Edgart Flores

The Chilean upwelling bays are highly productive ecosystems shaped by their interactions with the open ocean. Although significant knowledge exists regarding their hydrodynamic and ecological processes, the spatial dynamics of trophic transfer and heterotrophic resynthesis of organic matter remain insufficiently understood. To address these knowledge gaps, we conducted a compound-specific isotope analysis of amino acids (CSIAA) on suspended and sinking particulate organic matter from Mejillones and Antofagasta bays, two oceanographic environments characterized by contrasting hydrodynamic conditions and topographic orientations. In Mejillones Bay, the CSIAA trophic positions for metazoan (1.7 ± 0.5) and protozoan (2.3 ± 0.3) were significantly higher compared to those in Antofagasta Bay (metazoans: 1.3 ± 0.6; protozoans: 1.5 ± 0.3), highlighting protozoans as primary trophic vectors. MixSIAR analysis indicated that phytoplankton is a key source of particulate organic matter in both bays; however, Mejillones Bay exhibited a greater proportion of microbially degraded organic matter. Enhanced heterotrophic resynthesis in Mejillones Bay (ΣV: 1.9–2.5) was associated with lower oxygen levels, increased concentrations of NO₂ ⁻ , and heightened stratification of the water column. Additionally, depth-dependent variations in δ¹⁵N for phenylalanine and threonine indicated a greater solubilization of particles, which contributed to a reduction in the export of particulate organic matter (averaging 9 ± 2 mg C/m²/d). These findings underscore the critical role of the intricate interactions between the bay’s topographic features and the physical and biological processes that ultimately influence the cycling trajectories of particulate organic matter in upwelling bays.

Palaeoceanographic proxies are essential in reconstructing past climate change and accurate estimates of past conditions require reliable calibrations. The chemical signature of benthic foraminiferal calcite reflects bottom water conditions, but the effects of their microhabitat, biomineralization, metabolism, ontogeny can challenge a straightforward interpretation of past seawater conditions. In this study we compared stable isotopes of oxygen (δ18OBF) and carbon (δ13CBF) values of age-constrained benthic foraminifera from surface sediments of the Southeast Pacific (SEP) with contemporary in-situ water column values for δ18O equilibrium calcite (δ18Oeqcal) and δ13C of dissolved inorganic carbon (δ13CDIC). The ages of benthic foraminifera, based on radiocarbon and oxygen isotope stratigraphy, show a cluster of older surface sediments sites at intermediate water depths off north Chile, likely associated with sediment erosion. Epifaunal benthic foraminifera δ18OBF values reveal a 1:1 relationship with δ18Oeqcal of ambient bottom waters across the region, while infaunal foraminifera show positive δ18OBF-δ18Oeqcal offsets. Epifaunal benthic foraminifera δ13CBF values closely match ambient bottom waters δ13CDIC in most cases. In contrast, infaunal benthic foraminifera show negative δ13CBF-δ13CDIC offset. At sites shallower than 1000 m, both epifaunal and infaunal benthic foraminifera display significant positive δ13CBF-δ13CDIC offsets. This offset is likely attributed to a combination of microbiological processes occurring within the bottom and pore waters under low to intermediate oxygen conditions, influencing the carbonate pool and the inorganic carbon speciation in the SEP. This is not likely a regionally restricted phenomenon and may have broader implications for improving the reliability of δ13C- and δ18O-based proxies in palaeoceanographic studies.

Oceanic trenches are an important sink for organic matter (OM). However, little is known about how much of the OM reaching the hadal region derives from the sunlit surface ocean and other sources. We provide new insight into the OM sources in the Atacama Trench by examining the elemental and stable isotope composition of carbon and nitrogen in bulk OM throughout the entire water column and down to bathyal and hadal sediments. Moreover, we estimated the particulate organic carbon (POC) concentration and downward carbon flux. Our results, based on two‐way variance analysis, showed statistical differences in δ¹⁵N_PON between the epipelagic zone and the deep zones. However, no statistical differences in δ¹³C_POC and C:N ratio between hadalpelagic and shallower pelagic zones were found, except for δ¹³C_POC in the oxygen‐deficient zone. On the contrary, whereas the isotopic signatures of hadal sediments were distinct from those over the entire water column, they were similar to the values in bathyal sediments. Thus, our results suggest that bathyal sediments could contribute more OM to hadal sediments than the different zones of the water column. Indeed, whereas POC flux estimates derived from remote sensing data indicate that ∼16%–27% of POC could evade surface remineralization within the top 200 m and potentially be exported to depths beyond the mesopelagic region, model estimates suggest that ∼3.3% of it could reach hadal depths. Our results provide a quantitative baseline of pelagic‐benthic coupling which can aid in assessment of carbon cycling changes in future climate scenarios.

Paleotemperature histories derived from lake sediment archives provide valuable context for modern and future climate changes. Branched glycerol dialkyl glycerol tetraether (brGDGT) lipids are a valuable tool in such pursuits due to their empirical correlation with temperature and near ubiquity in nature. However, the relative contributions of terrestrial and lacustrine sources of brGDGTs to lake sediments is site‐dependent and difficult to constrain. Here, we explored the potential for intact brGDGTs—the complete lipids with polar head groups (HGs) still attached—to provide insight into the sources of brGDGTs on the landscape and their contributions to the sedimentary record in a set of Arctic lakes. We measured core and intact brGDGTs in soils, surface and downcore sediments, water filtrates, and sediment traps across five lake catchments in the Eastern Canadian Arctic, with an emphasis on Lake Qaupat (QPT), Baffin Island. Soils were dominated by brGDGTs with a monoglycosyl (1G) HG, while lacustrine samples contained more phosphohexose (PH) brGDGTs, providing evidence for in situ brGDGT production in both settings. Core‐ and PH‐brGDGT‐IIIa were more abundant in sediments than in the soils or water column, implying an additional post‐depositional source of brGDGTs. A hierarchical clustering analysis indicated that core brGDGTs in Lake QPT sediments were largely lacustrine in origin, while 1G‐brGDGTs were primarily soil‐derived. Additionally, we found evidence for preservation of intact brGDGTs—especially 1G‐brGDGTs—downcore on thousand‐year timespans, though in situ production deeper in the sediment column cannot be ruled out. Finally, we explored the possibility of reconstructing 1G‐brGDGT‐derived soil temperatures and core‐brGDGT‐derived lake temperatures in tandem from sedimentary archives.

Elevated organic matter (OM) concentrations are found in hadal surface sediments relative to the surrounding abyssal seabed. However, the origin of this biological material remains elusive. Here, we report on the composition and distribution of cellular membrane intact polar lipids (IPLs) extracted from surface sediments around the deepest points of the Atacama Trench and adjacent bathyal margin to assess and constrain the sources of labile OM in the hadal seabed. Multiscale bootstrap resampling of IPLs' structural diversity and abundance indicates distinct lipid signatures in the sediments of the Atacama Trench that are more closely related to those found in bathyal sediments than to those previously reported for the upper ocean water column in the region. Whereas the overall number of unique IPL structures in hadal sediments contributes a small fraction of the total IPL pool, we also report a high contribution of phospholipids with mono- and di-unsaturated fatty acids that are not associated with photoautotrophic sources and that resemble traits of physiological adaptation to high pressure and low temperature. Our results indicate that IPLs in hadal sediments of the Atacama Trench predominantly derive from in situ microbial production and biomass, whereas the export of the most labile lipid component of the OM pool from the euphotic zone and the overlying oxygen minimum zone is neglectable. While other OM sources such as the downslope and/or lateral transport of labile OM cannot be ruled out and remain to be studied, they are likely less important in view of the lability of ester-bond IPLs. Our results contribute to the understanding of the mechanisms that control the delivery of labile OM to this extreme deep-sea ecosystem. Furthermore, they provide insights into some potential physiological adaptation of the in situ microbial community to high pressure and low temperature through lipid remodeling.

Elevated organic matter (OM) concentrations are found in hadal surface sediments relative to the surrounding abyssal seabed. However, the origin of the biological material remains elusive. Here, we report the composition and distribution of cellular membrane intact polar lipids (IPLs) extracted from surface sediments around the deepest points of the Atacama Trench and adjacent bathyal margin to assess and constrain the sources of labile OM in the hadal seabed. Multiscale bootstrap resampling of IPLs’ structural diversity and abundance indicates distinct lipid signatures in the sediments of the Atacama Trench that are more closely related to those found in bathyal sediments than to those previously reported for the upper ocean water column in the region. While the overall number of unique IPL structures in hadal sediments is limited and they contribute a small fraction of the total IPL pool, they include a high contribution of phospholipids with mono- and di-unsaturated fatty acids that are not associated with photoautotrophic sources. The diversity of IPLs in hadal sediments of the Atacama Trench suggests the presence of in situ microbial production and biomass that resembles traits of physiological adaptation to high pressure and low temperature, and/or the transport of labile OM from shallower sediment. We argue that the export of the most labile lipid component of the OM pool from the euphotic zone and the overlying oxygen minimum zone into the hadal sediments is neglectable. Our results contribute to the understanding of the mechanisms that control the delivery of labile OM to this extreme deep-sea ecosystem. Furthermore, they provide insights into some potential physiological adaptation of the in situ microbial community to high pressure and low temperature through lipid remodeling.

Elevated concentrations of organic matter are found in sediments of hadal trenches relative to those found in the abyssal seabed, but the origin of such biological material remains elusive. Here, we report the composition and distribution of cell membrane intact polar lipids (IPLs) in surface sediments around the deepest points of the Atacama Trench and adjacent bathyal depths to assess and constrain the sources of labile organic matter in the hadal seabed. Multiscale bootstrap resampling of IPLs’ structural diversity and abundance indicates distinct lipid signatures in the sediments of the Atacama Trench that are more closely related to those found in bathyal sediments than to those previously reported for the upper ocean water column in the region. While the overall number of unique IPL structures in hadal sediments is limited and they contribute a small fraction of the total IPL pool, they include a high contribution of phospholipids with mono- and di-unsaturated fatty acids that are not associated with photoautotrophic sources. The diversity of labile IPLs in hadal sediments of the Atacama Trench suggests the presence of in situ microbial production and biomass that resembles traits of physiological adaptation to high pressure and low temperature, and/or the transport of labile organic matter from shallower sediment. We argue that the export of the most labile lipid component of the organic matter pool from the euphotic zone and the overlying oxygen minimum zone into the hadal sediments is neglectable. Our results contribute to the understanding of the mechanisms that control the delivery of labile organic matter to this extreme deep-sea ecosystem, whereas they provide insights into some potential physiological adaptation of the in situ microbial community to high pressure and low temperature through lipid remodeling.