Jessica Marie Bugeja
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Previous Organizations / Institutes
The organizations / institutes from the scholar's other articles in the past ten years
Research Subjects
Jessica Marie Bugeja has a total of 30 co-authors. Here are the top co-authors by number of shared publications:
Craig Engstrom
School of Human Movement and Nutrition Sciences, Faculty of Health and Behavioural Sciences The University of Queensland Brisbane QLD Australia
3 shared publicationsDavid J. Hunter
Kolling Institute of Medical Research, Sydney Musculoskeletal Health, Faculty of Medicine and Health University of Sydney Sydney NSW Australia
3 shared publicationsJurgen Fripp
Australian e‐Health Research Centre, Health and Biosecurity Commonwealth Scientific and Industrial Research Organisation Brisbane QLD Australia
3 shared publicationsNicholas J. Murphy
Kolling Institute of Medical Research, Sydney Musculoskeletal Health, Faculty of Medicine and Health University of Sydney Sydney NSW Australia
3 shared publicationsShekhar S. Chandra
School of Information Technology and Electrical Engineering, Faculty of Engineering, Architecture and Information Technology The University of Queensland Brisbane QLD Australia
3 shared publicationsStuart Crozier
School of Information Technology and Electrical Engineering, Faculty of Engineering, Architecture and Information Technology The University of Queensland Brisbane QLD Australia
3 shared publications
Latest Publications
- Open Access
- 4 December 2024
- Published by MDPI AG in Journal of Clinical Medicine
- Vol. 13 (23) , 7384
A Pilot Study of PSMA PET/CT and MRI Fusion for Prostate Cancer: Software to Replace PET/MRI Hardware
Introduction: Prostate-specific membrane antigen positron emission tomography/computed tomography (PSMA PET/CT), in combination with magnetic resonance imaging (MRI), may enhance the diagnosis and staging of prostate cancer. Image fusion of separately acquired PET/CT and MRI images serve to facilitate clinical integration and treatment planning. This study aimed to investigate different PSMA PET/CT and MRI image fusion workflows for prostate cancer visualisation. Methods: Eighteen patients with prostate cancer who underwent PSMA PET/CT and MRI prior to radical prostatectomy were retrospectively selected. Alignment of the prostate was performed between PET/CT and MRI via three techniques: semi-automatic rigid, automatic rigid, and automatic non-rigid. Image fusion accuracy was evaluated through boundary and volume agreement, quantified by the Dice Similarity Coefficient (DSC), 95% Hausdorff Distance (HD), and Mean Surface Distance (MSD), with comparison against reconstructed histopathology slices. Results: Image fusion using all techniques resulted in clear lesion visualisation from PSMA PET/CT overlay and anatomical detail afforded by the MRI base and was consistent with histopathology tumour location. Image fusion accuracy was within the recommended range based on a DSC of 0.8–0.9. The automatic non-rigid registration method had the highest volume agreement (DSC: 0.96 ± <0.01) and boundary agreement (HD: 1.17 ± 0.35 mm) when compared to automatic rigid (DSC 0.88 ± 0.02, HD 3.18 ± 0.29 mm) and semi-automatic rigid (DSC 0.80 ± 0.06, HD 5.25 ± 1.68 mm). Conclusions: Image fusion of clinically obtained PET/CT and MRI is feasible and clinically acceptable for use in prostate cancer diagnosis and surgical management. While the best accuracy was observed with the automatic non-rigid technique, which requires further validation, image fusion with clinically accessible methods (semi-automatic rigid) may currently aid patient education, pre-operative planning, and intra-operative guidance.
- 4 December 2024
- Published by MDPI AG in Journal of Clinical Medicine
- Vol. 13 (23) , 7384
Open AccessA Pilot Study of PSMA PET/CT and MRI Fusion for Prostate Cancer: Software to Replace PET/MRI Hardware
Introduction: Prostate-specific membrane antigen positron emission tomography/computed tomography (PSMA PET/CT), in combination with magnetic resonance imaging (MRI), may enhance the diagnosis and staging of prostate cancer. Image fusion of separately acquired PET/CT and MRI images serve to facilitate clinical integration and treatment planning. This study aimed to investigate different PSMA PET/CT and MRI image fusion workflows for prostate cancer visualisation. Methods: Eighteen patients with prostate cancer who underwent PSMA PET/CT and MRI prior to radical prostatectomy were retrospectively selected. Alignment of the prostate was performed between PET/CT and MRI via three techniques: semi-automatic rigid, automatic rigid, and automatic non-rigid. Image fusion accuracy was evaluated through boundary and volume agreement, quantified by the Dice Similarity Coefficient (DSC), 95% Hausdorff Distance (HD), and Mean Surface Distance (MSD), with comparison against reconstructed histopathology slices. Results: Image fusion using all techniques resulted in clear lesion visualisation from PSMA PET/CT overlay and anatomical detail afforded by the MRI base and was consistent with histopathology tumour location. Image fusion accuracy was within the recommended range based on a DSC of 0.8–0.9. The automatic non-rigid registration method had the highest volume agreement (DSC: 0.96 ± <0.01) and boundary agreement (HD: 1.17 ± 0.35 mm) when compared to automatic rigid (DSC 0.88 ± 0.02, HD 3.18 ± 0.29 mm) and semi-automatic rigid (DSC 0.80 ± 0.06, HD 5.25 ± 1.68 mm). Conclusions: Image fusion of clinically obtained PET/CT and MRI is feasible and clinically acceptable for use in prostate cancer diagnosis and surgical management. While the best accuracy was observed with the automatic non-rigid technique, which requires further validation, image fusion with clinically accessible methods (semi-automatic rigid) may currently aid patient education, pre-operative planning, and intra-operative guidance.
- 11 May 2024
- Published by Wiley in Journal of Magnetic Resonance Imaging
- Vol. 61 (2) , 796-797
Editorial for “Reproducibility of Quantitative Double‐Echo Steady‐State T2 Mapping of Knee Cartilage”
- 11 May 2024
- Published by Wiley in Journal of Magnetic Resonance Imaging
- Vol. 61 (2) , 796-797
Editorial for “Reproducibility of Quantitative Double‐Echo Steady‐State T2 Mapping of Knee Cartilage”
- Open Access
- 11 October 2023
- Published by Springer Nature in Physical and Engineering Sciences in Medicine
- Vol. 46 (4) , 1791-1802
Prostate volume analysis in image registration for prostate cancer care: a verification study
Combined magnetic resonance imaging (MRI) and positron emission tomography/computed tomography (PET/CT) may enhance diagnosis, aid surgical planning and intra-operative orientation for prostate biopsy and radical prostatectomy. Although PET-MRI may provide these benefits, PET-MRI machines are not widely available. Image fusion of Prostate specific membrane antigen PET/CT and MRI acquired separately may be a suitable clinical alternative. This study compares CT-MR registration algorithms for urological prostate cancer care. Paired whole-pelvis MR and CT scan data were used (n = 20). A manual prostate CTV contour was performed independently on each patients MR and CT image. A semi-automated rigid-, automated rigid- and automated non-rigid registration technique was applied to align the MR and CT data. Dice Similarity Index (DSI), 95% Hausdorff distance (95%HD) and average surface distance (ASD) measures were used to assess the closeness of the manual and registered contours. The automated non-rigid approach had a significantly improved performance compared to the automated rigid- and semi-automated rigid-registration, having better average scores and decreased spread for the DSI, 95%HD and ASD (all p < 0.001). Additionally, the automated rigid approach had similar significantly improved performance compared to the semi-automated rigid registration across all accuracy metrics observed (all p < 0.001). Overall, all registration techniques studied here demonstrated sufficient accuracy for exploring their clinical use. While the fully automated non-rigid registration algorithm in the present study provided the most accurate registration, the semi-automated rigid registration is a quick, feasible, and accessible method to perform image registration for prostate cancer care by urologists and radiation oncologists now.
- 11 October 2023
- Published by Springer Nature in Physical and Engineering Sciences in Medicine
- Vol. 46 (4) , 1791-1802
Open AccessProstate volume analysis in image registration for prostate cancer care: a verification study
Combined magnetic resonance imaging (MRI) and positron emission tomography/computed tomography (PET/CT) may enhance diagnosis, aid surgical planning and intra-operative orientation for prostate biopsy and radical prostatectomy. Although PET-MRI may provide these benefits, PET-MRI machines are not widely available. Image fusion of Prostate specific membrane antigen PET/CT and MRI acquired separately may be a suitable clinical alternative. This study compares CT-MR registration algorithms for urological prostate cancer care. Paired whole-pelvis MR and CT scan data were used (n = 20). A manual prostate CTV contour was performed independently on each patients MR and CT image. A semi-automated rigid-, automated rigid- and automated non-rigid registration technique was applied to align the MR and CT data. Dice Similarity Index (DSI), 95% Hausdorff distance (95%HD) and average surface distance (ASD) measures were used to assess the closeness of the manual and registered contours. The automated non-rigid approach had a significantly improved performance compared to the automated rigid- and semi-automated rigid-registration, having better average scores and decreased spread for the DSI, 95%HD and ASD (all p < 0.001). Additionally, the automated rigid approach had similar significantly improved performance compared to the semi-automated rigid registration across all accuracy metrics observed (all p < 0.001). Overall, all registration techniques studied here demonstrated sufficient accuracy for exploring their clinical use. While the fully automated non-rigid registration algorithm in the present study provided the most accurate registration, the semi-automated rigid registration is a quick, feasible, and accessible method to perform image registration for prostate cancer care by urologists and radiation oncologists now.
- 10 August 2023
- Published by Wiley in Journal of Orthopaedic Research
- Vol. 42 (2) , 385-394
Analysis of cam location characteristics in FAI syndrome patients from 3D MR images demonstrates sex‐specific differences
Cam femoroacetabular impingement (FAI) syndrome is associated with hip osteoarthritis (OA) development. Hip shape features, derived from statistical shape modeling (SSM), are predictive for OA incidence, progression, and arthroplasty. Currently, no three‐dimensional (3D) SSM studies have investigated whether there are cam shape differences between male and female patients, which may be of potential clinical relevance for FAI syndrome assessments. This study analyzed sex‐specific cam location and shape in FAI syndrome patients from clinical magnetic resonance examinations (M:F 56:41, age: 16–63 years) using 3D focused shape modeling‐based segmentation (CamMorph) and partial least squares regression to obtain shape features (latent variables [LVs]) of cam morphology. Two‐way analysis of variance tests were used to assess cam LV data for sex and cam volume severity differences. There was no significant interaction between sex and cam volume severity for the LV data. A sex main effect was significant for LV 1 (cam size) and LV 2 (cam location) with medium to large effect sizes (p < 0.001, d > 0.75). Mean results revealed males presented with a superior‐focused cam, whereas females presented with an anterior‐focused cam. When stratified by cam volume, cam morphologies were located superiorly in male and anteriorly in female FAI syndrome patients with negligible, mild, or moderate cam volumes. Both male and female FAI syndrome patients with major cam volumes had a global cam distribution. In conclusion, sex‐specific cam location differences are present in FAI syndrome patients with negligible, mild, and moderate cam volumes, whereas major cam volumes were globally distributed in both male and female patients.
- 10 August 2023
- Published by Wiley in Journal of Orthopaedic Research
- Vol. 42 (2) , 385-394
Analysis of cam location characteristics in FAI syndrome patients from 3D MR images demonstrates sex‐specific differences
Cam femoroacetabular impingement (FAI) syndrome is associated with hip osteoarthritis (OA) development. Hip shape features, derived from statistical shape modeling (SSM), are predictive for OA incidence, progression, and arthroplasty. Currently, no three‐dimensional (3D) SSM studies have investigated whether there are cam shape differences between male and female patients, which may be of potential clinical relevance for FAI syndrome assessments. This study analyzed sex‐specific cam location and shape in FAI syndrome patients from clinical magnetic resonance examinations (M:F 56:41, age: 16–63 years) using 3D focused shape modeling‐based segmentation (CamMorph) and partial least squares regression to obtain shape features (latent variables [LVs]) of cam morphology. Two‐way analysis of variance tests were used to assess cam LV data for sex and cam volume severity differences. There was no significant interaction between sex and cam volume severity for the LV data. A sex main effect was significant for LV 1 (cam size) and LV 2 (cam location) with medium to large effect sizes (p < 0.001, d > 0.75). Mean results revealed males presented with a superior‐focused cam, whereas females presented with an anterior‐focused cam. When stratified by cam volume, cam morphologies were located superiorly in male and anteriorly in female FAI syndrome patients with negligible, mild, or moderate cam volumes. Both male and female FAI syndrome patients with major cam volumes had a global cam distribution. In conclusion, sex‐specific cam location differences are present in FAI syndrome patients with negligible, mild, and moderate cam volumes, whereas major cam volumes were globally distributed in both male and female patients.
- 28 November 2022
- Published by University of Queensland Library
Automated Assessment of Cartilage Composition and Cam Morphology using Magnetic Resonance Images of the Hip Joint
The University of Queensland's institutional repository, UQ eSpace, aims to create global visibility and accessibility of UQ’s scholarly research.
- 28 November 2022
- Published by University of Queensland Library
Automated Assessment of Cartilage Composition and Cam Morphology using Magnetic Resonance Images of the Hip Joint
The University of Queensland's institutional repository, UQ eSpace, aims to create global visibility and accessibility of UQ’s scholarly research.
- Open Access
- 1 October 2022
- Published by AME Publishing Company in Quantitative Imaging in Medicine and Surgery
- Vol. 12 (10) , 4924-4941
Automated volumetric and statistical shape assessment of cam-type morphology of the femoral head-neck region from clinical 3D magnetic resonance images
Original Article Automated volumetric and statistical shape assessment of cam-type morphology of the femoral head-neck region from clinical 3D magnetic resonance images Jessica M. Bugeja, Ying Xia, Shekhar S. Chandra, Nicholas J. Murphy, Jillian Eyles, Libby Spiers, Stuart Crozier, David J. Hunter, Jurgen Fripp, Craig Engstrom
- 1 October 2022
- Published by AME Publishing Company in Quantitative Imaging in Medicine and Surgery
- Vol. 12 (10) , 4924-4941
Open AccessAutomated volumetric and statistical shape assessment of cam-type morphology of the femoral head-neck region from clinical 3D magnetic resonance images
Original Article Automated volumetric and statistical shape assessment of cam-type morphology of the femoral head-neck region from clinical 3D magnetic resonance images Jessica M. Bugeja, Ying Xia, Shekhar S. Chandra, Nicholas J. Murphy, Jillian Eyles, Libby Spiers, Stuart Crozier, David J. Hunter, Jurgen Fripp, Craig Engstrom
- Open Access
- 8 June 2022
- Published by Wiley in Arthroscopy, Sports Medicine, and Rehabilitation
- Vol. 4 (4) , e1353-e1362
Automated 3D Analysis of Clinical Magnetic Resonance Images Demonstrates Significant Reductions in Cam Morphology Following Arthroscopic Intervention in Contrast to Physiotherapy
Purpose: To obtain automated measurements of cam volume, surface area, and height from baseline (preintervention) and 12‐month magnetic resonance (MR) images acquired from male and female patients allocated to physiotherapy (PT) or arthroscopic surgery (AS) management for femoroacetabular impingement (FAI) in the Australian FASHIoN trial. Methods: An automated segmentation pipeline (CamMorph) was used to obtain cam morphology data from three‐dimensional (3D) MR hip examinations in FAI patients classified with mild, moderate, or major cam volumes. Pairwise comparisons between baseline and 12‐month cam volume, surface area, and height data were performed within the PT and AS patient groups using paired t ‐tests or Wilcoxon signed‐rank tests. Results: A total of 43 patients were included with 15 PT patients (9 males, 6 females) and 28 AS patients (18 males, 10 females) for premanagement and postmanagement cam morphology assessments. Within the PT male and female patient groups, there were no significant differences between baseline and 12‐month mean cam volume (male: 1269 vs 1288 mm 3 , t [16] = −0.39; female: 545 vs 550 mm, 3 t [10] = −0.78), surface area (male: 1525 vs 1491 mm 2 , t [16] = 0.92; female: 885 vs 925 mm, 2 t [10] = −0.78), maximum height (male: 4.36 vs 4.32 mm, t [16] = 0.34; female: 3.05 vs 2.96 mm, t [10] = 1.05) and average height (male: 2.18 vs 2.18 mm, t [16] = 0.22; female: 1.4 vs 1.43 mm, t [10] = −0.38). In contrast, within the AS male and female patient groups, there were significant differences between baseline and 12‐month cam volume (male: 1343 vs 718 mm 3 , W = 0.0; female: 499 vs 240 mm 3 , t [18] = 2.89), surface area (male: 1520 vs 1031 mm 2 , t (34) = 6.48; female: 782 vs 483 mm 2 , t (18) = 3.02), maximum‐height (male: 4.3 vs 3.42 mm, W = 13.5; female: 2.85 vs 2.24 mm, t (18) = 3.04) and average height (male: 2.17 vs 1.52 mm, W = 3.0; female: 1.4 vs 0.94 mm, W = 3.0). In AS patients, 3D bone models provided good visualization of cam bone mass removal postostectomy. Conclusions: Automated measurement of cam morphology from baseline (preintervention) and 12‐month MR images demonstrated that the cam volume, surface area, maximum‐height, and average height were significantly smaller in AS patients following ostectomy, whereas there were no significant differences in these cam measures in PT patients from the Australian FASHIoN study. Level of Evidence: Level II, cohort study.
- 8 June 2022
- Published by Wiley in Arthroscopy, Sports Medicine, and Rehabilitation
- Vol. 4 (4) , e1353-e1362
Open AccessAutomated 3D Analysis of Clinical Magnetic Resonance Images Demonstrates Significant Reductions in Cam Morphology Following Arthroscopic Intervention in Contrast to Physiotherapy
Purpose: To obtain automated measurements of cam volume, surface area, and height from baseline (preintervention) and 12‐month magnetic resonance (MR) images acquired from male and female patients allocated to physiotherapy (PT) or arthroscopic surgery (AS) management for femoroacetabular impingement (FAI) in the Australian FASHIoN trial. Methods: An automated segmentation pipeline (CamMorph) was used to obtain cam morphology data from three‐dimensional (3D) MR hip examinations in FAI patients classified with mild, moderate, or major cam volumes. Pairwise comparisons between baseline and 12‐month cam volume, surface area, and height data were performed within the PT and AS patient groups using paired t ‐tests or Wilcoxon signed‐rank tests. Results: A total of 43 patients were included with 15 PT patients (9 males, 6 females) and 28 AS patients (18 males, 10 females) for premanagement and postmanagement cam morphology assessments. Within the PT male and female patient groups, there were no significant differences between baseline and 12‐month mean cam volume (male: 1269 vs 1288 mm 3 , t [16] = −0.39; female: 545 vs 550 mm, 3 t [10] = −0.78), surface area (male: 1525 vs 1491 mm 2 , t [16] = 0.92; female: 885 vs 925 mm, 2 t [10] = −0.78), maximum height (male: 4.36 vs 4.32 mm, t [16] = 0.34; female: 3.05 vs 2.96 mm, t [10] = 1.05) and average height (male: 2.18 vs 2.18 mm, t [16] = 0.22; female: 1.4 vs 1.43 mm, t [10] = −0.38). In contrast, within the AS male and female patient groups, there were significant differences between baseline and 12‐month cam volume (male: 1343 vs 718 mm 3 , W = 0.0; female: 499 vs 240 mm 3 , t [18] = 2.89), surface area (male: 1520 vs 1031 mm 2 , t (34) = 6.48; female: 782 vs 483 mm 2 , t (18) = 3.02), maximum‐height (male: 4.3 vs 3.42 mm, W = 13.5; female: 2.85 vs 2.24 mm, t (18) = 3.04) and average height (male: 2.17 vs 1.52 mm, W = 3.0; female: 1.4 vs 0.94 mm, W = 3.0). In AS patients, 3D bone models provided good visualization of cam bone mass removal postostectomy. Conclusions: Automated measurement of cam morphology from baseline (preintervention) and 12‐month MR images demonstrated that the cam volume, surface area, maximum‐height, and average height were significantly smaller in AS patients following ostectomy, whereas there were no significant differences in these cam measures in PT patients from the Australian FASHIoN study. Level of Evidence: Level II, cohort study.
- 14 October 2021
- Published by Wiley in Journal of Magnetic Resonance Imaging
- Vol. 55 (5) , 1547-1548
Editorial for “Q‐Dixon and GRAPPATINI T2 Mapping Parameters: A Whole Spinal Assessment of the Relationships Between Osteoporosis and Intervertebral Disc Degeneration”
- 14 October 2021
- Published by Wiley in Journal of Magnetic Resonance Imaging
- Vol. 55 (5) , 1547-1548
Editorial for “Q‐Dixon and GRAPPATINI T2 Mapping Parameters: A Whole Spinal Assessment of the Relationships Between Osteoporosis and Intervertebral Disc Degeneration”
- 1 October 2021
- Published by Elsevier in Magnetic Resonance Imaging
- Vol. 82, 42-54
Automated analysis of immediate reliability of T2 and T2* relaxation times of hip joint cartilage from 3 T MR examinations
- 1 October 2021
- Published by Elsevier in Magnetic Resonance Imaging
- Vol. 82, 42-54
Automated analysis of immediate reliability of T2 and T2* relaxation times of hip joint cartilage from 3 T MR examinations