Kiryn Dobbie

Myrtle rust is a very damaging disease, caused by the fungus Austropuccinia psidii, which has recently arrived in New Zealand and threatens the iconic tree species pōhutukawa (Metrosideros excelsa). Canopy-level hyperspectral and thermal images were taken repeatedly within a controlled environment, from 49 inoculated (MR treatment) and 26 uninoculated (control treatment) pōhutukawa plants. Measurements were taken prior to inoculation and six times post-inoculation over a 14-day period. Using indices extracted from these data, the objectives were to (i) identify the key thermal and narrow-band hyperspectral indices (NBHIs) associated with the pre-visual and early expression of myrtle rust and (ii) develop a classification model to detect the disease. The number of symptomatic plants increased rapidly from three plants at 3 days after inoculation (DAI) to all 49 MR plants at 8 DAI. NBHIs were most effective for pre-visual and early disease detection from 3 to 6 DAI, while thermal indices were more effective for detection of disease following symptom expression from 7 to 14 DAI. Using results compiled from an independent test dataset, model performance using the best thermal indices and NBHIs was excellent from 3 DAI to 6 DAI (F1 score 0.81–0.85; accuracy 73–80%) and outstanding from 7 to 14 DAI (F1 score 0.92–0.93; accuracy 89–91%).

Myrtle rust, caused by the fungus Austropuccinia psidii, is a serious disease, which affects many Myrtaceae species. Commercial nurseries that propagate Myrtaceae species are prone to myrtle rust and require a reliable method that allows previsual and early detection of the disease. This study uses time-series thermal imagery and visible-to-short-infrared spectroscopy measurements acquired over 10 days from 81 rose apple plants ( Syzygium jambos) that were either inoculated with myrtle rust or maintained disease-free. Using these data, the objectives were to (i) quantify the accuracy of models using thermal indices and narrowband hyperspectral indices (NBHI) for previsual and early detection of myrtle rust using data from older resistant green leaves and young susceptible red leaves and (ii) identify the most important NBHI and thermal indices for disease detection. Using predictions made on a validation dataset, models using indices derived from thermal imagery were able to perfectly (F1 score = 1.0; accuracy = 100%) distinguish control from infected plants previsually one day before symptoms appeared (1 DBS) and for all stages after early symptoms appeared. Compared with control plants, plants with myrtle rust had lower and more variable normalized canopy temperature, which was associated with higher stomatal conductance and transpiration. Using NBHI derived from green leaves, excellent previsual classification was achieved 3 DBS, 2 DBS, and 1 DBS (F1 score range = 0.89 to 0.94). The accurate characterization of myrtle rust during previsual and early stages of disease development suggests that a robust detection methodology could be developed within a nursery setting. [ ] Copyright © 2023 The Author(s). This is an open access article distributed under the CC BY 4.0 International license .

Foliage samples from Podocarpus totara with severe needle browning and needle loss in the lower part of the crown were observed in 2011 in the Gisborne region of New Zealand. A Phytophthora genus-specific test applied directly to the needles gave a strong positive result, and subsequent isolations yielded colonies of a slow-growing oomycete. Morphological examination in vitro revealed a Phytophthora species. Preliminary comparisons of the rDNA (ITS), and ras-related protein (Ypt) gene regions with international DNA sequence revealed low sequence similarity to species from the downy mildew genus Peronospora, as well as clade 3 Phytophthora species. Other studies have also demonstrated the close relationship with Peronospora. The species was given the interim designation Phytophthora taxon tōtara pending further examination. Here, we formally describe Phytophthora podocarpi sp. Nov. and its associated disease, tōtara needle blight.