Atsuko Kobayashi
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Atsuko Kobayashi has a total of 174 co-authors. Here are the top co-authors by number of shared publications:
- Joseph L. Kirschvink
Division of Geological and Planetary Sciences California Institute of Technology Pasadena CA USA
10 shared publications Takahisa Taguchi
Research Institute of Cell Engineering, National Institute of Advanced Industrial Science and Technology, Midorigaoka 1-8-31, Ikeda-city, Osaka 563-8577, Japan
6 shared publicationsHitoshi Yamamoto
Department of Macromolecular Science, Graduate School of Science, Osaka University, 1‐1 Machikaneyama, Toyonaka, Osaka 560‐0043, Japan
5 shared publications- Robert E. Kopp
Department of Earth and Planetary Sciences, Rutgers University, Piscataway, NJ, USA
5 shared publications Kazuyuki Takahashi
Department of Macromolecular Science, Graduate School of Science, Osaka University,Toyonaka,Japan
4 shared publicationsMototsugu Doi
Department of Macromolecular Science, Graduate School of Science, Osaka University,Toyonaka,Japan
4 shared publications
Latest Publications
- Open Access
- 6 November 2024
- Published by American Geophysical Union (AGU) in AGU Advances
- Vol. 5 (6)
Evidence for Magnetically‐Driven Accretion in the Distal Solar System
Paleomagnetic measurements of meteorites indicate that magnetic fields existed in the inner solar nebula capable of driving accretion at rates similar to those observed for young stellar objects with protoplanetary disks. However, the field strength in the solar system beyond ∼7 astronomical units (AU) and its role in accretion remain poorly constrained. Returned samples from asteroid (162173) Ryugu offer the possibility of determining the nebular field intensity in this distal region. Here, we report paleomagnetic studies of three Ryugu particles which reveal that alteration occurred in the presence of a null or relatively weak (80 μT) magnetic field and weak or null field (<3 μT). In addition, we re‐examine previous paleomagnetic and Mn‐Cr chronometry studies of three other distally‐sourced meteorites, Tagish Lake, Tarda, and Wisconsin Range 91600, which measured paleointensities of <0.9, <1.7 and 5.1 ± 4.5 μT respectively. While it was previously unclear whether these records were acquired while the nebula was present, our re‐analysis suggests that their records are sufficiently old (i.e., <3.5 Ma after solar system formation) to be nebular in origin. Collectively, these data demonstrate that the distal solar system nebular field, while faint, was likely still strong enough to drive accretion at rates like those observed in the inner solar system.
- 6 November 2024
- Published by American Geophysical Union (AGU) in AGU Advances
- Vol. 5 (6)
Open AccessEvidence for Magnetically‐Driven Accretion in the Distal Solar System
Paleomagnetic measurements of meteorites indicate that magnetic fields existed in the inner solar nebula capable of driving accretion at rates similar to those observed for young stellar objects with protoplanetary disks. However, the field strength in the solar system beyond ∼7 astronomical units (AU) and its role in accretion remain poorly constrained. Returned samples from asteroid (162173) Ryugu offer the possibility of determining the nebular field intensity in this distal region. Here, we report paleomagnetic studies of three Ryugu particles which reveal that alteration occurred in the presence of a null or relatively weak (80 μT) magnetic field and weak or null field (<3 μT). In addition, we re‐examine previous paleomagnetic and Mn‐Cr chronometry studies of three other distally‐sourced meteorites, Tagish Lake, Tarda, and Wisconsin Range 91600, which measured paleointensities of <0.9, <1.7 and 5.1 ± 4.5 μT respectively. While it was previously unclear whether these records were acquired while the nebula was present, our re‐analysis suggests that their records are sufficiently old (i.e., <3.5 Ma after solar system formation) to be nebular in origin. Collectively, these data demonstrate that the distal solar system nebular field, while faint, was likely still strong enough to drive accretion at rates like those observed in the inner solar system.
- Open Access
- 18 September 2024
- Published by Springer Nature in Communications Biology
- Vol. 7 (1) , 1-10
Biophysical evidence that frostbite is triggered on nanocrystals of biogenic magnetite in garlic cloves (Allium sativum)
Trace levels of biologically precipitated magnetite (Fe3O4) nanocrystals are present in the tissues of many living organisms, including those of plants. Recent work has also shown that magnetite nanoparticles are powerful ice nucleation particles (INPs) that can initiate heterogeneous freezing in supercooled water just below the normal melting temperature. Hence there is a strong possibility that magnetite in plant tissues might be an agent responsible for triggering frost damage, even though the biological role of magnetite in plants is not understood. To test this hypothesis, we investigated supercooling and freezing mortality in cloves of garlic (Allium sativum), a species which is known to have moderate frost resistance. Using superconducting magnetometry, we detected large numbers of magnetite INPs within individual cloves. Oscillating magnetic fields designed to torque magnetite crystals in situ and disturb the ice nucleating process produced significant effects on the temperature distribution of supercooling, thereby confirming magnetite’s role as an INP in vivo. However, weak oscillating fields increased the probability of freezing, whereas stronger fields decreased it, a result that predicts the presence of magnetite binding agents that are loosely attached to the ice nucleating sites on the magnetite crystals.
- 18 September 2024
- Published by Springer Nature in Communications Biology
- Vol. 7 (1) , 1-10
Open AccessBiophysical evidence that frostbite is triggered on nanocrystals of biogenic magnetite in garlic cloves (Allium sativum)
Trace levels of biologically precipitated magnetite (Fe3O4) nanocrystals are present in the tissues of many living organisms, including those of plants. Recent work has also shown that magnetite nanoparticles are powerful ice nucleation particles (INPs) that can initiate heterogeneous freezing in supercooled water just below the normal melting temperature. Hence there is a strong possibility that magnetite in plant tissues might be an agent responsible for triggering frost damage, even though the biological role of magnetite in plants is not understood. To test this hypothesis, we investigated supercooling and freezing mortality in cloves of garlic (Allium sativum), a species which is known to have moderate frost resistance. Using superconducting magnetometry, we detected large numbers of magnetite INPs within individual cloves. Oscillating magnetic fields designed to torque magnetite crystals in situ and disturb the ice nucleating process produced significant effects on the temperature distribution of supercooling, thereby confirming magnetite’s role as an INP in vivo. However, weak oscillating fields increased the probability of freezing, whereas stronger fields decreased it, a result that predicts the presence of magnetite binding agents that are loosely attached to the ice nucleating sites on the magnetite crystals.
- Open Access
- 24 April 2020
- Published by Springer Nature in Nature Communications
- Vol. 11 (1) , 1-7
In-situ preservation of nitrogen-bearing organics in Noachian Martian carbonates
Understanding the origin of organic material on Mars is a major issue in modern planetary science. Recent robotic exploration of Martian sedimentary rocks and laboratory analyses of Martian meteorites have both reported plausible indigenous organic components. However, little is known about their origin, evolution, and preservation. Here we report that 4-billion-year-old (Ga) carbonates in Martian meteorite, Allan Hills 84001, preserve indigenous nitrogen(N)-bearing organics by developing a new technique for high-spatial resolution in situ N-chemical speciation. The organic materials were synthesized locally and/or delivered meteoritically on Mars during Noachian age. The carbonates, alteration minerals from the Martian near-surface aqueous fluid, trapped and kept the organic materials intact over long geological times. This presence of N-bearing compounds requires abiotic or possibly biotic N-fixation and ammonia storage, suggesting that early Mars had a less oxidizing environment than today.
- 24 April 2020
- Published by Springer Nature in Nature Communications
- Vol. 11 (1) , 1-7
Open AccessIn-situ preservation of nitrogen-bearing organics in Noachian Martian carbonates
Understanding the origin of organic material on Mars is a major issue in modern planetary science. Recent robotic exploration of Martian sedimentary rocks and laboratory analyses of Martian meteorites have both reported plausible indigenous organic components. However, little is known about their origin, evolution, and preservation. Here we report that 4-billion-year-old (Ga) carbonates in Martian meteorite, Allan Hills 84001, preserve indigenous nitrogen(N)-bearing organics by developing a new technique for high-spatial resolution in situ N-chemical speciation. The organic materials were synthesized locally and/or delivered meteoritically on Mars during Noachian age. The carbonates, alteration minerals from the Martian near-surface aqueous fluid, trapped and kept the organic materials intact over long geological times. This presence of N-bearing compounds requires abiotic or possibly biotic N-fixation and ammonia storage, suggesting that early Mars had a less oxidizing environment than today.
- 14 January 2019
- Published by Springer Nature in Nature Astronomy
- Vol. 3 (2) , 116-120
The next frontier for planetary and human exploration
- 14 January 2019
- Published by Springer Nature in Nature Astronomy
- Vol. 3 (2) , 116-120
The next frontier for planetary and human exploration
- Open Access
- 7 May 2018
- Published by National Academy of Sciences in Proceedings of the National Academy of Sciences
- Vol. 115 (21) , 5383-5388
Magnetic control of heterogeneous ice nucleation with nanophase magnetite: Biophysical and agricultural implications
In supercooled water, ice nucleation is a stochastic process that requires ∼250–300 molecules to transiently achieve structural ordering before an embryonic seed crystal can nucleate. This happens most easily on crystalline surfaces, in a process termed heterogeneous nucleation; without such surfaces, water droplets will supercool to below −30 °C before eventually freezing homogeneously. A variety of fundamental processes depends on heterogeneous ice nucleation, ranging from desert-blown dust inducing precipitation in clouds to frost resistance in plants. Recent experiments have shown that crystals of nanophase magnetite (Fe3O4) are powerful nucleation sites for this heterogeneous crystallization of ice, comparable to other materials like silver iodide and some cryobacterial peptides. In natural materials containing magnetite, its ferromagnetism offers the possibility that magneto-mechanical motion induced by external oscillating magnetic fields could act to disrupt the water–crystal interface, inhibiting the heterogeneous nucleation process in subfreezing water and promoting supercooling. For this to act, the magneto-mechanical rotation of the particles should be higher than the magnitude of Brownian motions. We report here that 10-Hz precessing magnetic fields, at strengths of 1 mT and above, on ∼50-nm magnetite crystals dispersed in ultrapure water, meet these criteria and do indeed produce highly significant supercooling. Using these rotating magnetic fields, we were able to elicit supercooling in two representative plant and animal tissues (celery and bovine muscle), both of which have detectable, natural levels of ferromagnetic material. Tailoring magnetic oscillations for the magnetite particle size distribution in different tissues could maximize this supercooling effect. Significance Ice crystallization affects processes as divergent as cloud formation and rain seeding, to the growth, transportation, and preservation of the human food supply. Recent estimates show that nearly 40% of all food is lost between the farm and the kitchen, and much of this is due to cellular damage from freezing. The discovery that nanocrystals of magnetite are one of nature’s most potent ice nucleation materials indicates that this mineral, naturally present in many plant and animal tissues, is responsible for frost and freezer damage. As ice formed from supercooled water is less damaging to tissues, the ability to control ice nucleation with magnetic fields offers the promise of developing better technologies to minimize agricultural waste.
- 7 May 2018
- Published by National Academy of Sciences in Proceedings of the National Academy of Sciences
- Vol. 115 (21) , 5383-5388
Open AccessMagnetic control of heterogeneous ice nucleation with nanophase magnetite: Biophysical and agricultural implications
In supercooled water, ice nucleation is a stochastic process that requires ∼250–300 molecules to transiently achieve structural ordering before an embryonic seed crystal can nucleate. This happens most easily on crystalline surfaces, in a process termed heterogeneous nucleation; without such surfaces, water droplets will supercool to below −30 °C before eventually freezing homogeneously. A variety of fundamental processes depends on heterogeneous ice nucleation, ranging from desert-blown dust inducing precipitation in clouds to frost resistance in plants. Recent experiments have shown that crystals of nanophase magnetite (Fe3O4) are powerful nucleation sites for this heterogeneous crystallization of ice, comparable to other materials like silver iodide and some cryobacterial peptides. In natural materials containing magnetite, its ferromagnetism offers the possibility that magneto-mechanical motion induced by external oscillating magnetic fields could act to disrupt the water–crystal interface, inhibiting the heterogeneous nucleation process in subfreezing water and promoting supercooling. For this to act, the magneto-mechanical rotation of the particles should be higher than the magnitude of Brownian motions. We report here that 10-Hz precessing magnetic fields, at strengths of 1 mT and above, on ∼50-nm magnetite crystals dispersed in ultrapure water, meet these criteria and do indeed produce highly significant supercooling. Using these rotating magnetic fields, we were able to elicit supercooling in two representative plant and animal tissues (celery and bovine muscle), both of which have detectable, natural levels of ferromagnetic material. Tailoring magnetic oscillations for the magnetite particle size distribution in different tissues could maximize this supercooling effect. Significance Ice crystallization affects processes as divergent as cloud formation and rain seeding, to the growth, transportation, and preservation of the human food supply. Recent estimates show that nearly 40% of all food is lost between the farm and the kitchen, and much of this is due to cellular damage from freezing. The discovery that nanocrystals of magnetite are one of nature’s most potent ice nucleation materials indicates that this mineral, naturally present in many plant and animal tissues, is responsible for frost and freezer damage. As ice formed from supercooled water is less damaging to tissues, the ability to control ice nucleation with magnetic fields offers the promise of developing better technologies to minimize agricultural waste.
- Open Access
- 30 June 2016
- Published by Frontiers Media SA in Frontiers in Plant Science
- Vol. 7, 952
Primitive Extracellular Lipid Components on the Surface of the Charophytic Alga Klebsormidium flaccidum and Their Possible Biosynthetic Pathways as Deduced from the Genome Sequence
Klebsormidium flaccidum is a charophytic alga living in terrestrial and semiaquatic environments. K. flaccidum grows in various habitats, such as low-temperature areas and under desiccated conditions, because of its ability to tolerate harsh environments. Wax and cuticle polymers that contribute to the cuticle layer of plants are important for the survival of land plants, as they protect against those harsh environmental conditions and were probably critical for the transition from aquatic microorganism to land plants. Bryophytes, non-vascular land plants, have similar, but simpler, extracellular waxes and polyester backbones than those of vascular plants. The presence of waxes in terrestrial algae, especially in charophytes, which are the closest algae to land plants, could provide clues in elucidating the mechanism of land colonization by plants. Here, we compared genes involved in the lipid biosynthetic pathways of Arabidopsis thaliana to the K. flaccidum and the Chlamydomonas reinhardtii genomes, and identified wax-related genes in both algae. A simple and easy extraction method was developed for the recovery of the surface lipids from K. flaccidum and C. reinhardtii. Although these algae have wax components, their surface lipids were largely different from those of land plants. We also investigated aliphatic substances in the cell wall fraction of K. flaccidum and C. reinhardtii. Many of the fatty acids were determined to be lipophilic monomers in K. flaccidum, and a Fourier transform infrared spectroscopic analysis revealed that their possible binding mode was distinct from that of A. thaliana. Thus, we propose that K. flaccidum has a cuticle-like hydrophobic layer composed of lipids and glycoproteins, with a different composition from the cutin polymer typically found in land plant cuticles.
- 30 June 2016
- Published by Frontiers Media SA in Frontiers in Plant Science
- Vol. 7, 952
Open AccessPrimitive Extracellular Lipid Components on the Surface of the Charophytic Alga Klebsormidium flaccidum and Their Possible Biosynthetic Pathways as Deduced from the Genome Sequence
Klebsormidium flaccidum is a charophytic alga living in terrestrial and semiaquatic environments. K. flaccidum grows in various habitats, such as low-temperature areas and under desiccated conditions, because of its ability to tolerate harsh environments. Wax and cuticle polymers that contribute to the cuticle layer of plants are important for the survival of land plants, as they protect against those harsh environmental conditions and were probably critical for the transition from aquatic microorganism to land plants. Bryophytes, non-vascular land plants, have similar, but simpler, extracellular waxes and polyester backbones than those of vascular plants. The presence of waxes in terrestrial algae, especially in charophytes, which are the closest algae to land plants, could provide clues in elucidating the mechanism of land colonization by plants. Here, we compared genes involved in the lipid biosynthetic pathways of Arabidopsis thaliana to the K. flaccidum and the Chlamydomonas reinhardtii genomes, and identified wax-related genes in both algae. A simple and easy extraction method was developed for the recovery of the surface lipids from K. flaccidum and C. reinhardtii. Although these algae have wax components, their surface lipids were largely different from those of land plants. We also investigated aliphatic substances in the cell wall fraction of K. flaccidum and C. reinhardtii. Many of the fatty acids were determined to be lipophilic monomers in K. flaccidum, and a Fourier transform infrared spectroscopic analysis revealed that their possible binding mode was distinct from that of A. thaliana. Thus, we propose that K. flaccidum has a cuticle-like hydrophobic layer composed of lipids and glycoproteins, with a different composition from the cutin polymer typically found in land plant cuticles.
- Open Access
- 1 June 2016
- Published by Elsevier in Cryobiology
- Vol. 72 (3) , 216-224
A first test of the hypothesis of biogenic magnetite-based heterogeneous ice-crystal nucleation in cryopreservation
- 1 June 2016
- Published by Elsevier in Cryobiology
- Vol. 72 (3) , 216-224
Open AccessA first test of the hypothesis of biogenic magnetite-based heterogeneous ice-crystal nucleation in cryopreservation
- 17 July 2014
- Published by Springer Nature in Journal of Molecular Neuroscience
- Vol. 53 (3) , 525-536
lynx1 Supports Neuronal Health in the Mouse Dorsal Striatum During Aging: an Ultrastructural Investigation
Nicotinic acetylcholine receptors have been shown to participate in neuroprotection in the aging brain. Lynx protein modulators dampen the activity of the cholinergic system through direct interaction with nicotinic receptors. Although lynx1 null mutant mice exhibit augmented learning and plasticity, they also exhibit macroscopic vacuolation in the dorsal striatum as they age, detectable at the optical microscope level. Despite the relevance of the lynx1 gene to brain function, little is known about the cellular ultrastructure of these age-related changes. In this study, we assessed degeneration in the dorsal striatum in 1-, 3-, 7-, and 13-month-old mice, using optical and transmission electron microscopy. We observed a loss of nerve fibers, a breakdown in nerve fiber bundles, and a loss of neuronal nuclei in the 13-month-old lynx1 null striatum. At higher magnification, these nerve fibers displayed intracellular vacuoles and disordered myelin sheaths. Few or none of these morphological alterations were present in younger lynx1 null mutant mice or in heterozygous lynx1 null mutant mice at any age. These data indicate that neuronal health can be maintained by titrating lynx1 dosage and that the lynx1 gene may participate in a trade-off between neuroprotection and augmented learning.
- 17 July 2014
- Published by Springer Nature in Journal of Molecular Neuroscience
- Vol. 53 (3) , 525-536
lynx1 Supports Neuronal Health in the Mouse Dorsal Striatum During Aging: an Ultrastructural Investigation
Nicotinic acetylcholine receptors have been shown to participate in neuroprotection in the aging brain. Lynx protein modulators dampen the activity of the cholinergic system through direct interaction with nicotinic receptors. Although lynx1 null mutant mice exhibit augmented learning and plasticity, they also exhibit macroscopic vacuolation in the dorsal striatum as they age, detectable at the optical microscope level. Despite the relevance of the lynx1 gene to brain function, little is known about the cellular ultrastructure of these age-related changes. In this study, we assessed degeneration in the dorsal striatum in 1-, 3-, 7-, and 13-month-old mice, using optical and transmission electron microscopy. We observed a loss of nerve fibers, a breakdown in nerve fiber bundles, and a loss of neuronal nuclei in the 13-month-old lynx1 null striatum. At higher magnification, these nerve fibers displayed intracellular vacuoles and disordered myelin sheaths. Few or none of these morphological alterations were present in younger lynx1 null mutant mice or in heterozygous lynx1 null mutant mice at any age. These data indicate that neuronal health can be maintained by titrating lynx1 dosage and that the lynx1 gene may participate in a trade-off between neuroprotection and augmented learning.
- Open Access
- 1 April 2014
- Published by Elsevier in Cryobiology
- Vol. 68 (2) , 163-165
A ferromagnetic model for the action of electric and magnetic fields in cryopreservation
- 1 April 2014
- Published by Elsevier in Cryobiology
- Vol. 68 (2) , 163-165
Open AccessA ferromagnetic model for the action of electric and magnetic fields in cryopreservation
- 31 December 2009
- Published by Elsevier in Ultramicroscopy
- Vol. 110 (1) , 1-6
Technical note: A tool for determining rotational tilt axis with or without fiducial markers
- 31 December 2009
- Published by Elsevier in Ultramicroscopy
- Vol. 110 (1) , 1-6
Technical note: A tool for determining rotational tilt axis with or without fiducial markers