Shujun Nie
Research Subjects
Research Interests
Shujun Nie has a total of 25 co-authors. Here are the top co-authors by number of shared publications:
- Bai-Chen Wang
State Key Laboratory of Forage Breeding-by-Design and Utilization, Key Laboratory of Photobiology, Institute of Botany, Chinese Academy of Sciences, Beijing, China
1 shared publication - Boyan Liu
State Key Laboratory of Crop Biology, College of Life Sciences, Shandong Agricultural University, Taian 271018, China
1 shared publication Gang Duan
Chongqing Key Laboratory of Highly Pathogenic Microbes, Chongqing Research Center for Disease Prevention and Public Health, Chongqing Center for Disease Control and Prevention (Chongqing Academy of Preventive Medicine)
1 shared publication- Gaoke Li
Crops Research Institute, Guangdong Academy of Agricultural Sciences, Guangdong Provincial Key Laboratory of Crop Genetic Improvement, Guangzhou 510640, China
1 shared publication - Guangtang Pan
State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Key Laboratory of Biology and Genetic Improvement of Maize in Southwest Region of Ministry of Agriculture, Maize Research Institute, Sichuan Agricultural University, Chengdu 611130, China
1 shared publication - Haiping Ding
Hubei Hongshan Laboratory, National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, China
1 shared publication
Latest Publications
- Open Access
- 2 November 2026
- Published by Frontiers Media SA in Frontiers in Microbiology
- Vol. 17, 1963160
Growth/toxin-producing temperatures and comprehensive genomic dissection of two toxigenic Burkholderia gladioli pv. cocovenenans strains isolated from dried Auricularia auricula
The foodborne pathogen Burkholderia gladioli pv. cocovenenans ( B. cocovenenans ) produces the lethal mitochondrial toxin bongkrekic acid (BA). To more accurately assess the toxin production levels of toxigenic strains, it is necessary to further optimize the culture conditions used during laboratory detection procedures. Here, we characterized the temperature-dependent growth and BA production of two BA-producing B. cocovenenans strains isolated from commercially available dried Auricularia auricula ( A. auricula ) in China, and examined their genomic relationships to previously reported strains. Across the discrete temperatures tested, both isolates showed the highest biomass at 31 °C and the highest measured BA levels at 37 °C, respectively. These observations are specific to the two isolates and the experimental conditions used; they should not be interpreted as species-wide temperature optima. Whole-genome sequencing, phylogenetic analysis, and average nucleotide identity (ANI) analysis showed that the isolates were closely related to outbreak-associated strains, including Co14, and both carried a bon biosynthetic gene cluster. However, BA levels in the original dry products and bacterial growth or BA production after rehydration were not assessed in this study. The findings therefore support further investigation of temperature-dependent BA production and the occurrence of toxigenic B. gladioli pv. cocovenenans in dried edible fungi, but do not by themselves establish the magnitude of consumer risk or demonstrate that current surveillance procedures underestimate it.
- 2 November 2026
- Published by Frontiers Media SA in Frontiers in Microbiology
- Vol. 17, 1963160
Open AccessGrowth/toxin-producing temperatures and comprehensive genomic dissection of two toxigenic Burkholderia gladioli pv. cocovenenans strains isolated from dried Auricularia auricula
The foodborne pathogen Burkholderia gladioli pv. cocovenenans ( B. cocovenenans ) produces the lethal mitochondrial toxin bongkrekic acid (BA). To more accurately assess the toxin production levels of toxigenic strains, it is necessary to further optimize the culture conditions used during laboratory detection procedures. Here, we characterized the temperature-dependent growth and BA production of two BA-producing B. cocovenenans strains isolated from commercially available dried Auricularia auricula ( A. auricula ) in China, and examined their genomic relationships to previously reported strains. Across the discrete temperatures tested, both isolates showed the highest biomass at 31 °C and the highest measured BA levels at 37 °C, respectively. These observations are specific to the two isolates and the experimental conditions used; they should not be interpreted as species-wide temperature optima. Whole-genome sequencing, phylogenetic analysis, and average nucleotide identity (ANI) analysis showed that the isolates were closely related to outbreak-associated strains, including Co14, and both carried a bon biosynthetic gene cluster. However, BA levels in the original dry products and bacterial growth or BA production after rehydration were not assessed in this study. The findings therefore support further investigation of temperature-dependent BA production and the occurrence of toxigenic B. gladioli pv. cocovenenans in dried edible fungi, but do not by themselves establish the magnitude of consumer risk or demonstrate that current surveillance procedures underestimate it.
- Open Access
- 12 January 2022
- Published by MDPI AG in International Journal of Molecular Sciences
- Vol. 23 (2) , 814
Identification and Fine Mapping of the Recessive Gene BK-5, Which Affects Cell Wall Biosynthesis and Plant Brittleness in Maize
The cellulose of the plant cell wall indirectly affects the cell shape and straw stiffness of the plant. Here, the novel brittleness mutant brittle stalk-5 (bk-5) of the maize inbred line RP125 was characterized. We found that the mutant displayed brittleness of the stalk and even the whole plant, and that the brittleness phenotype existed during the whole growth period from germination to senescence. The compressive strength was reduced, the cell wall was thinner, and the cellulose content was decreased compared to that of the wild type. Genetic analysis and map-based cloning indicated that bk-5 was controlled by a single recessive nuclear gene and that it was located in a 90.2-Kb region on chromosome 3 that covers three open reading frames (ORFs). Sequence analysis revealed a single non-synonymous missense mutation, T-to-A, in the last exon of Zm00001d043477 (B73: version 4, named BK-5) that caused the 951th amino acid to go from leucine to histidine. BK-5 encodes a cellulose synthase catalytic subunit (CesA), which is involved with cellulose synthesis. We found that BK-5 was constitutively expressed in all tissues of the germinating stage and silking stage, and highly expressed in the leaf, auricula, and root of the silking stage and the 2-cm root and bud of the germinating stage. We found that BK-5 mainly localized to the Golgi apparatus, suggesting that the protein might move to the plasma membrane with the aid of Golgi in maize. According to RNA-seq data, bk-5 had more downregulated genes than upregulated genes, and many of the downregulated genes were enzymes and transcription factors related to cellulose, hemicellulose, and lignin biosynthesis of the secondary cell wall. The other differentially expressed genes were related to metabolic and cellular processes, and were significantly enriched in hormone signal transduction, starch and sucrose metabolism, and the plant–pathogen interaction pathway. Taken together, we propose that the mutation of gene BK-5 causes the brittle stalk phenotype and provides important insights into the regulatory mechanism of cellulose biosynthesis and cell wall development in maize.
- 12 January 2022
- Published by MDPI AG in International Journal of Molecular Sciences
- Vol. 23 (2) , 814
Open AccessIdentification and Fine Mapping of the Recessive Gene BK-5, Which Affects Cell Wall Biosynthesis and Plant Brittleness in Maize
The cellulose of the plant cell wall indirectly affects the cell shape and straw stiffness of the plant. Here, the novel brittleness mutant brittle stalk-5 (bk-5) of the maize inbred line RP125 was characterized. We found that the mutant displayed brittleness of the stalk and even the whole plant, and that the brittleness phenotype existed during the whole growth period from germination to senescence. The compressive strength was reduced, the cell wall was thinner, and the cellulose content was decreased compared to that of the wild type. Genetic analysis and map-based cloning indicated that bk-5 was controlled by a single recessive nuclear gene and that it was located in a 90.2-Kb region on chromosome 3 that covers three open reading frames (ORFs). Sequence analysis revealed a single non-synonymous missense mutation, T-to-A, in the last exon of Zm00001d043477 (B73: version 4, named BK-5) that caused the 951th amino acid to go from leucine to histidine. BK-5 encodes a cellulose synthase catalytic subunit (CesA), which is involved with cellulose synthesis. We found that BK-5 was constitutively expressed in all tissues of the germinating stage and silking stage, and highly expressed in the leaf, auricula, and root of the silking stage and the 2-cm root and bud of the germinating stage. We found that BK-5 mainly localized to the Golgi apparatus, suggesting that the protein might move to the plasma membrane with the aid of Golgi in maize. According to RNA-seq data, bk-5 had more downregulated genes than upregulated genes, and many of the downregulated genes were enzymes and transcription factors related to cellulose, hemicellulose, and lignin biosynthesis of the secondary cell wall. The other differentially expressed genes were related to metabolic and cellular processes, and were significantly enriched in hormone signal transduction, starch and sucrose metabolism, and the plant–pathogen interaction pathway. Taken together, we propose that the mutation of gene BK-5 causes the brittle stalk phenotype and provides important insights into the regulatory mechanism of cellulose biosynthesis and cell wall development in maize.