Souvik Mukherjee
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Research Subjects
Research Interests
Souvik Mukherjee has a total of 27 co-authors. Here are the top co-authors by number of shared publications:
Dilipkumar Pal
5 shared publications- Dilipkumar Pal
Guru Ghasidas Vishwavidyalaya (A Central University)
2 shared publications - Satish Balasaheb Nimse
Institute of Applied Chemistry and Department of Chemistry, Hallym University, Chuncheon, 24252, Republic of Korea
2 shared publications - Abdulaziz S. Saeedan
Department of Pharmacology and Toxicology, College of Pharmacy, Prince Sattam Bin Abdulaziz University, Al-Kharj, Saudi Arabia
1 shared publication - Arka Das
Department of Pharmaceutical Chemistry, Acharya and BM Reddy College of Pharmacy, Soldevanahalli, Bengaluru, 560107 Karnataka, India.
1 shared publication - Aziz Eftekhari
Department of Biochemistry, Faculty of Science, Ege University, 35040 Izmir, Turkey
1 shared publication
Latest Publications
- Open Access
- 8 September 2024
- Published by CMB Association in Cellular and Molecular Biology
- Vol. 70 (8) , 39-49
Anti- COVID-19 drug discovery by flavonoid derivatives: an extensive computational drug design approach
The present study deals with the in-silico analyses of several flavonoid derivatives to explore COVID-19 through pharmacophore modelling, molecular docking, molecular dynamics, drug-likeness, and ADME properties. The initial literature study revealed that many flavonoids, including luteolin, quercetin, kaempferol, and baicalin may be useful against SARS β-coronaviruses, prompting the selection of their potential derivatives to investigate their abilities as inhibitors of COVID-19. The findings were streamlined using in silico molecular docking, which revealed promising energy-binding interactions between all flavonoid derivatives and the targeted protein. Notably, compounds 8, 9, 13, and 15 demonstrated higher potency against the coronavirus Mpro protein (PDB ID 6M2N). Compound 8 has a -7.2 Kcal/mol affinity for the protein and binds to it by hydrogen bonding with Gln192 and π-sulfur bonding with Met-165. Compound 9 exhibited a significant interaction with the main protease, demonstrating an affinity of -7.9 kcal/mol. Gln-192, Glu-189, Pro-168, and His-41 were the principle amino acid residues involved in this interaction. The docking score for compound 13 is -7.5 Kcal/mol, and it binds to the protease enzyme by making interactions with Leu-41, π-sigma, and Gln-189. These interactions include hydrogen bonding and π-sulfur. The major protease and compound 15 were found to bind with a favourable affinity of -6.8 Kcal/mol. This finding was further validated through molecular dynamic simulation for 1ns, analysing parameters such as RMSD, RMSF, and RoG profiles. The RoG values for all four of the compounds varied significantly (35.2–36.4). The results demonstrated the stability of the selected compounds during the simulation. After passing the stability testing, the compounds underwent screening for ADME and drug-likeness properties, fulfilling all the necessary criteria. The findings of the study may support further efforts for the discovery and development of safe drugs to treat COVID-19.
- 8 September 2024
- Published by CMB Association in Cellular and Molecular Biology
- Vol. 70 (8) , 39-49
Open AccessAnti- COVID-19 drug discovery by flavonoid derivatives: an extensive computational drug design approach
The present study deals with the in-silico analyses of several flavonoid derivatives to explore COVID-19 through pharmacophore modelling, molecular docking, molecular dynamics, drug-likeness, and ADME properties. The initial literature study revealed that many flavonoids, including luteolin, quercetin, kaempferol, and baicalin may be useful against SARS β-coronaviruses, prompting the selection of their potential derivatives to investigate their abilities as inhibitors of COVID-19. The findings were streamlined using in silico molecular docking, which revealed promising energy-binding interactions between all flavonoid derivatives and the targeted protein. Notably, compounds 8, 9, 13, and 15 demonstrated higher potency against the coronavirus Mpro protein (PDB ID 6M2N). Compound 8 has a -7.2 Kcal/mol affinity for the protein and binds to it by hydrogen bonding with Gln192 and π-sulfur bonding with Met-165. Compound 9 exhibited a significant interaction with the main protease, demonstrating an affinity of -7.9 kcal/mol. Gln-192, Glu-189, Pro-168, and His-41 were the principle amino acid residues involved in this interaction. The docking score for compound 13 is -7.5 Kcal/mol, and it binds to the protease enzyme by making interactions with Leu-41, π-sigma, and Gln-189. These interactions include hydrogen bonding and π-sulfur. The major protease and compound 15 were found to bind with a favourable affinity of -6.8 Kcal/mol. This finding was further validated through molecular dynamic simulation for 1ns, analysing parameters such as RMSD, RMSF, and RoG profiles. The RoG values for all four of the compounds varied significantly (35.2–36.4). The results demonstrated the stability of the selected compounds during the simulation. After passing the stability testing, the compounds underwent screening for ADME and drug-likeness properties, fulfilling all the necessary criteria. The findings of the study may support further efforts for the discovery and development of safe drugs to treat COVID-19.
- Open Access
Polyunsaturated Fatty Acids Mediated Regulation of Membrane Biochemistry and Tumor Cell Membrane Integrity
Particular dramatic macromolecule proteins are responsible for various cellular events in our body system. Lipids have recently recognized a lot more attention of scientists for understanding the relationship between lipid and cellular function and human health However, a biological membrane is formed with a lipid bilayer, which is called a P–L–P design. Our body system is balanced through various communicative signaling pathways derived from biological membrane proteins and lipids. In the case of any fatal disease such as cancer, the biological membrane compositions are altered. To repair the biological membrane composition and prevent cancer, dietary fatty acids, such as omega-3 polyunsaturated fatty acids, are essential in human health but are not directly synthesized in our body system. In this review, we will discuss the alteration of the biological membrane composition in breast cancer. We will highlight the role of dietary fatty acids in altering cellular composition in the P–L–P bilayer. We will also address the importance of omega-3 polyunsaturated fatty acids to regulate the membrane fluidity of cancer cells.
Open AccessPolyunsaturated Fatty Acids Mediated Regulation of Membrane Biochemistry and Tumor Cell Membrane Integrity
Particular dramatic macromolecule proteins are responsible for various cellular events in our body system. Lipids have recently recognized a lot more attention of scientists for understanding the relationship between lipid and cellular function and human health However, a biological membrane is formed with a lipid bilayer, which is called a P–L–P design. Our body system is balanced through various communicative signaling pathways derived from biological membrane proteins and lipids. In the case of any fatal disease such as cancer, the biological membrane compositions are altered. To repair the biological membrane composition and prevent cancer, dietary fatty acids, such as omega-3 polyunsaturated fatty acids, are essential in human health but are not directly synthesized in our body system. In this review, we will discuss the alteration of the biological membrane composition in breast cancer. We will highlight the role of dietary fatty acids in altering cellular composition in the P–L–P bilayer. We will also address the importance of omega-3 polyunsaturated fatty acids to regulate the membrane fluidity of cancer cells.
- 1 April 2021
- Published by Wiley in Phytotherapy Research
- Vol. 35 (8) , 4284-4296
A status report with critical analysis of research trends in exploring medicinal plants as antiviral: Let us dig into the history to predict the future
The review article serves as a mini directory of medicinal plants (662 medicinal plants have been identified) that have been investigated for antiviral property between 2015 and 2019. Data have been extracted from Scopus using specific keywords followed by manual sorting to avoid any duplication. Critical analyses of handpicked data have been presented. Mapping of medicinal plants, followed by critical analysis on the families and plant parts investigated in the said tenure, and its correlation with the participating countries and virus types have been critically analyzed. Interceptive role of phytochemicals in impeding viral replication has also been taken note of. Emphasis on India's exploration of various medicinal plants has also been given. Also presents a tutelage, which is likely to revive the interest in natural products for search of potential antivirals. This review is expected to serve as a rich data bank and as a guiding principle for researchers who are planning to explore medicinal plants in search for potential antiviral. It is time that researchers need to revisit their countries' own history of traditional medicine to predict something worthful in future.
- 1 April 2021
- Published by Wiley in Phytotherapy Research
- Vol. 35 (8) , 4284-4296
A status report with critical analysis of research trends in exploring medicinal plants as antiviral: Let us dig into the history to predict the future
The review article serves as a mini directory of medicinal plants (662 medicinal plants have been identified) that have been investigated for antiviral property between 2015 and 2019. Data have been extracted from Scopus using specific keywords followed by manual sorting to avoid any duplication. Critical analyses of handpicked data have been presented. Mapping of medicinal plants, followed by critical analysis on the families and plant parts investigated in the said tenure, and its correlation with the participating countries and virus types have been critically analyzed. Interceptive role of phytochemicals in impeding viral replication has also been taken note of. Emphasis on India's exploration of various medicinal plants has also been given. Also presents a tutelage, which is likely to revive the interest in natural products for search of potential antivirals. This review is expected to serve as a rich data bank and as a guiding principle for researchers who are planning to explore medicinal plants in search for potential antiviral. It is time that researchers need to revisit their countries' own history of traditional medicine to predict something worthful in future.
- Open Access
- 19 February 2021
- Published by Manuscript Technomedia LLP in Indian Journal of Pharmaceutical Education and Research
- Vol. 55 (1) , 01-10
Cucurbita pepo and Cucurbitacin in the Management of Anti-proliferation by JAK/STAT Pathway
Pumpkin (Cucurbita pepo) is capaciously recycled similar to food and in folk medicine throughout the world. It accords to genus Cucurbita (CCT) under family Cucurbitaceae. There are a plenty of important medicinal phyto-constituents belonging to cucurbitoside like triterpenoids, CART and CCT glycosides. A survey of the literature demonstrates that C. pepo, has the capacity to improve prostatic hyperplasia, urinary dysfunction and cytotoxic properties. Many pharmacological revisions have established its role in hepatoprotection, inhibition of Prst gland cancer (CNCR), anti (Ant) oxidant effects, inhibition of LuG, BRst and triple-negative BRst CNCR by blocking JAK/STAT signaling (Sgls) pathway (Ptw). It has also Ant microbial, Ant -inflammatory, Ant -diabetic and Ant ulcer activities by supporting its traditional claims. Establishment of C. pepo and cucurbitacin (CCBT) in the management of Ant -proliferation by JAK/STAT Ptw. Data towards writing this review are generated through exploration of different websites like MEDLINE (PubMed), Google Scholar, Science Direct, Scopus, Cochrane, SID and Magiran databases. We have selected 2016- 2018 duration for the same purpose. We have found 88 papers related to this topic. CCBT is found to arrest unlimited cell (CEL) division and respective apoptosis (Appt) in vitro and in vivo CNCR models. A plenty of molecular design targeting CCBT have been invented, such as fibrous-actin, Sgls transducer and activator of transcription (STAT), cyclooxygenase-2, etc. This review is minded at CCBT from C. pepo which dwindle the proliferation of human CNCR CEL through the JAK/STAT Ptw.
- 19 February 2021
- Published by Manuscript Technomedia LLP in Indian Journal of Pharmaceutical Education and Research
- Vol. 55 (1) , 01-10
Open AccessCucurbita pepo and Cucurbitacin in the Management of Anti-proliferation by JAK/STAT Pathway
Pumpkin (Cucurbita pepo) is capaciously recycled similar to food and in folk medicine throughout the world. It accords to genus Cucurbita (CCT) under family Cucurbitaceae. There are a plenty of important medicinal phyto-constituents belonging to cucurbitoside like triterpenoids, CART and CCT glycosides. A survey of the literature demonstrates that C. pepo, has the capacity to improve prostatic hyperplasia, urinary dysfunction and cytotoxic properties. Many pharmacological revisions have established its role in hepatoprotection, inhibition of Prst gland cancer (CNCR), anti (Ant) oxidant effects, inhibition of LuG, BRst and triple-negative BRst CNCR by blocking JAK/STAT signaling (Sgls) pathway (Ptw). It has also Ant microbial, Ant -inflammatory, Ant -diabetic and Ant ulcer activities by supporting its traditional claims. Establishment of C. pepo and cucurbitacin (CCBT) in the management of Ant -proliferation by JAK/STAT Ptw. Data towards writing this review are generated through exploration of different websites like MEDLINE (PubMed), Google Scholar, Science Direct, Scopus, Cochrane, SID and Magiran databases. We have selected 2016- 2018 duration for the same purpose. We have found 88 papers related to this topic. CCBT is found to arrest unlimited cell (CEL) division and respective apoptosis (Appt) in vitro and in vivo CNCR models. A plenty of molecular design targeting CCBT have been invented, such as fibrous-actin, Sgls transducer and activator of transcription (STAT), cyclooxygenase-2, etc. This review is minded at CCBT from C. pepo which dwindle the proliferation of human CNCR CEL through the JAK/STAT Ptw.
- 14 January 2021
- Published by Bentham Science Publishers Ltd. in Current Drug Targets
- Vol. 22, 1
GSK-3 Inhibitors: A new class of drugs for Alzheimer's Disease Treatment
: Alzheimer's disease (AD), a chronic neurodegenerative disease, is the most common form of dementia that causes cognitive function impairment, including memory, thinking, and behavioral changes that ultimately lead to death. The over activation of GSK-3, an enzyme from the proline/serine Ki NS family, has been associated with hyper-phosphorylation of tau proteins. Hyper-phosphorylated tau proteins self-assemble to form tangles of straight and helical filaments are known to be involved in AD. Therefore, GSK-3 has been considered a potential target of novel drug discovery for AD treatment. The research on the development of GSK-3 inhibitors has received enormous attention from the vast scientific community because they are targeted for AD and other diseases, including type 2 diabetes, cancers, stroke, Parkinson's disease, bipolar disorder etc. Various drugs originated from synthetic and natural origins have been designed to inhibit GSK-3 activity. However, there is a need to develop novel drug candidates that are selective in the inhibition of GSK3. Hence, this review summarizes the potential of GSK-3 inhibitors for AD therapy. The structure-activity relationship of current drug molecules and the potential problems associated with them are discussed in detail.
- 14 January 2021
- Published by Bentham Science Publishers Ltd. in Current Drug Targets
- Vol. 22, 1
GSK-3 Inhibitors: A new class of drugs for Alzheimer's Disease Treatment
: Alzheimer's disease (AD), a chronic neurodegenerative disease, is the most common form of dementia that causes cognitive function impairment, including memory, thinking, and behavioral changes that ultimately lead to death. The over activation of GSK-3, an enzyme from the proline/serine Ki NS family, has been associated with hyper-phosphorylation of tau proteins. Hyper-phosphorylated tau proteins self-assemble to form tangles of straight and helical filaments are known to be involved in AD. Therefore, GSK-3 has been considered a potential target of novel drug discovery for AD treatment. The research on the development of GSK-3 inhibitors has received enormous attention from the vast scientific community because they are targeted for AD and other diseases, including type 2 diabetes, cancers, stroke, Parkinson's disease, bipolar disorder etc. Various drugs originated from synthetic and natural origins have been designed to inhibit GSK-3 activity. However, there is a need to develop novel drug candidates that are selective in the inhibition of GSK3. Hence, this review summarizes the potential of GSK-3 inhibitors for AD therapy. The structure-activity relationship of current drug molecules and the potential problems associated with them are discussed in detail.
- 15 December 2020
- Published by Springer Nature
- p. 845-862
Medicinal Attribution of Ginsenoside: A Huge Source of Plant Bioactive Compound
- 15 December 2020
- Published by Springer Nature
- p. 845-862
Medicinal Attribution of Ginsenoside: A Huge Source of Plant Bioactive Compound
- 15 December 2020
- Published by Springer Nature
- p. 793-818
Protein and Enzymes Isolated from Plant Sources and Their Utilization in Pharmaceutical Field
- 15 December 2020
- Published by Springer Nature
- p. 793-818
Protein and Enzymes Isolated from Plant Sources and Their Utilization in Pharmaceutical Field
- 15 December 2020
- Published by Springer Nature
- p. 287-309
Capillary Electrophoresis: A New Evolutionary Platform of Plant Secondary Metabolites
- 15 December 2020
- Published by Springer Nature
- p. 287-309
Capillary Electrophoresis: A New Evolutionary Platform of Plant Secondary Metabolites
- 1 January 2020
- Published by Elsevier
- p. 171-182
Chapter 14 - Tamarind (Tamarindus indica) Seeds in Health and Nutrition
- 1 January 2020
- Published by Elsevier
- p. 171-182
Chapter 14 - Tamarind (Tamarindus indica) Seeds in Health and Nutrition
- 1 January 2020
- Published by Elsevier
- p. 161-170
Chapter 13 - Fenugreek (Trigonella foenum) Seeds in Health and Nutrition
- 1 January 2020
- Published by Elsevier
- p. 161-170
Chapter 13 - Fenugreek (Trigonella foenum) Seeds in Health and Nutrition