Patryk Hejduk
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Previous Organizations / Institutes
The organizations / institutes from the scholar's other articles in the past ten years
Research Subjects
Patryk Hejduk has a total of 29 co-authors. Here are the top co-authors by number of shared publications:
- Cristina Rossi
Institute of Diagnostic and Interventional Radiology, University Hospital Zürich, Switzerland
6 shared publications - Andreas Boss
Institute of Diagnostic and Interventional Radiology, University Hospital Zurich, Raemistrasse 100, 8091 Zurich, Switzerland
5 shared publications - Anna Landsmann
Institute of Diagnostic and Interventional Radiology, University Hospital Zürich, Switzerland
5 shared publications - Alexander Ciritsis
Institute of Diagnostic and Interventional Radiology, University Hospital Zürich, Switzerland
4 shared publications - Karol Borkowski
Institute of Diagnostic and Interventional Radiology, University Hospital Zürich, Switzerland
4 shared publications Alexander Ciritsis
Institute of Diagnostic and Interventional Radiology, University Hospital Zurich, Zurich, Switzerland
2 shared publications
Latest Publications
- Open Access
- 31 May 2024
- Published by MDPI AG in Bioengineering
- Vol. 11 (6) , 556
Explainable Precision Medicine in Breast MRI: A Combined Radiomics and Deep Learning Approach for the Classification of Contrast Agent Uptake
In DCE-MRI, the degree of contrast uptake in normal fibroglandular tissue, i.e., background parenchymal enhancement (BPE), is a crucial biomarker linked to breast cancer risk and treatment outcome. In accordance with the Breast Imaging Reporting & Data System (BI-RADS), it should be visually classified into four classes. The susceptibility of such an assessment to inter-reader variability highlights the urgent need for a standardized classification algorithm. In this retrospective study, the first post-contrast subtraction images for 27 healthy female subjects were included. The BPE was classified slice-wise by two expert radiologists. The extraction of radiomic features from segmented BPE was followed by dataset splitting and dimensionality reduction. The latent representations were then utilized as inputs to a deep neural network classifying BPE into BI-RADS classes. The network’s predictions were elucidated at the radiomic feature level with Shapley values. The deep neural network achieved a BPE classification accuracy of 84 ± 2% (p-value < 0.00001). Most of the misclassifications involved adjacent classes. Different radiomic features were decisive for the prediction of each BPE class underlying the complexity of the decision boundaries. A highly precise and explainable pipeline for BPE classification was achieved without user- or algorithm-dependent radiomic feature selection.
- 31 May 2024
- Published by MDPI AG in Bioengineering
- Vol. 11 (6) , 556
Open AccessExplainable Precision Medicine in Breast MRI: A Combined Radiomics and Deep Learning Approach for the Classification of Contrast Agent Uptake
In DCE-MRI, the degree of contrast uptake in normal fibroglandular tissue, i.e., background parenchymal enhancement (BPE), is a crucial biomarker linked to breast cancer risk and treatment outcome. In accordance with the Breast Imaging Reporting & Data System (BI-RADS), it should be visually classified into four classes. The susceptibility of such an assessment to inter-reader variability highlights the urgent need for a standardized classification algorithm. In this retrospective study, the first post-contrast subtraction images for 27 healthy female subjects were included. The BPE was classified slice-wise by two expert radiologists. The extraction of radiomic features from segmented BPE was followed by dataset splitting and dimensionality reduction. The latent representations were then utilized as inputs to a deep neural network classifying BPE into BI-RADS classes. The network’s predictions were elucidated at the radiomic feature level with Shapley values. The deep neural network achieved a BPE classification accuracy of 84 ± 2% (p-value < 0.00001). Most of the misclassifications involved adjacent classes. Different radiomic features were decisive for the prediction of each BPE class underlying the complexity of the decision boundaries. A highly precise and explainable pipeline for BPE classification was achieved without user- or algorithm-dependent radiomic feature selection.
- Open Access
- 18 May 2023
- Published by Springer Nature in Insights into Imaging
- Vol. 14 (1) , 1-9
Automatic and standardized quality assurance of digital mammography and tomosynthesis with deep convolutional neural networks
Objectives: The aim of this study was to develop and validate a commercially available AI platform for the automatic determination of image quality in mammography and tomosynthesis considering a standardized set of features.Materials and methods: In this retrospective study, 11,733 mammograms and synthetic 2D reconstructions from tomosynthesis of 4200 patients from two institutions were analyzed by assessing the presence of seven features which impact image quality in regard to breast positioning. Deep learning was applied to train five dCNN models on features detecting the presence of anatomical landmarks and three dCNN models for localization features. The validity of models was assessed by the calculation of the mean squared error in a test dataset and was compared to the reading by experienced radiologists.Results: Accuracies of the dCNN models ranged between 93.0% for the nipple visualization and 98.5% for the depiction of the pectoralis muscle in the CC view. Calculations based on regression models allow for precise measurements of distances and angles of breast positioning on mammograms and synthetic 2D reconstructions from tomosynthesis. All models showed almost perfect agreement compared to human reading with Cohen’s kappa scores above 0.9.Conclusions: An AI-based quality assessment system using a dCNN allows for precise, consistent and observer-independent rating of digital mammography and synthetic 2D reconstructions from tomosynthesis. Automation and standardization of quality assessment enable real-time feedback to technicians and radiologists that shall reduce a number of inadequate examinations according to PGMI (Perfect, Good, Moderate, Inadequate) criteria, reduce a number of recalls and provide a dependable training platform for inexperienced technicians.
- 18 May 2023
- Published by Springer Nature in Insights into Imaging
- Vol. 14 (1) , 1-9
Open AccessAutomatic and standardized quality assurance of digital mammography and tomosynthesis with deep convolutional neural networks
Objectives: The aim of this study was to develop and validate a commercially available AI platform for the automatic determination of image quality in mammography and tomosynthesis considering a standardized set of features.Materials and methods: In this retrospective study, 11,733 mammograms and synthetic 2D reconstructions from tomosynthesis of 4200 patients from two institutions were analyzed by assessing the presence of seven features which impact image quality in regard to breast positioning. Deep learning was applied to train five dCNN models on features detecting the presence of anatomical landmarks and three dCNN models for localization features. The validity of models was assessed by the calculation of the mean squared error in a test dataset and was compared to the reading by experienced radiologists.Results: Accuracies of the dCNN models ranged between 93.0% for the nipple visualization and 98.5% for the depiction of the pectoralis muscle in the CC view. Calculations based on regression models allow for precise measurements of distances and angles of breast positioning on mammograms and synthetic 2D reconstructions from tomosynthesis. All models showed almost perfect agreement compared to human reading with Cohen’s kappa scores above 0.9.Conclusions: An AI-based quality assessment system using a dCNN allows for precise, consistent and observer-independent rating of digital mammography and synthetic 2D reconstructions from tomosynthesis. Automation and standardization of quality assessment enable real-time feedback to technicians and radiologists that shall reduce a number of inadequate examinations according to PGMI (Perfect, Good, Moderate, Inadequate) criteria, reduce a number of recalls and provide a dependable training platform for inexperienced technicians.
- Open Access
- 28 December 2022
- Published by Elsevier in Clinical Imaging
- Vol. 95, 28-36
Detection of microcalcifications in photon-counting dedicated breast-CT using a deep convolutional neural network: Proof of principle
- 28 December 2022
- Published by Elsevier in Clinical Imaging
- Vol. 95, 28-36
Open AccessDetection of microcalcifications in photon-counting dedicated breast-CT using a deep convolutional neural network: Proof of principle
- Open Access
- 28 June 2022
- Published by MDPI AG in Diagnostics
- Vol. 12 (7) , 1564
BI-RADS-Based Classification of Mammographic Soft Tissue Opacities Using a Deep Convolutional Neural Network
The aim of this study was to investigate the potential of a machine learning algorithm to classify breast cancer solely by the presence of soft tissue opacities in mammograms, independent of other morphological features, using a deep convolutional neural network (dCNN). Soft tissue opacities were classified based on their radiological appearance using the ACR BI-RADS atlas. We included 1744 mammograms from 438 patients to create 7242 icons by manual labeling. The icons were sorted into three categories: “no opacities” (BI-RADS 1), “probably benign opacities” (BI-RADS 2/3) and “suspicious opacities” (BI-RADS 4/5). A dCNN was trained (70% of data), validated (20%) and finally tested (10%). A sliding window approach was applied to create colored probability maps for visual impression. Diagnostic performance of the dCNN was compared to human readout by experienced radiologists on a “real-world” dataset. The accuracies of the models on the test dataset ranged between 73.8% and 89.8%. Compared to human readout, our dCNN achieved a higher specificity (100%, 95% CI: 85.4–100%; reader 1: 86.2%, 95% CI: 67.4–95.5%; reader 2: 79.3%, 95% CI: 59.7–91.3%), and the sensitivity (84.0%, 95% CI: 63.9–95.5%) was lower than that of human readers (reader 1:88.0%, 95% CI: 67.4–95.4%; reader 2:88.0%, 95% CI: 67.7–96.8%). In conclusion, a dCNN can be used for the automatic detection as well as the standardized and observer-independent classification of soft tissue opacities in mammograms independent of the presence of microcalcifications. Human decision making in accordance with the BI-RADS classification can be mimicked by artificial intelligence.
- 28 June 2022
- Published by MDPI AG in Diagnostics
- Vol. 12 (7) , 1564
Open AccessBI-RADS-Based Classification of Mammographic Soft Tissue Opacities Using a Deep Convolutional Neural Network
The aim of this study was to investigate the potential of a machine learning algorithm to classify breast cancer solely by the presence of soft tissue opacities in mammograms, independent of other morphological features, using a deep convolutional neural network (dCNN). Soft tissue opacities were classified based on their radiological appearance using the ACR BI-RADS atlas. We included 1744 mammograms from 438 patients to create 7242 icons by manual labeling. The icons were sorted into three categories: “no opacities” (BI-RADS 1), “probably benign opacities” (BI-RADS 2/3) and “suspicious opacities” (BI-RADS 4/5). A dCNN was trained (70% of data), validated (20%) and finally tested (10%). A sliding window approach was applied to create colored probability maps for visual impression. Diagnostic performance of the dCNN was compared to human readout by experienced radiologists on a “real-world” dataset. The accuracies of the models on the test dataset ranged between 73.8% and 89.8%. Compared to human readout, our dCNN achieved a higher specificity (100%, 95% CI: 85.4–100%; reader 1: 86.2%, 95% CI: 67.4–95.5%; reader 2: 79.3%, 95% CI: 59.7–91.3%), and the sensitivity (84.0%, 95% CI: 63.9–95.5%) was lower than that of human readers (reader 1:88.0%, 95% CI: 67.4–95.4%; reader 2:88.0%, 95% CI: 67.7–96.8%). In conclusion, a dCNN can be used for the automatic detection as well as the standardized and observer-independent classification of soft tissue opacities in mammograms independent of the presence of microcalcifications. Human decision making in accordance with the BI-RADS classification can be mimicked by artificial intelligence.
- Open Access
- 29 May 2022
- Published by MDPI AG in Diagnostics
- Vol. 12 (6) , 1347
Detecting Abnormal Axillary Lymph Nodes on Mammograms Using a Deep Convolutional Neural Network
The purpose of this study was to determine the feasibility of a deep convolutional neural network (dCNN) to accurately detect abnormal axillary lymph nodes on mammograms. In this retrospective study, 107 mammographic images in mediolateral oblique projection from 74 patients were labeled to three classes: (1) “breast tissue”, (2) “benign lymph nodes”, and (3) “suspicious lymph nodes”. Following data preprocessing, a dCNN model was trained and validated with 5385 images. Subsequently, the trained dCNN was tested on a “real-world” dataset and the performance compared to human readers. For visualization, colored probability maps of the classification were calculated using a sliding window approach. The accuracy was 98% for the training and 99% for the validation set. Confusion matrices of the “real-world” dataset for the three classes with radiological reports as ground truth yielded an accuracy of 98.51% for breast tissue, 98.63% for benign lymph nodes, and 95.96% for suspicious lymph nodes. Intraclass correlation of the dCNN and the readers was excellent (0.98), and Kappa values were nearly perfect (0.93–0.97). The colormaps successfully detected abnormal lymph nodes with excellent image quality. In this proof-of-principle study in a small patient cohort from a single institution, we found that deep convolutional networks can be trained with high accuracy and reliability to detect abnormal axillary lymph nodes on mammograms.
- 29 May 2022
- Published by MDPI AG in Diagnostics
- Vol. 12 (6) , 1347
Open AccessDetecting Abnormal Axillary Lymph Nodes on Mammograms Using a Deep Convolutional Neural Network
The purpose of this study was to determine the feasibility of a deep convolutional neural network (dCNN) to accurately detect abnormal axillary lymph nodes on mammograms. In this retrospective study, 107 mammographic images in mediolateral oblique projection from 74 patients were labeled to three classes: (1) “breast tissue”, (2) “benign lymph nodes”, and (3) “suspicious lymph nodes”. Following data preprocessing, a dCNN model was trained and validated with 5385 images. Subsequently, the trained dCNN was tested on a “real-world” dataset and the performance compared to human readers. For visualization, colored probability maps of the classification were calculated using a sliding window approach. The accuracy was 98% for the training and 99% for the validation set. Confusion matrices of the “real-world” dataset for the three classes with radiological reports as ground truth yielded an accuracy of 98.51% for breast tissue, 98.63% for benign lymph nodes, and 95.96% for suspicious lymph nodes. Intraclass correlation of the dCNN and the readers was excellent (0.98), and Kappa values were nearly perfect (0.93–0.97). The colormaps successfully detected abnormal lymph nodes with excellent image quality. In this proof-of-principle study in a small patient cohort from a single institution, we found that deep convolutional networks can be trained with high accuracy and reliability to detect abnormal axillary lymph nodes on mammograms.
- Open Access
- 11 February 2022
- Published by Springer Nature in European Radiology
- Vol. 32 (7) , 4868-4878
Fully automatic classification of automated breast ultrasound (ABUS) imaging according to BI-RADS using a deep convolutional neural network
Purpose: The aim of this study was to develop and test a post-processing technique for detection and classification of lesions according to the BI-RADS atlas in automated breast ultrasound (ABUS) based on deep convolutional neural networks (dCNNs). Methods and materials: In this retrospective study, 645 ABUS datasets from 113 patients were included; 55 patients had lesions classified as high malignancy probability. Lesions were categorized in BI-RADS 2 (no suspicion of malignancy), BI-RADS 3 (probability of malignancy < 3%), and BI-RADS 4/5 (probability of malignancy > 3%). A deep convolutional neural network was trained after data augmentation with images of lesions and normal breast tissue, and a sliding-window approach for lesion detection was implemented. The algorithm was applied to a test dataset containing 128 images and performance was compared with readings of 2 experienced radiologists. Results: Results of calculations performed on single images showed accuracy of 79.7% and AUC of 0.91 [95% CI: 0.85–0.96] in categorization according to BI-RADS. Moderate agreement between dCNN and ground truth has been achieved (κ: 0.57 [95% CI: 0.50–0.64]) what is comparable with human readers. Analysis of whole dataset improved categorization accuracy to 90.9% and AUC of 0.91 [95% CI: 0.77–1.00], while achieving almost perfect agreement with ground truth (κ: 0.82 [95% CI: 0.69–0.95]), performing on par with human readers. Furthermore, the object localization technique allowed the detection of lesion position slice-wise. Conclusions: Our results show that a dCNN can be trained to detect and distinguish lesions in ABUS according to the BI-RADS classification with similar accuracy as experienced radiologists. Key Points: • A deep convolutional neural network (dCNN) was trained for classification of ABUS lesions according to the BI-RADS atlas. • A sliding-window approach allows accurate automatic detection and classification of lesions in ABUS examinations.
- 11 February 2022
- Published by Springer Nature in European Radiology
- Vol. 32 (7) , 4868-4878
Open AccessFully automatic classification of automated breast ultrasound (ABUS) imaging according to BI-RADS using a deep convolutional neural network
Purpose: The aim of this study was to develop and test a post-processing technique for detection and classification of lesions according to the BI-RADS atlas in automated breast ultrasound (ABUS) based on deep convolutional neural networks (dCNNs). Methods and materials: In this retrospective study, 645 ABUS datasets from 113 patients were included; 55 patients had lesions classified as high malignancy probability. Lesions were categorized in BI-RADS 2 (no suspicion of malignancy), BI-RADS 3 (probability of malignancy < 3%), and BI-RADS 4/5 (probability of malignancy > 3%). A deep convolutional neural network was trained after data augmentation with images of lesions and normal breast tissue, and a sliding-window approach for lesion detection was implemented. The algorithm was applied to a test dataset containing 128 images and performance was compared with readings of 2 experienced radiologists. Results: Results of calculations performed on single images showed accuracy of 79.7% and AUC of 0.91 [95% CI: 0.85–0.96] in categorization according to BI-RADS. Moderate agreement between dCNN and ground truth has been achieved (κ: 0.57 [95% CI: 0.50–0.64]) what is comparable with human readers. Analysis of whole dataset improved categorization accuracy to 90.9% and AUC of 0.91 [95% CI: 0.77–1.00], while achieving almost perfect agreement with ground truth (κ: 0.82 [95% CI: 0.69–0.95]), performing on par with human readers. Furthermore, the object localization technique allowed the detection of lesion position slice-wise. Conclusions: Our results show that a dCNN can be trained to detect and distinguish lesions in ABUS according to the BI-RADS classification with similar accuracy as experienced radiologists. Key Points: • A deep convolutional neural network (dCNN) was trained for classification of ABUS lesions according to the BI-RADS atlas. • A sliding-window approach allows accurate automatic detection and classification of lesions in ABUS examinations.
- Open Access
- 13 January 2022
- Published by MDPI AG in Diagnostics
- Vol. 12 (1) , 181
Applied Machine Learning in Spiral Breast-CT: Can We Train a Deep Convolutional Neural Network for Automatic, Standardized and Observer Independent Classification of Breast Density?
The aim of this study was to investigate the potential of a machine learning algorithm to accurately classify parenchymal density in spiral breast-CT (BCT), using a deep convolutional neural network (dCNN). In this retrospectively designed study, 634 examinations of 317 patients were included. After image selection and preparation, 5589 images from 634 different BCT examinations were sorted by a four-level density scale, ranging from A to D, using ACR BI-RADS-like criteria. Subsequently four different dCNN models (differences in optimizer and spatial resolution) were trained (70% of data), validated (20%) and tested on a “real-world” dataset (10%). Moreover, dCNN accuracy was compared to a human readout. The overall performance of the model with lowest resolution of input data was highest, reaching an accuracy on the “real-world” dataset of 85.8%. The intra-class correlation of the dCNN and the two readers was almost perfect (0.92) and kappa values between both readers and the dCNN were substantial (0.71–0.76). Moreover, the diagnostic performance between the readers and the dCNN showed very good correspondence with an AUC of 0.89. Artificial Intelligence in the form of a dCNN can be used for standardized, observer-independent and reliable classification of parenchymal density in a BCT examination.
- 13 January 2022
- Published by MDPI AG in Diagnostics
- Vol. 12 (1) , 181
Open AccessApplied Machine Learning in Spiral Breast-CT: Can We Train a Deep Convolutional Neural Network for Automatic, Standardized and Observer Independent Classification of Breast Density?
The aim of this study was to investigate the potential of a machine learning algorithm to accurately classify parenchymal density in spiral breast-CT (BCT), using a deep convolutional neural network (dCNN). In this retrospectively designed study, 634 examinations of 317 patients were included. After image selection and preparation, 5589 images from 634 different BCT examinations were sorted by a four-level density scale, ranging from A to D, using ACR BI-RADS-like criteria. Subsequently four different dCNN models (differences in optimizer and spatial resolution) were trained (70% of data), validated (20%) and tested on a “real-world” dataset (10%). Moreover, dCNN accuracy was compared to a human readout. The overall performance of the model with lowest resolution of input data was highest, reaching an accuracy on the “real-world” dataset of 85.8%. The intra-class correlation of the dCNN and the two readers was almost perfect (0.92) and kappa values between both readers and the dCNN were substantial (0.71–0.76). Moreover, the diagnostic performance between the readers and the dCNN showed very good correspondence with an AUC of 0.89. Artificial Intelligence in the form of a dCNN can be used for standardized, observer-independent and reliable classification of parenchymal density in a BCT examination.
- Open Access
Deep learning for the standardized classification of Ki-67 in vulva carcinoma: A feasibility study