AMAlejandro Mora-Rubio

Alejandro Mora-Rubio

*This is an algorithmically generated author record based on publicly available information.

Current Organizations / Institutes

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Previous Organizations / Institutes

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Alejandro Mora-Rubio has a total of 103 co-authors. Here are the top co-authors by number of shared publications:


Latest Publications

  • Open Access

    Multimodal PET–MR segmentation for glioblastoma: complementarity for treatment planning and recurrence definition

    by Alejandro Mora-Rubio, Dejan Kuhn, Carolina Bravo-Vergara, Tobias Fechter, Melissa Mauer, Maria Beser-Robles, Irene Marín Radoszynski, Rocío Catalán Flores, Johannes Fostitsch, Pablo García Verdú, et al.

  • Extreme cardiac MRI analysis under respiratory motion: Results of the CMRxMotion challenge

    by Kang Wang, Chen Qin, Zhang Shi, Haoran Wang, Xiwen Zhang, Chen Chen, Cheng Ouyang, Chengliang Dai, Yuanhan Mo, Chenchen Dai, et al.


  • Open Access

    Transformers and capsule networks vs classical ML on clinical data for alzheimer classification

    by Mario Alejandro Bravo-Ortíz, Sergio Alejandro Holguin-Garcia, Ernesto Guevara-Navarro, Esteban Cerón-Cabrera, Alejandro Mora-Rubio, Harold Brayan Arteaga-Arteaga, Gonzalo A. Ruz, Reinel Tabares-Soto

    Alzheimer’s disease (AD) is a progressive neurodegenerative disorder and the leading cause of dementia worldwide. Although clinical examinations and neuroimaging are considered the diagnostic gold standard, their high cost, lengthy acquisition times, and limited accessibility underscore the need for alternative approaches. This study presents a rigorous comparative analysis of traditional machine learning (ML) algorithms and advanced deep learning (DL) architectures that that rely solely on structured clinical data, enabling early, scalable AD detection. We propose a novel hybrid model that integrates a convolutional neural networks (CNNs), DigitCapsule-Net, and a Transformer encoder to classify four disease stages—cognitively normal (CN), early mild cognitive impairment (EMCI), late mild cognitive impairment (LMCI), and AD. Feature selection was carried out on the ADNI cohort with the Boruta algorithm, Elastic Net regularization, and information-gain ranking. To address class imbalance, we applied three oversampling techniques: synthetic minority oversampling technique (SMOTE), oversample using adaptive synthetic (ADASYN), and SMOTE-Tomek. In the three-class setting, the CNN + DigitCapsule-Net hybrid attained 90.58% accuracy, outperforming state-of-the-art baselines that rely only on clinical variables. A tuned gradient boosting (GB) model achieved comparable performance with substantially lower computational requirements. Model interpretability was assessed with SHAP and gradient-weighted class activation map (Grad-CAM), which identified Clinical Dementia Rating-Sum of Boxes (CRD-SB), Logical Memory-Delayed Recall Total Number of Story Units Recalled (LDELTOTAL), and Modified Preclinical Alzheimer Cognitive Composite with Trails B (mPACC-TrailsB) as the most informative clinical features. This combination of predictive strength, computational efficiency, and transparent interpretation positions the proposed approach as a promising open-source tool for facilitating early AD diagnosis in clinical settings.


  • A systematic review of vision transformers and convolutional neural networks for Alzheimer’s disease classification using 3D MRI images

    by Mario Alejandro Bravo-Ortiz, Sergio Alejandro Holguin-Garcia, Sebastián Quiñones-Arredondo, Alejandro Mora-Rubio, Ernesto Guevara-Navarro, Harold Brayan Arteaga-Arteaga, Gonzalo A. Ruz, Reinel Tabares-Soto


  • Open Access

    SAM-UNETR: Clinically Significant Prostate Cancer Segmentation Using Transfer Learning From Large Model

    by Jesus Alejandro Alzate-Grisales, Alejandro Mora-Rubio, Francisco García-García, Reinel Tabares-Soto, Maria De La Iglesia-Vayá

    Prostate cancer (PCa) is one of the leading causes of cancer-related mortality among men worldwide. Accurate and efficient segmentation of clinically significant prostate cancer (csPCa) regions from magnetic resonance imaging (MRI) plays a crucial role in diagnosis, treatment planning, and monitoring of the disease, however, this is a challenging task even for the specialized clinicians. This study presents SAM-UNETR, a novel model for segmenting csPCa regions from MRI images. SAM-UNETR combines a transformer-encoder from the Segment Anything Model (SAM), a versatile segmentation model trained on 11 million images, with a residual-convolution decoder inspired by UNETR. The model uses multiple image modalities and applies prostate zone segmentation, normalization, and data augmentation as preprocessing steps. The performance of SAM-UNETR is compared with three other models using the same strategy and preprocessing. The results show that SAM-UNETR achieves superior reliability and accuracy in csPCa segmentation, especially when using transfer learning for the image encoder. This demonstrates the adaptability of large-scale models for different tasks. SAM-UNETR attains a Dice Score of 0.467 and an AUROC of 0.77 for csPCa prediction.


  • Open Access

    Classification of Alzheimer’s disease stages from magnetic resonance images using deep learning

    by Alejandro Mora-Rubio, Mario Alejandro Bravo-Ortíz, Sebastián Quiñones Arredondo, Jose Manuel Saborit Torres, Gonzalo A. Ruz, Reinel Tabares-Soto

    Alzheimer’s disease (AD) is a progressive type of dementia characterized by loss of memory and other cognitive abilities, including speech. Since AD is a progressive disease, detection in the early stages is essential for the appropriate care of the patient throughout its development, going from asymptomatic to a stage known as mild cognitive impairment (MCI), and then progressing to dementia and severe dementia; is worth mentioning that everyone suffers from cognitive impairment to some degree as we age, but the relevant task here is to identify which people are most likely to develop AD. Along with cognitive tests, evaluation of the brain morphology is the primary tool for AD diagnosis, where atrophy and loss of volume of the frontotemporal lobe are common features in patients who suffer from the disease. Regarding medical imaging techniques, magnetic resonance imaging (MRI) scans are one of the methods used by specialists to assess brain morphology. Recently, with the rise of deep learning (DL) and its successful implementation in medical imaging applications, it is of growing interest in the research community to develop computer-aided diagnosis systems that can help physicians to detect this disease, especially in the early stages where macroscopic changes are not so easily identified. This article presents a DL-based approach to classifying MRI scans in the different stages of AD, using a curated set of images from Alzheimer’s Disease Neuroimaging Initiative and Open Access Series of Imaging Studies databases. Our methodology involves image pre-processing using FreeSurfer, spatial data-augmentation operations, such as rotation, flip, and random zoom during training, and state-of-the-art 3D convolutional neural networks such as EfficientNet, DenseNet, and a custom siamese network, as well as the relatively new approach of vision transformer architecture. With this approach, the best detection percentage among all four architectures was around 89% for AD vs. Control, 80% for Late MCI vs. Control, 66% for MCI vs. Control, and 67% for Early MCI vs. Control.


  • Open Access

    COVID-19 detection in X-ray images using convolutional neural networks

    by Daniel Arias-Garzón, Jesús Alejandro Alzate-Grisales, Simon Orozco-Arias, Harold Brayan Arteaga-Arteaga, Mario Alejandro Bravo-Ortiz, Alejandro Mora-Rubio, Jose Manuel Saborit-Torres, Joaquim Ángel Montell Serrano, Maria de la Iglesia Vayá, Oscar Cardona-Morales, et al.


  • Open Access

    Machine learning applications to predict two-phase flow patterns

    by Harold Brayan Arteaga-Arteaga, Alejandro Mora-Rubio, Frank Florez, Nicolas Murcia-Orjuela, Cristhian Eduardo Diaz-Ortega, Simon Orozco-Arias, Melissa Delapava, Mario Alejandro Bravo-Ortíz, Melvin Robinson, Pablo Guillen-Rondon, et al.

    Recent advances in artificial intelligence with traditional machine learning algorithms and deep learning architectures solve complex classification problems. This work presents the performance of different artificial intelligence models to classify two-phase flow patterns, showing the best alternatives for this specific classification problem using two-phase flow regimes (liquid and gas) in pipes. Flow patterns are affected by physical variables such as superficial velocity, viscosity, density, and superficial tension. They also depend on the construction characteristics of the pipe, such as the angle of inclination and the diameter. We selected 12 databases (9,029 samples) to train and test machine learning models, considering these variables that influence the flow patterns. The primary dataset is Shoham (1982), containing 5,675 samples with six different flow patterns. An extensive set of metrics validated the results obtained. The most relevant characteristics for training the models using Shoham (1982) dataset are gas and liquid superficial velocities, angle of inclination, and diameter. Regarding the algorithms, the Extra Trees model classifies the flow patterns with the highest degree of fidelity, achieving an accuracy of 98.8%.


  • Open Access

    Sensitivity of deep learning applied to spatial image steganalysis

    by Reinel Tabares-Soto, Harold Brayan Arteaga-Arteaga, Alejandro Mora-Rubio, Mario Alejandro Bravo-Ortíz, Daniel Arias-Garzón, Jesús Alejandro Alzate-Grisales, Simon Orozco-Arias, Gustavo Isaza, Raúl Ramos-Pollán

    In recent years, the traditional approach to spatial image steganalysis has shifted to deep learning (DL) techniques, which have improved the detection accuracy while combining feature extraction and classification in a single model, usually a convolutional neural network (CNN). The main contribution from researchers in this area is new architectures that further improve detection accuracy. Nevertheless, the preprocessing and partition of the database influence the overall performance of the CNN. This paper presents the results achieved by novel steganalysis networks (Xu-Net, Ye-Net, Yedroudj-Net, SR-Net, Zhu-Net, and GBRAS-Net) using different combinations of image and filter normalization ranges, various database splits, different activation functions for the preprocessing stage, as well as an analysis on the activation maps and how to report accuracy. These results demonstrate how sensible steganalysis systems are to changes in any stage of the process, and how important it is for researchers in this field to register and report their work thoroughly. We also propose a set of recommendations for the design of experiments in steganalysis with DL.