Gianna Karanasiou

University of Ioannina

*This is an algorithmically generated author record based on publicly available information.

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University of Ioannina

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FORTH Institute of Molecular Biology and Biotechnology

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Gianna Karanasiou has a total of 26 co-authors. Here are the top co-authors by number of shared publications:

Antonios. I. Sakellarios
Department of Mechanical and Aeronautics Engineering, University of Patras, Patras, Greece
3 shared publications
Dimitrios Ioannis Fotiadis
Informatics Department, School of Sciences, University of Western Macedonia, 52100 Kastoria, Greece
3 shared publications
George Rigas
Unit of Medical Technology and Intelligent Information Systems, Department of Materials Science and Engineering, University of Ioannina, GR45110 Ioannina, Greece
3 shared publications
Lampros K. Michalis
University of Ioannina Department of Cardiology Ioannina
3 shared publications
Savvas Kyriakidis
Department of Biomedical Research, Institute of Molecular Biology and Biotechnology—FORTH, University Campus of Ioannina, GR45110 Ioannina, Greece
3 shared publications
Georgia Karanasiou
Unit of Medical Technology and Intelligent Information Systems, University of Ioannina, 45110 Ioannina, Greece
2 shared publications

Latest Publications

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Open Access
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Cited by 6
- 19 March 2023
- Published by MDPI AG in Journal of Cardiovascular Development and Disease
An All-in-One Tool for 2D Atherosclerotic Disease Assessment and 3D Coronary Artery Reconstruction
by Savvas Kyriakidis, George Rigas, Vassiliki Kigka, Dimitris Zaridis, Georgia Karanasiou, Panagiota Tsompou, Gianna Karanasiou, Lampros Lakkas, Sotirios Nikopoulos, Katerina K. Naka, et al.
Diagnosis of coronary artery disease is mainly based on invasive imaging modalities such as X-ray angiography, intravascular ultrasound (IVUS) and optical coherence tomography (OCT). Computed tomography coronary angiography (CTCA) is also used as a non-invasive imaging alternative. In this work, we present a novel and unique tool for 3D coronary artery reconstruction and plaque characterization using the abovementioned imaging modalities or their combination. In particular, image processing and deep learning algorithms were employed and validated for the lumen and adventitia borders and plaque characterization at the IVUS and OCT frames. Strut detection is also achieved from the OCT images. Quantitative analysis of the X-ray angiography enables the 3D reconstruction of the lumen geometry and arterial centerline extraction. The fusion of the generated centerline with the results of the OCT or IVUS analysis enables hybrid coronary artery 3D reconstruction, including the plaques and the stent geometry. CTCA image processing using a 3D level set approach allows the reconstruction of the coronary arterial tree, the calcified and non-calcified plaques as well as the detection of the stent location. The modules of the tool were evaluated for efficiency with over 90% agreement of the 3D models with the manual annotations, while a usability assessment using external evaluators demonstrated high usability resulting in a mean System Usability Scale (SUS) score equal to 0.89, classifying the tool as “excellent”.
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- 19 March 2023
- Published by MDPI AG in Journal of Cardiovascular Development and Disease
Open Access
An All-in-One Tool for 2D Atherosclerotic Disease Assessment and 3D Coronary Artery Reconstruction
by Savvas Kyriakidis, George Rigas, Vassiliki Kigka, Dimitris Zaridis, Georgia Karanasiou, Panagiota Tsompou, Gianna Karanasiou, Lampros Lakkas, Sotirios Nikopoulos, Katerina K. Naka, et al.
Diagnosis of coronary artery disease is mainly based on invasive imaging modalities such as X-ray angiography, intravascular ultrasound (IVUS) and optical coherence tomography (OCT). Computed tomography coronary angiography (CTCA) is also used as a non-invasive imaging alternative. In this work, we present a novel and unique tool for 3D coronary artery reconstruction and plaque characterization using the abovementioned imaging modalities or their combination. In particular, image processing and deep learning algorithms were employed and validated for the lumen and adventitia borders and plaque characterization at the IVUS and OCT frames. Strut detection is also achieved from the OCT images. Quantitative analysis of the X-ray angiography enables the 3D reconstruction of the lumen geometry and arterial centerline extraction. The fusion of the generated centerline with the results of the OCT or IVUS analysis enables hybrid coronary artery 3D reconstruction, including the plaques and the stent geometry. CTCA image processing using a 3D level set approach allows the reconstruction of the coronary arterial tree, the calcified and non-calcified plaques as well as the detection of the stent location. The modules of the tool were evaluated for efficiency with over 90% agreement of the 3D models with the manual annotations, while a usability assessment using external evaluators demonstrated high usability resulting in a mean System Usability Scale (SUS) score equal to 0.89, classifying the tool as “excellent”.
Cited by 6
Open Access
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Cited by 4
- 22 August 2021
- Published by MDPI AG in Diagnostics
IVUS Longitudinal and Axial Registration for Atherosclerosis Progression Evaluation
by Nikos Tsiknakis, Constantinos Spanakis, Panagiota Tsompou, Georgia Karanasiou, Gianna Karanasiou, Antonis Sakellarios, George Rigas, Savvas Kyriakidis, Michael Papafaklis, Sotirios Nikopoulos, et al.
Intravascular ultrasound (IVUS) imaging offers accurate cross-sectional vessel information. To this end, registering temporal IVUS pullbacks acquired at two time points can assist the clinicians to accurately assess pathophysiological changes in the vessels, disease progression and the effect of the treatment intervention. In this paper, we present a novel two-stage registration framework for aligning pairs of longitudinal and axial IVUS pullbacks. Initially, we use a Dynamic Time Warping (DTW)-based algorithm to align the pullbacks in a temporal fashion. Subsequently, an intensity-based registration method, that utilizes a variant of the Harmony Search optimizer to register each matched pair of the pullbacks by maximizing their Mutual Information, is applied. The presented method is fully automated and only required two single global image-based measurements, unlike other methods that require extraction of morphology-based features. The data used includes 42 synthetically generated pullback pairs, achieving an alignment error of $0.1853$ frames per pullback, a rotation error $0.93 °$ and a translation error of $0.0161$ mm. In addition, it was also tested on 11 baseline and follow-up, and 10 baseline and post-stent deployment real IVUS pullback pairs from two clinical centres, achieving an alignment error of $4.3 \pm 3.9$ for the longitudinal registration, and a distance and a rotational error of $0.56 \pm 0.323$ mm and $12.4 ° \pm 10.5 °$ , respectively, for the axial registration. Although the performance of the proposed method does not match that of the state-of-the-art, our method relies on computationally lighter steps for its computations, which is crucial in real-time applications. On the other hand, the proposed method performs even or better that the state-of-the-art when considering the axial registration. The results indicate that the proposed method can support clinical decision making and diagnosis based on sequential imaging examinations.
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- 22 August 2021
- Published by MDPI AG in Diagnostics
Open Access
IVUS Longitudinal and Axial Registration for Atherosclerosis Progression Evaluation
by Nikos Tsiknakis, Constantinos Spanakis, Panagiota Tsompou, Georgia Karanasiou, Gianna Karanasiou, Antonis Sakellarios, George Rigas, Savvas Kyriakidis, Michael Papafaklis, Sotirios Nikopoulos, et al.
Intravascular ultrasound (IVUS) imaging offers accurate cross-sectional vessel information. To this end, registering temporal IVUS pullbacks acquired at two time points can assist the clinicians to accurately assess pathophysiological changes in the vessels, disease progression and the effect of the treatment intervention. In this paper, we present a novel two-stage registration framework for aligning pairs of longitudinal and axial IVUS pullbacks. Initially, we use a Dynamic Time Warping (DTW)-based algorithm to align the pullbacks in a temporal fashion. Subsequently, an intensity-based registration method, that utilizes a variant of the Harmony Search optimizer to register each matched pair of the pullbacks by maximizing their Mutual Information, is applied. The presented method is fully automated and only required two single global image-based measurements, unlike other methods that require extraction of morphology-based features. The data used includes 42 synthetically generated pullback pairs, achieving an alignment error of $0.1853$ frames per pullback, a rotation error $0.93 °$ and a translation error of $0.0161$ mm. In addition, it was also tested on 11 baseline and follow-up, and 10 baseline and post-stent deployment real IVUS pullback pairs from two clinical centres, achieving an alignment error of $4.3 \pm 3.9$ for the longitudinal registration, and a distance and a rotational error of $0.56 \pm 0.323$ mm and $12.4 ° \pm 10.5 °$ , respectively, for the axial registration. Although the performance of the proposed method does not match that of the state-of-the-art, our method relies on computationally lighter steps for its computations, which is crucial in real-time applications. On the other hand, the proposed method performs even or better that the state-of-the-art when considering the axial registration. The results indicate that the proposed method can support clinical decision making and diagnosis based on sequential imaging examinations.
Cited by 4
Open Access
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Google Scholar
Cited by 15
- 20 May 2021
- Published by Institute of Electrical and Electronics Engineers (IEEE) in IEEE Open Journal of Engineering in Medicine and Biology
A Novel Approach to Generate a Virtual Population of Human Coronary Arteries for In Silico Clinical Trials of Stent Design
by Dimitrios S. Pleouras, Antonis I. Sakellarios, George Rigas, Georgia S. Karanasiou, Panagiota Tsompou, Gianna Karanasiou, Vassiliki Kigka, Savvas Kyriakidis, Vasileios Pezoulas, George Gois, et al.
Goal: To develop a cardiovascular virtual population using statistical modeling and computational biomechanics. Methods: A clinical data augmentation algorithm is implemented to efficiently generate virtual clinical data using a real clinical dataset. An atherosclerotic plaque growth model is employed to 3D reconstructed coronary arterial segments to generate virtual coronary arterial geometries (geometrical data). Last, the combination of the virtual clinical and geometrical data is achieved using a methodology that allows for the generation of a realistic virtual population which can be used in in silico clinical trials. Results: The results show good agreement between real and virtual clinical data presenting a mean gof 0.1 ± 0.08. 400 virtual coronary arteries were generated, while the final virtual population includes 10,000 patients. Conclusions: The virtual arterial geometries are efficiently matched to the generated clinical data, both increasing and complementing the variability of the virtual population.
Website
Google Scholar
- 20 May 2021
- Published by Institute of Electrical and Electronics Engineers (IEEE) in IEEE Open Journal of Engineering in Medicine and Biology
Open Access
A Novel Approach to Generate a Virtual Population of Human Coronary Arteries for In Silico Clinical Trials of Stent Design
by Dimitrios S. Pleouras, Antonis I. Sakellarios, George Rigas, Georgia S. Karanasiou, Panagiota Tsompou, Gianna Karanasiou, Vassiliki Kigka, Savvas Kyriakidis, Vasileios Pezoulas, George Gois, et al.
Goal: To develop a cardiovascular virtual population using statistical modeling and computational biomechanics. Methods: A clinical data augmentation algorithm is implemented to efficiently generate virtual clinical data using a real clinical dataset. An atherosclerotic plaque growth model is employed to 3D reconstructed coronary arterial segments to generate virtual coronary arterial geometries (geometrical data). Last, the combination of the virtual clinical and geometrical data is achieved using a methodology that allows for the generation of a realistic virtual population which can be used in in silico clinical trials. Results: The results show good agreement between real and virtual clinical data presenting a mean gof 0.1 ± 0.08. 400 virtual coronary arteries were generated, while the final virtual population includes 10,000 patients. Conclusions: The virtual arterial geometries are efficiently matched to the generated clinical data, both increasing and complementing the variability of the virtual population.
Cited by 15