Uganda can mitigate these risks by implementing comprehensive monitoring, robust regulations, and sustainable practices, safeguarding the environment and public health.

  • Open Access

    Production and Physiochemical Characterization of Biodiesel from Nile cabbage grown in Pager River, Kitgum Municipality, Northern-Uganda

    by Patrick Onen, Eric Niringiyimana, Isaac Odokonyero, Joel Kissa, Ivan Byaruhanga, Wycliffe Ampaire, Temilola Basirat Jogunomi, Adolf Denish Ogenrwot

    Nile cabbage (Pistia stratiotes) represents a promising source of biodiesel which has been garnered due to good biomass yield. This study aims to determine the possibility for biodiesel production from Nile cabbage plants collected from a seasonal Pager River. The bio-oil extraction from Nile cabbage leaves was done using soxhlet apparatus. The biodiesel was produced by transesterification of lipids and characterized by GC-FID and the physio-chemical parameters of the produced biodiesel were also performed. The obtained results indicate that, Nile cabbage sample showed a yield of biodiesel (30.30±0.01) %. The biodiesel obtained possess the following fuel properties: density (880.00±0.00)Kg/m3, pH (5.70±0.00), saponification value (137.10±0.09) mg KOH/g, acid value (1.00±0.00) mg KOH/g, iodine value (63.41±0.01) mg I2/100g, flash point (120±0.00)℃, pour point (-6.20±0.03) ℃, colour (brown), moisture content (50.00±0.00)%, and ash content (0.003±0.00)%, and cetane number (49.53±0.05). The GC-FID analysis of the obtained biodiesel showed the presence of C16:0, C18:0, C18:1 and C18:2 as the major constituents of fatty acids (FAs) detected. Therefore, all physiochemical parameters were within the allowable limits, accept only acid value which was slightly higher than the standard limits issued by the American and European (ASTM D 6571:12 and EN 14214:2012) standards. Aquatic weeds are considered a global threat in the aquatic ecosystem, which invoked a lot of attention from the general public and the scientific community. Our findings showed that Nile cabbage biomass could give a significant yield of biodiesel, with desired fuel properties which will initiates a cleaner energy.