Moshira S. Ghaleb
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Research Subjects
Moshira S. Ghaleb has a total of 5 co-authors. Here are the top co-authors by number of shared publications:
- Hala Moushier Ebbied
Faculty of Computer and Information Sciences, Ain Shams University, Cairo, Egypt
9 shared publications - Mohamed Fahmy Tolba
Faculty of Computer and Information Sciences, Ain Shams University, Cairo, Egypt
9 shared publications - Maryam Nabil Al‐Berry
Department of Scientific Computing, Faculty of Computer and Information Sciences, Ain Shams University, Cairo, Egypt
4 shared publications - Howida AbdelFattah Shedeed
Department of Scientific Computing, Faculty of Computer and Information Sciences, Ain Shams University, Cairo, Egypt
2 shared publications Howaida Shedeed
FCIS Ain shams univ
1 shared publication
Latest Publications
- Open Access
- 5 January 2026
- Published by Elsevier in Journal of Genetic Engineering and Biotechnology
- Vol. 24 (1) , 100639
AI based multiomics integration for cancer diagnosis and prognosis
- 5 January 2026
- Published by Elsevier in Journal of Genetic Engineering and Biotechnology
- Vol. 24 (1) , 100639
Open AccessAI based multiomics integration for cancer diagnosis and prognosis
- Open Access
- 17 December 2025
- Published by Springer Nature in BMC Medical Research Methodology
- Vol. 26 (1)
A novel statistical feature selection framework for biomarker discovery and cancer classification via multiomics integration
Background: Early cancer diagnosis is essential for improving prognosis and guiding treatment. However, the high dimensionality and complexity of omics data present major challenges. Computational approaches that extract stable biomarkers and enable reliable classification across cancer types and stages are needed. Methods: A novel feature selection method, sDCFE (synergistic Discriminative Cluster-based Feature Extraction), was developed by extending Fisher-like variance analysis with a median absolute deviation (MAD) regularization term and a cluster separation component to enhance robustness and interpretability. Features selected by sDCFE were compared with those obtained from XGBoost, and the intersected set of 82 genes was evaluated through functional enrichment (KEGG, Reactome, GO BP), survival analysis (Kaplan–Meier, Cox regression), and biomarker novelty assessment against six external resources. Hybrid classification models integrating XGBoost, sDCFE, and deep learning were applied to pancancer classification, and the framework was further extended to lung squamous cell carcinoma (LUSC) staging using RNA-seq and methylation data. Results: The overlap between sDCFE and XGBoost yielded 82 candidate biomarkers enriched in cancer-related pathways, including cell cycle regulation, immune signalling, and DNA repair. Novelty assessment stratified these genes into established, emerging, and novel categories. Six genes—HFE2, LOC339674, SERINC2, SFTA3, SOX2OT, and ACPP—emerged as the most promising candidates, supported by enrichment and survival associations across multiple cancers. The hybrid model achieved near-perfect pancancer classification on TCGA (accuracy = 99.3%, MCC = 0.992, AUC = 1.0) and demonstrated strong generalizability on PCAWG (accuracy = 94%, MCC = 0.929, AUC = 0.997). In the LUSC staging task, multiomics integration improved classification performance: the CNN-based model reached 84% accuracy, while logistic regression applied to sDCFE-ranked features achieved 88.5% accuracy with superior calibration, highlighting the robustness of the selected features. Conclusion: sDCFE provides a principled extension of Fisher-like methods, enabling stable and interpretable biomarker selection. When combined with XGBoost and deep learning, the framework achieves highly accurate and biologically grounded cancer classification across both cancer types and stages. The identification of novel and prognostic biomarkers, including HFE2, LOC339674, SERINC2, SFTA3, SOX2OT, and ACPP, underscores its translational potential. These results position the framework as a promising precision oncology tool to support early diagnosis, risk stratification, and treatment decision-making.
- 17 December 2025
- Published by Springer Nature in BMC Medical Research Methodology
- Vol. 26 (1)
Open AccessA novel statistical feature selection framework for biomarker discovery and cancer classification via multiomics integration
Background: Early cancer diagnosis is essential for improving prognosis and guiding treatment. However, the high dimensionality and complexity of omics data present major challenges. Computational approaches that extract stable biomarkers and enable reliable classification across cancer types and stages are needed. Methods: A novel feature selection method, sDCFE (synergistic Discriminative Cluster-based Feature Extraction), was developed by extending Fisher-like variance analysis with a median absolute deviation (MAD) regularization term and a cluster separation component to enhance robustness and interpretability. Features selected by sDCFE were compared with those obtained from XGBoost, and the intersected set of 82 genes was evaluated through functional enrichment (KEGG, Reactome, GO BP), survival analysis (Kaplan–Meier, Cox regression), and biomarker novelty assessment against six external resources. Hybrid classification models integrating XGBoost, sDCFE, and deep learning were applied to pancancer classification, and the framework was further extended to lung squamous cell carcinoma (LUSC) staging using RNA-seq and methylation data. Results: The overlap between sDCFE and XGBoost yielded 82 candidate biomarkers enriched in cancer-related pathways, including cell cycle regulation, immune signalling, and DNA repair. Novelty assessment stratified these genes into established, emerging, and novel categories. Six genes—HFE2, LOC339674, SERINC2, SFTA3, SOX2OT, and ACPP—emerged as the most promising candidates, supported by enrichment and survival associations across multiple cancers. The hybrid model achieved near-perfect pancancer classification on TCGA (accuracy = 99.3%, MCC = 0.992, AUC = 1.0) and demonstrated strong generalizability on PCAWG (accuracy = 94%, MCC = 0.929, AUC = 0.997). In the LUSC staging task, multiomics integration improved classification performance: the CNN-based model reached 84% accuracy, while logistic regression applied to sDCFE-ranked features achieved 88.5% accuracy with superior calibration, highlighting the robustness of the selected features. Conclusion: sDCFE provides a principled extension of Fisher-like methods, enabling stable and interpretable biomarker selection. When combined with XGBoost and deep learning, the framework achieves highly accurate and biologically grounded cancer classification across both cancer types and stages. The identification of novel and prognostic biomarkers, including HFE2, LOC339674, SERINC2, SFTA3, SOX2OT, and ACPP, underscores its translational potential. These results position the framework as a promising precision oncology tool to support early diagnosis, risk stratification, and treatment decision-making.
- 13 October 2024
- Published by Springer Nature
- p. 42-52
Lung Cancer Stages Classification Based on Differential Gene Expression and Deep Learning
- 13 October 2024
- Published by Springer Nature
- p. 42-52
Lung Cancer Stages Classification Based on Differential Gene Expression and Deep Learning
- 1 January 2024
- Published by Springer Nature
- p. 13-22
Ovarian Cancer Proteome Analysis and Biomarker Discovery Using Machine Learning
- 1 January 2024
- Published by Springer Nature
- p. 13-22
Ovarian Cancer Proteome Analysis and Biomarker Discovery Using Machine Learning
- 18 September 2023
- Published by Springer Nature
- p. 269-283
Bladder Cancer Microarray Analysis and Biomarker Discovery Using Machine Learning
- 18 September 2023
- Published by Springer Nature
- p. 269-283
Bladder Cancer Microarray Analysis and Biomarker Discovery Using Machine Learning
- 1 March 2023
- Published by Springer Nature
- p. 272-281
Lung Cancer Stages Classification Based on Differential Gene Expression
- 1 March 2023
- Published by Springer Nature
- p. 272-281
Lung Cancer Stages Classification Based on Differential Gene Expression
- 18 November 2022
- Published by Springer Nature
- p. 260-270
Content-Based Image Retrieval Using Fused Convolutional Neural Networks
- 18 November 2022
- Published by Springer Nature
- p. 260-270
Content-Based Image Retrieval Using Fused Convolutional Neural Networks
- 6 May 2022
- Published by Egyptian Knowledge Bank in International Journal of Intelligent Computing and Information Sciences
- Vol. 22 (2) , 1-13
Weather Classification using Fusion Of Convolutional Neural Networks and Traditional Classification Methods
— The weather phenomenon is very important in routine lives. The weather prediction, road electronic monitoring, traffic communication, capping inversion (CAP), afforestation, and the adjustment of the environmental issues are important factors to many decisions. Weather images classification may help in decision support systems. There are traditional and intelligent ways that can sufficiently achieve weather image classification. Traditional methods enhance the classification accuracy and the usability of weather phenomena. Researchers approve that machine learning has achieved better accuracies based on deep learning neural networks. This paper compares three different intelligent models by using a weather image dataset. The first model uses a convolution neural network (CNN) to classify five categories of weather images. The second model uses a fusion of convolution neural network and Decision Tree (DT). The third one uses a fusion of CNN and Support Vector Machine (SVM). The three models are applied to the collected dataset from Github and Kaggle. The study has achieved 92%, 93%, and 94% for CNN, CNN+DT, and CNN+SVM respectively. The Proposed methods have achieved high recognition accuracies for weather forecasting.
- 6 May 2022
- Published by Egyptian Knowledge Bank in International Journal of Intelligent Computing and Information Sciences
- Vol. 22 (2) , 1-13
Weather Classification using Fusion Of Convolutional Neural Networks and Traditional Classification Methods
— The weather phenomenon is very important in routine lives. The weather prediction, road electronic monitoring, traffic communication, capping inversion (CAP), afforestation, and the adjustment of the environmental issues are important factors to many decisions. Weather images classification may help in decision support systems. There are traditional and intelligent ways that can sufficiently achieve weather image classification. Traditional methods enhance the classification accuracy and the usability of weather phenomena. Researchers approve that machine learning has achieved better accuracies based on deep learning neural networks. This paper compares three different intelligent models by using a weather image dataset. The first model uses a convolution neural network (CNN) to classify five categories of weather images. The second model uses a fusion of convolution neural network and Decision Tree (DT). The third one uses a fusion of CNN and Support Vector Machine (SVM). The three models are applied to the collected dataset from Github and Kaggle. The study has achieved 92%, 93%, and 94% for CNN, CNN+DT, and CNN+SVM respectively. The Proposed methods have achieved high recognition accuracies for weather forecasting.
- 29 May 2021
- Published by Springer Nature
- p. 3-11
COVID-19 X-rays Model Detection Using Convolution Neural Network
- 29 May 2021
- Published by Springer Nature
- p. 3-11
COVID-19 X-rays Model Detection Using Convolution Neural Network