Weitao Li

Over the past two decades, the genus Phoxinus has undergone extensive taxonomic revision and many new species or mitochondrial lineages have been found in Europe. However, Asian populations of Phoxinus spp. have received less attention and have rarely been compared with their European relatives. In this study, we deciphered the 16,789-nucleotide mitochondrial genome of Phoxinus cf. phoxinus from the Heilongjiang River (HLJ) and compared it with other known mitogenomes or partial mitochondrial DNA (mtDNA) sequences of Phoxinus spp. We discovered that all known mitochondrial genomes of Phoxinus had a typical mtDNA architecture across vertebrates, but their D-loop regions varied greatly in length. A repetitive motif of ~130 bp was identified in the D-loop regions of Phoxinus spp. The unusual repetitive structure was revealed at the beginning of D-loop regions of all known mitogenomes of Phoxinus spp. The length differences of the D-loop region were attributed mainly to the number of repetitive motifs and the inserted sequences among them. However, this repetitive structure was absent in the other Far East phoxinins. This is further evidence for the notion that Far Eastern phoxinins should be divided into two genera: Phoxinus and Rhynchocypris. All mtDNA sequences (including three mitogenomes) from South Korea represent the same genetic lineage, as there were only slight differences among them. The remaining six mtDNA sequences are highly divergent and represent different lineages of the genus, as supported by partial mtDNA sequences. The updated phylogeny of genus Phoxinus suggests that there are five distinct mtDNA lineages in Asia. The Asian lineages have diverged markedly from their European relatives and should not be included with the European minnow (P. phoxinus).

Seasonal water-level fluctuations may lead to changes in river nutrients, which causes corresponding changes in the trophic structure of an aquatic food web, and finally affects the whole ecosystem. In this study, we focused on the Ganjing River, a tributary of the Yangtze River, China. Common organisms were sampled and measured for carbon and nitrogen stable isotopes in the wet and dry seasons, respectively, and the relative contributions of different food sources were combined to construct the food web, so as to realize the influence of water-level fluctuation on aquatic food web. Our results showed that basal food sources for fish consumers were endogenous carbon sources such as POM, zooplankton and zoobenthos in the dry season, while high water level exposed fish to more diverse and abundant food sources, and the contribution proportions of exogenous carbon sources (e.g., terrestrial detritus) to consumers increased in the wet season. In parallel, the abundance and species diversity of fish were higher than those in the dry season. Most fish species had relatively higher trophic levels in the dry season compared to the wet season, because the increase in fish densities led to an increase in piscivores fish. The food web was composed of planktonic and benthic food chains in the dry season. During the wet season, the planktonic food chain was dominant, followed by the herbivorous food chain, and the benthic food chain was relatively less important. Therefore, water-level fluctuation may alter the trophic linkages within fish communities, which contributed to a more complex and interconnected food web. Moreover, as we expect, the stable isotope analysis food web was broadly in line with the gut content analysis food web.

Homatula potanini is an endemic and one of ornamental fishes in the upper stream of the Yangtze River and its tributaries. However, wild populations of H. potanini declined sharply due to anthropological activity in the Jinsha River during the past decades. In present study, the complete mitochondrial DNA genome sequence of H. potanini was first determined by DNA sequencing based on the PCR fragments. The complete mitochondrial genome sequence is a circular molecule of 16,569 bp in size. It consists of 13 protein-coding genes, 22 tRNA genes, 2 rRNA genes, and a control region (D-loop). The gene nucleotide composition of H. potanini is 30.1% A, 26.9% C, 16.7% G, and 26.3% T, with a relatively high A + T content (56.4%). The results could provide useful data for studies on genetic structure and rational resource conservation in H. potanini.