Jirong Zheng
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Research Subjects
Jirong Zheng has a total of 32 co-authors. Here are the top co-authors by number of shared publications:
- Tonglin Wang
Vegetable Research Institute, Hangzhou Academy of Agricultural Sciences, Hangzhou 310024, China
3 shared publications - Zhixing Nie
Vegetable Research Institute, Hangzhou Academy of Agricultural Sciences, Hangzhou 310024, China
3 shared publications - Hong Wang
Vegetable Research Institute, Hangzhou Academy of Agricultural Sciences, Hangzhou 310024, China
2 shared publications - Qiaomei Wang
Key Laboratory of Horticultural Plant Growth, Development and Quality improvement, Ministry of Agriculture, Department of Horticulture, Zhejiang University, Hangzhou 310058, China
2 shared publications - Tonglin Wang
Hangzhou Academy of Agricultural Sciences , 261 Zhusi Road, Xihu District, Hangzhou 310024
2 shared publications - Zhiyong Shao
Vegetable Research Institute, Hangzhou Academy of Agricultural Sciences, Hangzhou 310024, China
2 shared publications
Latest Publications
- Open Access
- 25 October 2026
- Published by MDPI AG in International Journal of Molecular Sciences
- Vol. 27 (21) , 9531
Moderately High Nutrient-Solution Electrical Conductivity Reshapes Stage-Specific Carbon Metabolism Linked to Flavor Formation in Tomato Fruit
Modulating nutrient-solution electrical conductivity (EC) is an important strategy for improving the fruit flavor of tomato (Solanum lycopersicum L.) in soilless culture. Previous salinity studies have typically elevated EC through NaCl supplementation, which is physiologically distinct from raising EC via basal nutrient concentrations. Moreover, whether the quality-improving effect of moderately high electrical conductivity (HEC) arises from passive osmotic concentration or active metabolic reprogramming remains unclear. Tomato cultivar ‘Hangza 602’ was grown under CK (2.0 mS cm−1) and HEC (3.0 mS cm−1). Fruits were sampled at mature-green, breaker, pink and red-ripe stages for integrated transcriptomic, enzymatic and metabolomic analyses. HEC increased total soluble solids across ripening stages and promoted sugar and organic acid accumulation at pink and red-ripe stages, with a greater organic-acid increment reducing the sugar–acid ratio. Sugar transporter genes were induced at the breaker stage. At the pink stage, HEC elevated the activities of phosphofructokinase, citrate synthase and NADP–malate dehydrogenase without altering sucrose-phosphate synthase, indicating enhanced catabolic flux rather than sucrose biosynthesis. Sugars and citric acid accumulated persistently, whereas malic acid rose transiently then declined at red-ripe. Multiple downstream pathways were altered in HEC-treated red-ripe fruits. Collectively, HEC initiates stage-specific carbon-metabolic reprogramming combining osmotic and active effects, providing experimental insights for precision EC management in protected tomato production. Future work will further identify key regulatory genes governing this stage-specific metabolic response and validate the combined effects of EC and other environmental factors to develop robust soilless culture strategies for flavor improvement.
- 25 October 2026
- Published by MDPI AG in International Journal of Molecular Sciences
- Vol. 27 (21) , 9531
Open AccessModerately High Nutrient-Solution Electrical Conductivity Reshapes Stage-Specific Carbon Metabolism Linked to Flavor Formation in Tomato Fruit
Modulating nutrient-solution electrical conductivity (EC) is an important strategy for improving the fruit flavor of tomato (Solanum lycopersicum L.) in soilless culture. Previous salinity studies have typically elevated EC through NaCl supplementation, which is physiologically distinct from raising EC via basal nutrient concentrations. Moreover, whether the quality-improving effect of moderately high electrical conductivity (HEC) arises from passive osmotic concentration or active metabolic reprogramming remains unclear. Tomato cultivar ‘Hangza 602’ was grown under CK (2.0 mS cm−1) and HEC (3.0 mS cm−1). Fruits were sampled at mature-green, breaker, pink and red-ripe stages for integrated transcriptomic, enzymatic and metabolomic analyses. HEC increased total soluble solids across ripening stages and promoted sugar and organic acid accumulation at pink and red-ripe stages, with a greater organic-acid increment reducing the sugar–acid ratio. Sugar transporter genes were induced at the breaker stage. At the pink stage, HEC elevated the activities of phosphofructokinase, citrate synthase and NADP–malate dehydrogenase without altering sucrose-phosphate synthase, indicating enhanced catabolic flux rather than sucrose biosynthesis. Sugars and citric acid accumulated persistently, whereas malic acid rose transiently then declined at red-ripe. Multiple downstream pathways were altered in HEC-treated red-ripe fruits. Collectively, HEC initiates stage-specific carbon-metabolic reprogramming combining osmotic and active effects, providing experimental insights for precision EC management in protected tomato production. Future work will further identify key regulatory genes governing this stage-specific metabolic response and validate the combined effects of EC and other environmental factors to develop robust soilless culture strategies for flavor improvement.
- Open Access
- 22 June 2026
- Published by Springer Nature in BMC Plant Biology
- Vol. 26 (1)
Metabolomic and transcriptomic analyses reveal grafting-regulated nutritional and flavor metabolites in tomato
Grafting is a common agronomic strategy to improve growth, stress tolerance, and fruit quality in tomato. However, the molecular and metabolic mechanisms by which rootstocks regulate tomato fruit nutritional and flavor quality remain largely unclear. In this study, the tomato cultivar HZ504 was used as the scion and grafted onto three rootstocks (JZ, TLBM, JB), with self-grafted HZ504 as the control. Agronomic trait analysis showed that JZ rootstock significantly increased fruit number per plant and total soluble solids content. Integrated transcriptomic and metabolomic analyses revealed that JZ rootstock broadly altered the transcriptome and metabolome of scion fruits. Metabolites such as flavonoids, phenolic acids, terpenoids, and amino acids, all closely linked to flavor and nutrition, were elevated. On the transcriptome side, differentially expressed genes were mainly enriched in photosynthesis, starch and sucrose metabolism, and the phenylpropanoid/flavonoid biosynthesis pathways. At the pink ripening stage, JZ specifically upregulated key flavonoid pathway genes in a ripening-dependent manner, tightly correlating with increased flavonoid accumulation. Together, these results indicate that JZ rootstock enhances tomato yield and quality by reorganizing transcription and metabolic flux, particularly toward flavonoid biosynthesis. This work provides a practical basis for rootstock selection and sustainable production of high-quality tomatoes.
- 22 June 2026
- Published by Springer Nature in BMC Plant Biology
- Vol. 26 (1)
Open AccessMetabolomic and transcriptomic analyses reveal grafting-regulated nutritional and flavor metabolites in tomato
Grafting is a common agronomic strategy to improve growth, stress tolerance, and fruit quality in tomato. However, the molecular and metabolic mechanisms by which rootstocks regulate tomato fruit nutritional and flavor quality remain largely unclear. In this study, the tomato cultivar HZ504 was used as the scion and grafted onto three rootstocks (JZ, TLBM, JB), with self-grafted HZ504 as the control. Agronomic trait analysis showed that JZ rootstock significantly increased fruit number per plant and total soluble solids content. Integrated transcriptomic and metabolomic analyses revealed that JZ rootstock broadly altered the transcriptome and metabolome of scion fruits. Metabolites such as flavonoids, phenolic acids, terpenoids, and amino acids, all closely linked to flavor and nutrition, were elevated. On the transcriptome side, differentially expressed genes were mainly enriched in photosynthesis, starch and sucrose metabolism, and the phenylpropanoid/flavonoid biosynthesis pathways. At the pink ripening stage, JZ specifically upregulated key flavonoid pathway genes in a ripening-dependent manner, tightly correlating with increased flavonoid accumulation. Together, these results indicate that JZ rootstock enhances tomato yield and quality by reorganizing transcription and metabolic flux, particularly toward flavonoid biosynthesis. This work provides a practical basis for rootstock selection and sustainable production of high-quality tomatoes.
- Open Access
- 16 March 2026
- Published by MDPI AG in Microorganisms
- Vol. 14 (3) , 672
Microbial Inoculants Alleviate Continuous Cropping Obstacles in Eggplant Through Soil Properties and Rhizosphere Microbiota
Eggplant cultivation faces major challenges from continuous cropping obstacles, which degrade soil health and limit sustainable production. Microbial inoculants offer a promising strategy for addressing such issues by modifying the soil environment and rhizosphere ecology. In this study, a field experiment was conducted to evaluate the effects of three bacterial inoculants, including Bacillus zhangzhouensis (BF1), Bacillus mobilis (BF2), and Zhihengliuella halotolerans (BF3), on soil properties, microbial community structure, and crop performance in a continuously cropped eggplant system. The results showed that three inoculants exerted strain-specific effects: BF1 significantly promoted eggplant vegetative growth and yield, increasing plant height by 32.1%, stem diameter by 28.7%, and total yield by 142.4% relative to the control; BF3 selectively improved fruit quality and soil nutrient status, elevating eggplant fruit total amino acid, soluble protein, and soluble sugar contents by 68.9%, 52.3%, and 41.2%, respectively, and increasing soil organic carbon (SOC), total nitrogen (TN), and available nitrogen (AN) by 13.73%, 18.03%, and 84.92% compared with the control. BF2 showed limited efficacy relative to the control. All inoculants enhanced the abundance of beneficial bacteria and reshaped the rhizosphere microbial community structure. The findings demonstrate the potential of strain-specific microbial inoculants to alleviate continuous cropping obstacles and promote sustainable eggplant production.
- 16 March 2026
- Published by MDPI AG in Microorganisms
- Vol. 14 (3) , 672
Open AccessMicrobial Inoculants Alleviate Continuous Cropping Obstacles in Eggplant Through Soil Properties and Rhizosphere Microbiota
Eggplant cultivation faces major challenges from continuous cropping obstacles, which degrade soil health and limit sustainable production. Microbial inoculants offer a promising strategy for addressing such issues by modifying the soil environment and rhizosphere ecology. In this study, a field experiment was conducted to evaluate the effects of three bacterial inoculants, including Bacillus zhangzhouensis (BF1), Bacillus mobilis (BF2), and Zhihengliuella halotolerans (BF3), on soil properties, microbial community structure, and crop performance in a continuously cropped eggplant system. The results showed that three inoculants exerted strain-specific effects: BF1 significantly promoted eggplant vegetative growth and yield, increasing plant height by 32.1%, stem diameter by 28.7%, and total yield by 142.4% relative to the control; BF3 selectively improved fruit quality and soil nutrient status, elevating eggplant fruit total amino acid, soluble protein, and soluble sugar contents by 68.9%, 52.3%, and 41.2%, respectively, and increasing soil organic carbon (SOC), total nitrogen (TN), and available nitrogen (AN) by 13.73%, 18.03%, and 84.92% compared with the control. BF2 showed limited efficacy relative to the control. All inoculants enhanced the abundance of beneficial bacteria and reshaped the rhizosphere microbial community structure. The findings demonstrate the potential of strain-specific microbial inoculants to alleviate continuous cropping obstacles and promote sustainable eggplant production.
- Open Access
- 30 April 2025
- Published by Oxford University Press (OUP) in Horticulture Research
- Vol. 12 (8) , uhaf109
Phenotypic dynamics and temporal heritability of tomato architectural traits using an unmanned ground vehicle-based plant phenotyping system
Large-scale manual measurements of plant architectural traits in tomato growth are laborious and subjective, hindering deeper understanding of temporal variations in gene expression heterogeneity. This study develops a high-throughput approach for characterizing tomato architectural traits at different growth stages and mapping temporal broad-sense heritability using an unmanned ground vehicle-based plant phenotyping system. The SegFormer with fusion of multispectral and depth imaging modalities was employed to semantically segment plant organs from the registered RGB-D and multispectral images. Organ point clouds were then generated and clustered into instances. Finally, six key architectural traits, including fruit spacing (FS), inflorescence height (IH), stem thickness (ST), leaf spacing (LS), total leaf area (TLA), and leaf inclination angle (LIA) were extracted and the temporal broad-sense heritability folds were plotted. The root mean square errors (RMSEs) of the estimated FS, IH, ST, and LS were 0.014, 0.043, 0.003, and 0.015 m, respectively. The visualizations of the estimated TLA and LIA matched the actual growth trends. The broad-sense heritability of the extracted traits exhibited different trends across the growth stages: (i) ST, IH, and FS had a gradually increased broad-sense heritability over time, (ii) LS and LIA had a decreasing trend, and (iii) TLA showed fluctuations (i.e. an M-shaped pattern) of the broad-sense heritability throughout the growth period. The developed system and analytical approach are promising tools for accurate and rapid characterization of spatiotemporal changes of tomato plant architecture in controlled environments, laying the foundation for efficient crop breeding and precision production management in the future.
- 30 April 2025
- Published by Oxford University Press (OUP) in Horticulture Research
- Vol. 12 (8) , uhaf109
Open AccessPhenotypic dynamics and temporal heritability of tomato architectural traits using an unmanned ground vehicle-based plant phenotyping system
Large-scale manual measurements of plant architectural traits in tomato growth are laborious and subjective, hindering deeper understanding of temporal variations in gene expression heterogeneity. This study develops a high-throughput approach for characterizing tomato architectural traits at different growth stages and mapping temporal broad-sense heritability using an unmanned ground vehicle-based plant phenotyping system. The SegFormer with fusion of multispectral and depth imaging modalities was employed to semantically segment plant organs from the registered RGB-D and multispectral images. Organ point clouds were then generated and clustered into instances. Finally, six key architectural traits, including fruit spacing (FS), inflorescence height (IH), stem thickness (ST), leaf spacing (LS), total leaf area (TLA), and leaf inclination angle (LIA) were extracted and the temporal broad-sense heritability folds were plotted. The root mean square errors (RMSEs) of the estimated FS, IH, ST, and LS were 0.014, 0.043, 0.003, and 0.015 m, respectively. The visualizations of the estimated TLA and LIA matched the actual growth trends. The broad-sense heritability of the extracted traits exhibited different trends across the growth stages: (i) ST, IH, and FS had a gradually increased broad-sense heritability over time, (ii) LS and LIA had a decreasing trend, and (iii) TLA showed fluctuations (i.e. an M-shaped pattern) of the broad-sense heritability throughout the growth period. The developed system and analytical approach are promising tools for accurate and rapid characterization of spatiotemporal changes of tomato plant architecture in controlled environments, laying the foundation for efficient crop breeding and precision production management in the future.
- Open Access
Comparative Transcriptome Analysis of Eggplant (Solanum melongena L.) Peels with Different Glossiness
Peel glossiness is an important commercial trait of eggplant (Solanum melongena L.). In this study, two eggplant-inbred lines with different levels of peel glossiness were used to identify genes related to peel glossiness. Paraffin section analysis showed that increased wax thickness and wrinkles on the wax surface of eggplant peels decreased glossiness. Differential gene expression related to eggplant peel glossiness was analyzed by comparing the transcriptomes of eggplant peels with different gloss levels and at different developmental stages. The results identified 996 differentially expressed genes (DEGs), including 502 upregulated and 494 downregulated genes, possibly related to eggplant peel glossiness. GO enrichment and KEGG enrichment analyses revealed that the DNA replication pathway (GO:0003688, GO:0006270) and the photosynthesis pathway (map00195) were downregulated and thus may be associated with reduced eggplant peel glossiness. Expression level analysis of eggplant peels with different glossiness levels revealed that a C2H2 transcription factor gene, two ERF transcription factor genes, one long-chain acyl-CoA synthetase gene, and four wax- or cutin-related genes may be associated with the glossiness of eggplant fruit peels. These findings will help guide future genetic improvements in eggplant peel glossiness.
Open AccessComparative Transcriptome Analysis of Eggplant (Solanum melongena L.) Peels with Different Glossiness
Peel glossiness is an important commercial trait of eggplant (Solanum melongena L.). In this study, two eggplant-inbred lines with different levels of peel glossiness were used to identify genes related to peel glossiness. Paraffin section analysis showed that increased wax thickness and wrinkles on the wax surface of eggplant peels decreased glossiness. Differential gene expression related to eggplant peel glossiness was analyzed by comparing the transcriptomes of eggplant peels with different gloss levels and at different developmental stages. The results identified 996 differentially expressed genes (DEGs), including 502 upregulated and 494 downregulated genes, possibly related to eggplant peel glossiness. GO enrichment and KEGG enrichment analyses revealed that the DNA replication pathway (GO:0003688, GO:0006270) and the photosynthesis pathway (map00195) were downregulated and thus may be associated with reduced eggplant peel glossiness. Expression level analysis of eggplant peels with different glossiness levels revealed that a C2H2 transcription factor gene, two ERF transcription factor genes, one long-chain acyl-CoA synthetase gene, and four wax- or cutin-related genes may be associated with the glossiness of eggplant fruit peels. These findings will help guide future genetic improvements in eggplant peel glossiness.
- Open Access
- 22 February 2023
- Published by MDPI AG in Horticulturae
- Vol. 9 (3) , 300
Quality Improvement of Tomato Fruits by Preharvest Application of Chitosan Oligosaccharide
Chitosan oligosaccharide (COS), a degradation product of chitosan, is easily accessible, highly bioactive, non-toxic, and well-soluble in water. The effects of COS on the qualitative attributes of tomato fruits were investigated in the current study. COS was administered to tomato plants (Solanum lycopersicum cv. Ruixinghongniu) by foliar spray and root irrigation in alternate cycles at concentrations of 0.5 g·L−1 and 0.16 g·L−1, respectively. The experimental outcomes revealed that COS treatment promoted the coloring and softening of tomato fruits. Lycopene, vitamin C, fructose, and glucose levels increased by 49.0%, 25.4%, 30.2%, and 33.4%, respectively, in COS-treated ripe fruits compared to controls. The volatile metabolome showed that COS application also increased the release of ten volatiles correlated with consumer preference (1-penten-3-one, (E)-2-pentenal, (E)-3-hexen-1-ol, (E)-2-heptenal, 2-isobutylthiazole, phenylacetaldehyde, 2-phenylethanol, 6-methyl-5-hepten-2-one, 6-methyl-5-hepten-2-ol, and β-ionone), contributing to an improved tomato flavor. Moreover, increased transcript levels of genes participating in ethylene biosynthesis, perception, and response along with enhanced ethylene production were observed in COS-treated fruits, suggesting that COS may regulate tomato fruit quality via the ethylene pathway. Taken together, our results indicated that the pre-harvest application of COS could improve tomato fruit quality attributes.
- 22 February 2023
- Published by MDPI AG in Horticulturae
- Vol. 9 (3) , 300
Open AccessQuality Improvement of Tomato Fruits by Preharvest Application of Chitosan Oligosaccharide
Chitosan oligosaccharide (COS), a degradation product of chitosan, is easily accessible, highly bioactive, non-toxic, and well-soluble in water. The effects of COS on the qualitative attributes of tomato fruits were investigated in the current study. COS was administered to tomato plants (Solanum lycopersicum cv. Ruixinghongniu) by foliar spray and root irrigation in alternate cycles at concentrations of 0.5 g·L−1 and 0.16 g·L−1, respectively. The experimental outcomes revealed that COS treatment promoted the coloring and softening of tomato fruits. Lycopene, vitamin C, fructose, and glucose levels increased by 49.0%, 25.4%, 30.2%, and 33.4%, respectively, in COS-treated ripe fruits compared to controls. The volatile metabolome showed that COS application also increased the release of ten volatiles correlated with consumer preference (1-penten-3-one, (E)-2-pentenal, (E)-3-hexen-1-ol, (E)-2-heptenal, 2-isobutylthiazole, phenylacetaldehyde, 2-phenylethanol, 6-methyl-5-hepten-2-one, 6-methyl-5-hepten-2-ol, and β-ionone), contributing to an improved tomato flavor. Moreover, increased transcript levels of genes participating in ethylene biosynthesis, perception, and response along with enhanced ethylene production were observed in COS-treated fruits, suggesting that COS may regulate tomato fruit quality via the ethylene pathway. Taken together, our results indicated that the pre-harvest application of COS could improve tomato fruit quality attributes.
- 1 June 2021
- Published by Royal Society of Chemistry (RSC) in Environmental Science: Processes & Impacts
- Vol. 23 (7) , 1040-1049
Involvement of glucosinolates in the resistance to zinc oxide nanoparticle-induced toxicity and growth inhibition in Arabidopsis
Zinc oxide nanoparticles (ZnO NPs) are widely used to manufacture textile fibers, synthetic rubber, and paint. However, crop yields and quality are threatened by the increased use of metallic NPs in industry, which has resulted in their accumulation in agricultural land. Many studies have shown that plants defend against biotic and abiotic stresses through the activities of metabolites and hormones. However, whether glucosinolates (GSs) are involved in plant responses to ZnO NP-related stress remains unknown. In this study, wild-type (WT) and GS mutant (myb28/29 and cyp79B2/B3) Arabidopsis plants were subjected to ZnO NP stress to address this question. Our results showed that exposure to ZnO NPs promoted GS accumulation and induced the relative messenger RNA (mRNA) expression levels of GS biosynthesis-related genes. Moreover, ZnO NP treatment adversely affected root length, the number of lateral roots, chlorophyll contents, and plant biomass. Importantly, our results showed that root growth, chlorophyll contents, and plant biomass were all decreased in the GS mutants compared with those in WT plants. Overall, our results showed that WT plants tolerated ZnO NP-induced stress more efficiently than the GS mutants, suggesting that GSs are involved in plant resistance to ZnO NP-induced toxicity.
- 1 June 2021
- Published by Royal Society of Chemistry (RSC) in Environmental Science: Processes & Impacts
- Vol. 23 (7) , 1040-1049
Involvement of glucosinolates in the resistance to zinc oxide nanoparticle-induced toxicity and growth inhibition in Arabidopsis
Zinc oxide nanoparticles (ZnO NPs) are widely used to manufacture textile fibers, synthetic rubber, and paint. However, crop yields and quality are threatened by the increased use of metallic NPs in industry, which has resulted in their accumulation in agricultural land. Many studies have shown that plants defend against biotic and abiotic stresses through the activities of metabolites and hormones. However, whether glucosinolates (GSs) are involved in plant responses to ZnO NP-related stress remains unknown. In this study, wild-type (WT) and GS mutant (myb28/29 and cyp79B2/B3) Arabidopsis plants were subjected to ZnO NP stress to address this question. Our results showed that exposure to ZnO NPs promoted GS accumulation and induced the relative messenger RNA (mRNA) expression levels of GS biosynthesis-related genes. Moreover, ZnO NP treatment adversely affected root length, the number of lateral roots, chlorophyll contents, and plant biomass. Importantly, our results showed that root growth, chlorophyll contents, and plant biomass were all decreased in the GS mutants compared with those in WT plants. Overall, our results showed that WT plants tolerated ZnO NP-induced stress more efficiently than the GS mutants, suggesting that GSs are involved in plant resistance to ZnO NP-induced toxicity.