Qiu Zhang
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Qiu Zhang has a total of 42 co-authors. Here are the top co-authors by number of shared publications:
- Hugh O’ Neill
Oak Ridge National Laboratory
2 shared publications - Alan Hicks
Oak Ridge National Laboratory
1 shared publication - Alexander I. Kolesnikov
Oak Ridge National Laboratory
1 shared publication - Andrzej Joachimiak
BERlight and Structural Biology Center, X-ray Science Division, Advanced Photon Source, Argonne National Laboratory, Lemont, Illinois, USA
1 shared publication - Audrey Labbe
Oak Ridge National Laboratory
1 shared publication - Babak Andi
Center for BioMolecular Structure, National Synchrotron Light Source II, Brookhaven National Laboratory, Upton, USA
1 shared publication
Latest Publications
- Open Access
Characterization of Liquid-Liquid Phase Separation of Companion of Cellulose Synthases under Stress Mimicking Conditions
Companion of Cellulose Synthase (CC), has previously been shown to sustain cellulose synthesis during salt stress. However, the role of CCs in this process is not well-understood. In this study, we show that the intrinsically disordered N-terminal domain of Arabidopsis CC1 (CC1NTD) can undergo liquid-liquid phase separation (LLPS) under defined reducing conditions in the presence of trimethylamine N-oxide (TMAO), a naturally occurring plant stress osmolyte. The observed biomolecular condensates are enriched in CC1NTD and display liquid-like behavior, including spherical morphology, fusion, and dynamic exchange with the surrounding solution. We further show that TMAO compacts CC1NTD without inducing folding, that CC1NTD condensates recruit tubulin and accelerate microtubule polymerization while retaining dynamic properties. Additionally, we also studied the intrinsically disordered N-terminal domain of CC2, a closely related paralog to CC1. We found that CC2NTD remains disordered but does not phase separate independently under the same experimental conditions. However, it does partition into CC1NTD condensates. Together, these results define a condition-dependent condensate state for CC1NTD and link that state to tubulin-related function. Finally, we propose a novel mechanism for the formation and maintenance of stress-associated cellulose synthase compartments driven by LLPS of the disordered regions of CSC and accessory proteins.
Open AccessCharacterization of Liquid-Liquid Phase Separation of Companion of Cellulose Synthases under Stress Mimicking Conditions
Companion of Cellulose Synthase (CC), has previously been shown to sustain cellulose synthesis during salt stress. However, the role of CCs in this process is not well-understood. In this study, we show that the intrinsically disordered N-terminal domain of Arabidopsis CC1 (CC1NTD) can undergo liquid-liquid phase separation (LLPS) under defined reducing conditions in the presence of trimethylamine N-oxide (TMAO), a naturally occurring plant stress osmolyte. The observed biomolecular condensates are enriched in CC1NTD and display liquid-like behavior, including spherical morphology, fusion, and dynamic exchange with the surrounding solution. We further show that TMAO compacts CC1NTD without inducing folding, that CC1NTD condensates recruit tubulin and accelerate microtubule polymerization while retaining dynamic properties. Additionally, we also studied the intrinsically disordered N-terminal domain of CC2, a closely related paralog to CC1. We found that CC2NTD remains disordered but does not phase separate independently under the same experimental conditions. However, it does partition into CC1NTD condensates. Together, these results define a condition-dependent condensate state for CC1NTD and link that state to tubulin-related function. Finally, we propose a novel mechanism for the formation and maintenance of stress-associated cellulose synthase compartments driven by LLPS of the disordered regions of CSC and accessory proteins.
- Open Access
- 21 July 2022
- Published by Springer Nature in Research Square
Potent and Selective Covalent Inhibition of the Papain-like Protease from SARS-CoV-2
Direct-acting antivirals are needed to combat coronavirus disease 2019 (COVID-19), which is caused by severe acute respiratory syndrome-coronavirus-2 (SARS-CoV-2). The papain-like protease (PLpro) domain of Nsp3 from SARS-CoV-2 is essential for viral replication. In addition, PLpro dysregulates the host immune response by cleaving ubiquitin and interferon-stimulated gene 15 protein (ISG15) from host proteins. As a result, PLpro is a promising target for inhibition by small-molecule therapeutics. Here we have designed a series of covalent inhibitors by introducing a peptidomimetic linker and reactive electrophile onto analogs of the noncovalent PLpro inhibitor GRL0617. The most potent compound inhibited PLpro with kinact/KI = 10,000 M− 1 s− 1, achieved sub-µM EC50 values against three SARS-CoV-2 variants in mammalian cell lines, and did not inhibit a panel of human deubiquitinases at > 30 µM concentrations of inhibitor. An X-ray co-crystal structure of the compound bound to PLpro validated our design strategy and established the molecular basis for covalent inhibition and selectivity against structurally similar human DUBs. These findings present an opportunity for further development of covalent PLpro inhibitors.
- 21 July 2022
- Published by Springer Nature in Research Square
Open AccessPotent and Selective Covalent Inhibition of the Papain-like Protease from SARS-CoV-2
Direct-acting antivirals are needed to combat coronavirus disease 2019 (COVID-19), which is caused by severe acute respiratory syndrome-coronavirus-2 (SARS-CoV-2). The papain-like protease (PLpro) domain of Nsp3 from SARS-CoV-2 is essential for viral replication. In addition, PLpro dysregulates the host immune response by cleaving ubiquitin and interferon-stimulated gene 15 protein (ISG15) from host proteins. As a result, PLpro is a promising target for inhibition by small-molecule therapeutics. Here we have designed a series of covalent inhibitors by introducing a peptidomimetic linker and reactive electrophile onto analogs of the noncovalent PLpro inhibitor GRL0617. The most potent compound inhibited PLpro with kinact/KI = 10,000 M− 1 s− 1, achieved sub-µM EC50 values against three SARS-CoV-2 variants in mammalian cell lines, and did not inhibit a panel of human deubiquitinases at > 30 µM concentrations of inhibitor. An X-ray co-crystal structure of the compound bound to PLpro validated our design strategy and established the molecular basis for covalent inhibition and selectivity against structurally similar human DUBs. These findings present an opportunity for further development of covalent PLpro inhibitors.
- Open Access
- 17 December 2021
- Published by Elsevier in The Innovation
- Vol. 3 (1) , 100199
Experimental mapping of short-wavelength phonons in proteins
- 17 December 2021
- Published by Elsevier in The Innovation
- Vol. 3 (1) , 100199
Open AccessExperimental mapping of short-wavelength phonons in proteins