Rajprasad Loganathan
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Previous Organizations / Institutes
The organizations / institutes from the scholar's other articles in the past ten years
Research Subjects
Rajprasad Loganathan has a total of 64 co-authors. Here are the top co-authors by number of shared publications:
- Irina V. Smirnova
Department of Physical Therapy, Rehabilitation Science, and Athletic Training, University of Kansas Medical Center, Kansas City, USA
7 shared publications - Deborah J. Andrew
Department of Cell Biology, The Johns Hopkins University School of Medicine
5 shared publications Matthew Slattery
Department of Biomedical Sciences, University of Minnesota Medical School, Duluth, MN 2
4 shared publicationsMichael B. Wells
Department of Cell Biology, Johns Hopkins University, Baltimore, MD 1
4 shared publications- Brenda J. Rongish
Department of Anatomy and Cell Biology, University of Kansas Medical Center, Kansas City, KS 66160, USA
3 shared publications - Lisa Stehno-Bittel
University of Kansas Medical Center
3 shared publications
Latest Publications
- Open Access
- 23 February 2022
- Published by Rockefeller University Press in Journal of Cell Biology
- Vol. 221 (4)
Ribbon boosts ribosomal protein gene expression to coordinate organ form and function
Cell growth is well defined for late (postembryonic) stages of development, but evidence for early (embryonic) cell growth during postmitotic morphogenesis is limited. Here, we report early cell growth as a key characteristic of tubulogenesis in the Drosophila embryonic salivary gland (SG) and trachea. A BTB/POZ domain nuclear factor, Ribbon (Rib), mediates this early cell growth. Rib binds the transcription start site of nearly every SG-expressed ribosomal protein gene (RPG) and is required for full expression of all RPGs tested. Rib binding to RPG promoters in vitro is weak and not sequence specific, suggesting that specificity is achieved through cofactor interactions. Accordingly, we demonstrate Rib’s ability to physically interact with each of the three known regulators of RPG transcription. Surprisingly, Rib-dependent early cell growth in another tubular organ, the embryonic trachea, is not mediated by direct RPG transcription. These findings support a model of early cell growth customized by transcriptional regulatory networks to coordinate organ form and function.
- 23 February 2022
- Published by Rockefeller University Press in Journal of Cell Biology
- Vol. 221 (4)
Open AccessRibbon boosts ribosomal protein gene expression to coordinate organ form and function
Cell growth is well defined for late (postembryonic) stages of development, but evidence for early (embryonic) cell growth during postmitotic morphogenesis is limited. Here, we report early cell growth as a key characteristic of tubulogenesis in the Drosophila embryonic salivary gland (SG) and trachea. A BTB/POZ domain nuclear factor, Ribbon (Rib), mediates this early cell growth. Rib binds the transcription start site of nearly every SG-expressed ribosomal protein gene (RPG) and is required for full expression of all RPGs tested. Rib binding to RPG promoters in vitro is weak and not sequence specific, suggesting that specificity is achieved through cofactor interactions. Accordingly, we demonstrate Rib’s ability to physically interact with each of the three known regulators of RPG transcription. Surprisingly, Rib-dependent early cell growth in another tubular organ, the embryonic trachea, is not mediated by direct RPG transcription. These findings support a model of early cell growth customized by transcriptional regulatory networks to coordinate organ form and function.
- Open Access
The Ribb-osome: Ribbon boosts ribosomal protein gene expression to coordinate organ form and function
Cell growth is well defined for the late (post-embryonic) stages of development, but evidence for early (embryonic) cell growth during post-mitotic morphogenesis is quite limited. Here, we identify early cell growth as a key characteristic of tubulogenesis in the Drosophila embryonic salivary gland (SG). A BTB/POZ domain nuclear factor, Ribbon (Rib), mediates this early cell growth. Rib binds the transcription start site of nearly every SG-expressed ribosomal protein gene (RPG) and is required for full expression of all RPGs tested. Rib binding to RPG promoters in vitro is weak and not sequence-specific, suggesting that specificity is achieved through co-factor interactions. Consistent with this hypothesis, we demonstrate Rib’s ability to physically interact with each of the three known contributors to RPG transcription. Surprisingly, Rib-dependent early cell growth in another tubular organ—the embryonic trachea—is not mediated by direct RPG transcription. These findings support a model of early cell growth sustained by transcriptional regulatory networks customized for organ form and function.
Open AccessThe Ribb-osome: Ribbon boosts ribosomal protein gene expression to coordinate organ form and function
Cell growth is well defined for the late (post-embryonic) stages of development, but evidence for early (embryonic) cell growth during post-mitotic morphogenesis is quite limited. Here, we identify early cell growth as a key characteristic of tubulogenesis in the Drosophila embryonic salivary gland (SG). A BTB/POZ domain nuclear factor, Ribbon (Rib), mediates this early cell growth. Rib binds the transcription start site of nearly every SG-expressed ribosomal protein gene (RPG) and is required for full expression of all RPGs tested. Rib binding to RPG promoters in vitro is weak and not sequence-specific, suggesting that specificity is achieved through co-factor interactions. Consistent with this hypothesis, we demonstrate Rib’s ability to physically interact with each of the three known contributors to RPG transcription. Surprisingly, Rib-dependent early cell growth in another tubular organ—the embryonic trachea—is not mediated by direct RPG transcription. These findings support a model of early cell growth sustained by transcriptional regulatory networks customized for organ form and function.
- Open Access
- 21 August 2020
- Published by Frontiers Media SA in Frontiers in Cell and Developmental Biology
- Vol. 8
Editorial: Extracellular Matrix Dynamics in Biology, Bioengineering, and Pathology
Editorial: Extracellular Matrix Dynamics in Biology, Bioengineering, and Pathology
- 21 August 2020
- Published by Frontiers Media SA in Frontiers in Cell and Developmental Biology
- Vol. 8
Open AccessEditorial: Extracellular Matrix Dynamics in Biology, Bioengineering, and Pathology
Editorial: Extracellular Matrix Dynamics in Biology, Bioengineering, and Pathology
- Open Access
CrebA increases secretory capacity through direct transcriptional regulation of the secretory machinery, a subset of secretory cargo, and other key regulators
Specialization of many cells, including the acinar cells of the salivary glands and pancreas, milk‐producing cells of mammary glands, mucus‐secreting goblet cells, antibody‐producing plasma cells, and cells that generate the dense extracellular matrices of bone and cartilage, requires scaling up both secretory machinery and cell‐type specific secretory cargo. Using tissue‐specific genome‐scale analyses, we determine how increases in secretory capacity are coordinated with increases in secretory load in the Drosophila salivary gland (SG), an ideal model for gaining mechanistic insight into the functional specialization of secretory organs. Our findings show that CrebA, a bZIP transcription factor, directly binds genes encoding the core secretory machinery, including protein components of the signal recognition particle and receptor, ER cargo translocators, Cop I and Cop II vesicles, as well as the structural proteins and enzymes of these organelles. CrebA directly binds a subset of SG cargo genes and CrebA binds and boosts expression of Sage, a SG‐specific transcription factor essential for cargo expression. To further enhance secretory output, CrebA binds and activates Xbp1 and Tudor‐SN. Thus, CrebA directly upregulates the machinery of secretion and additional factors to increase overall secretory capacity in professional secretory cells; concomitant increases in cargo are achieved both directly and indirectly.
Open AccessCrebA increases secretory capacity through direct transcriptional regulation of the secretory machinery, a subset of secretory cargo, and other key regulators
Specialization of many cells, including the acinar cells of the salivary glands and pancreas, milk‐producing cells of mammary glands, mucus‐secreting goblet cells, antibody‐producing plasma cells, and cells that generate the dense extracellular matrices of bone and cartilage, requires scaling up both secretory machinery and cell‐type specific secretory cargo. Using tissue‐specific genome‐scale analyses, we determine how increases in secretory capacity are coordinated with increases in secretory load in the Drosophila salivary gland (SG), an ideal model for gaining mechanistic insight into the functional specialization of secretory organs. Our findings show that CrebA, a bZIP transcription factor, directly binds genes encoding the core secretory machinery, including protein components of the signal recognition particle and receptor, ER cargo translocators, Cop I and Cop II vesicles, as well as the structural proteins and enzymes of these organelles. CrebA directly binds a subset of SG cargo genes and CrebA binds and boosts expression of Sage, a SG‐specific transcription factor essential for cargo expression. To further enhance secretory output, CrebA binds and activates Xbp1 and Tudor‐SN. Thus, CrebA directly upregulates the machinery of secretion and additional factors to increase overall secretory capacity in professional secretory cells; concomitant increases in cargo are achieved both directly and indirectly.
- Open Access
- 2 April 2020
- Published by Elsevier in Cellular Signalling
- Vol. 72, 109619
Extracellular matrix dynamics in tubulogenesis
- 2 April 2020
- Published by Elsevier in Cellular Signalling
- Vol. 72, 109619
Open AccessExtracellular matrix dynamics in tubulogenesis
- 27 August 2016
- Published by Springer Nature
- p. 151-211
Organogenesis of the Drosophila Respiratory System
- 27 August 2016
- Published by Springer Nature
- p. 151-211
Organogenesis of the Drosophila Respiratory System
- Open Access
- 15 June 2016
- Published by The Company of Biologists in Development
- Vol. 143 (12) , 2056-2065
Extracellular matrix motion and early morphogenesis
For over a century, embryologists who studied cellular motion in early amniotes generally assumed that morphogenetic movement reflected migration relative to a static extracellular matrix (ECM) scaffold. However, as we discuss in this Review, recent investigations reveal that the ECM is also moving during morphogenesis. Time-lapse studies show how convective tissue displacement patterns, as visualized by ECM markers, contribute to morphogenesis and organogenesis. Computational image analysis distinguishes between cell-autonomous (active) displacements and convection caused by large-scale (composite) tissue movements. Modern quantification of large-scale ‘total’ cellular motion and the accompanying ECM motion in the embryo demonstrates that a dynamic ECM is required for generation of the emergent motion patterns that drive amniote morphogenesis.
- 15 June 2016
- Published by The Company of Biologists in Development
- Vol. 143 (12) , 2056-2065
Open AccessExtracellular matrix motion and early morphogenesis
For over a century, embryologists who studied cellular motion in early amniotes generally assumed that morphogenetic movement reflected migration relative to a static extracellular matrix (ECM) scaffold. However, as we discuss in this Review, recent investigations reveal that the ECM is also moving during morphogenesis. Time-lapse studies show how convective tissue displacement patterns, as visualized by ECM markers, contribute to morphogenesis and organogenesis. Computational image analysis distinguishes between cell-autonomous (active) displacements and convection caused by large-scale (composite) tissue movements. Modern quantification of large-scale ‘total’ cellular motion and the accompanying ECM motion in the embryo demonstrates that a dynamic ECM is required for generation of the emergent motion patterns that drive amniote morphogenesis.
- 1 January 2016
- Published by Elsevier in Developmental Biology
- Vol. 409 (1) , 234-250
Ribbon regulates morphogenesis of the Drosophila embryonic salivary gland through transcriptional activation and repression
- 1 January 2016
- Published by Elsevier in Developmental Biology
- Vol. 409 (1) , 234-250
Ribbon regulates morphogenesis of the Drosophila embryonic salivary gland through transcriptional activation and repression
- 2 October 2014
- Published by Taylor & Francis in Organogenesis
- Vol. 10 (4) , 350-364
Identification of emergent motion compartments in the amniote embryo
The tissue scale deformations (³1mm) required to form an amniote embryo are poorly understood. Here, we studied ~400µm-sized explant units from gastrulating quail embryos. The explants deformed in a reproducible manner when grown using a novel vitelline membrane-based culture method. Time-lapse recordings of latent embryonic motion patterns were analyzed after disk-shaped tissue explants were excised from three specific regions near the primitive streak: 1) anterolateral epiblast, 2) posterolateral epiblast, and 3) the avian organizer (Hensen's node). The explants were cultured for 8 hours - an interval equivalent to gastrulation. Both the anterolateral and the posterolateral epiblastic explants engaged in concentric radial/centrifugal tissue expansion. In sharp contrast, Hensen's node explants displayed Cartesian-like, elongated, bipolar deformations - a pattern reminiscent of axis elongation. Time-lapse analysis of explant tissue motion patterns indicated that both cellular motility and extracellular ma...
- 2 October 2014
- Published by Taylor & Francis in Organogenesis
- Vol. 10 (4) , 350-364
Identification of emergent motion compartments in the amniote embryo
The tissue scale deformations (³1mm) required to form an amniote embryo are poorly understood. Here, we studied ~400µm-sized explant units from gastrulating quail embryos. The explants deformed in a reproducible manner when grown using a novel vitelline membrane-based culture method. Time-lapse recordings of latent embryonic motion patterns were analyzed after disk-shaped tissue explants were excised from three specific regions near the primitive streak: 1) anterolateral epiblast, 2) posterolateral epiblast, and 3) the avian organizer (Hensen's node). The explants were cultured for 8 hours - an interval equivalent to gastrulation. Both the anterolateral and the posterolateral epiblastic explants engaged in concentric radial/centrifugal tissue expansion. In sharp contrast, Hensen's node explants displayed Cartesian-like, elongated, bipolar deformations - a pattern reminiscent of axis elongation. Time-lapse analysis of explant tissue motion patterns indicated that both cellular motility and extracellular ma...
- 20 May 2014
- Published by Postdoc Journal in Postdoc Journal
- Vol. 2 (5)
Cell Elongation by the Cytokinetic Machinery - Pinching without Dividing
- 20 May 2014
- Published by Postdoc Journal in Postdoc Journal
- Vol. 2 (5)
Cell Elongation by the Cytokinetic Machinery - Pinching without Dividing