Current Organizations / Institutes

The organizations/institutes from the scholar's latest article


Abdullah Alfaifi has a total of 41 co-authors. Here are the top co-authors by number of shared publications:


Latest Publications

  • Zingerone as a Promising Natural Inhibitor of EGFR in Breast Cancer: Integrative Approaches Combining Network Pharmacology, Molecular Docking, Dynamics Simulation, DFT, and ADMET Profiling

    by Rashedul Islam, Abdullah Alfaifi, Khadijah Abdullah Alfaifi, Amjed Saeed Mahzary, Alaa H. Habib, Misbahuddin Rafeeq, Amro Ahmed Zalah, Abdulrahman Hadi Masmali, Ehab M. M. Ali, Imran Kazmi

    Breast cancer (BC) is the leading cause of mortality from malignancy in women, and a definitive cure is still sought. Therefore, it is imperative to develop effective therapies to combat this deadly disease. This research addresses this need by through comprehensive network pharmacology and in silico approaches to investigate the anticancer activity of zingerone. The top 10 drug‐disease associated gene targets were identified based on GO and KEGG analyses. Epidermal growth factor receptor (EGFR) was considered a core gene associated with BC using PPI mapping. The EGFR‐ZinG complex exhibited the strongest affinity, with a molecular docking score of −6.4 kcal/mol. Further analysis of the pharmacokinetic properties indicated that ZinG did not breach the Lipinski Rule of Five, confirming its drug‐like properties. The clinical relevance of the core targets was assessed using the GEPIA, HPA, TIMER, and cBioPortal databases. MD simulation during a 100 ns period, coupled with the determination of RMSD, RMSF, and R g, indicated steady complex formation. Principal component analysis also revealed that the ZinG‐EGFR complex formed a tight structure. Overall, these findings suggest that ZinG may be a promising drug candidate for BC by targeting an EGFR‐centric signaling pathway and warrant further clinical research.

  • Open Access

    Advancements in B‐Cell Non‐Hodgkin’s Lymphoma: From Signaling Pathways to Targeted Therapies

    by Abdullah Alfaifi, Salem Bahashwan, Mohammed Alsaadi, Ali H. Ageel, Hamzah H. Ahmed, Kaneez Fatima, Hafiz Malhan, Ishtiaq Qadri, Hussein Almehdar

    Lymphoma is the sixth most prevalent cancer globally. Non-Hodgkin’s lymphomas are the majority group of lymphomas, with B cells accounting for approximately 95% of these lymphomas. A key feature of B-cell lymphoma is the functional perturbations of essential biological pathways caused by genetic aberrations. These lead to atypical gene expression, providing cells with a selective growth advantage. Molecular analysis reveals that each lymphoma subtype has unique molecular mutations, which pose challenges in disease management and treatment. Substantial efforts over the last decade have led to the integration of this information into clinical applications, resulting in crucial insights into clinical diagnosis and targeted therapies. However, with the growing need for more effective medication development, we anticipate a deeper understanding of signaling pathways and their interactions to emerge. This review aims to demonstrate how the BCR, specific signaling pathways like PI3K/AKT/mTOR, NF-kB, and JAK/STAT are diverse in common types of B-cell lymphoma. Furthermore, it offers a detailed examination of each pathway and a synopsis of the approved or in-development targeted therapies. In conclusion, finding the activated signaling pathways is crucial for developing effective treatment plans to improve the prognosis of patients with relapsed or refractory lymphoma.


  • Open Access

    Metabolomics: A New Era in the Diagnosis or Prognosis of B-Cell Non-Hodgkin’s Lymphoma

    by Abdullah Alfaifi, Mohammed Y. Refai, Mohammed Alsaadi, Salem Bahashwan, Hafiz Malhan, Waiel Al-Kahiry, Enas Dammag, Ageel Ageel, Amjed Mahzary, Raed Albiheyri, et al.

    A wide range of histological as well as clinical properties are exhibited by B-cell non-Hodgkin’s lymphomas. These properties could make the diagnostics process complicated. The diagnosis of lymphomas at an initial stage is essential because early remedial actions taken against destructive subtypes are commonly deliberated as successful and restorative. Therefore, better protective action is needed to improve the condition of those patients who are extensively affected by cancer when diagnosed for the first time. The development of new and efficient methods for early detection of cancer has become crucial nowadays. Biomarkers are urgently needed for diagnosing B-cell non-Hodgkin’s lymphoma and assessing the severity of the disease and its prognosis. New possibilities are now open for diagnosing cancer with the help of metabolomics. The study of all the metabolites synthesised in the human body is called “metabolomics.” A patient’s phenotype is directly linked with metabolomics, which can help in providing some clinically beneficial biomarkers and is applied in the diagnostics of B-cell non-Hodgkin’s lymphoma. In cancer research, it can analyse the cancerous metabolome to identify the metabolic biomarkers. This review provides an understanding of B-cell non-Hodgkin’s lymphoma metabolism and its applications in medical diagnostics. A description of the workflow based on metabolomics is also provided, along with the benefits and drawbacks of various techniques. The use of predictive metabolic biomarkers for the diagnosis and prognosis of B-cell non-Hodgkin’s lymphoma is also explored. Thus, we can say that abnormalities related to metabolic processes can occur in a vast range of B-cell non-Hodgkin’s lymphomas. The metabolic biomarkers could only be discovered and identified as innovative therapeutic objects if we explored and researched them. In the near future, the innovations involving metabolomics could prove fruitful for predicting outcomes and bringing out novel remedial approaches.


  • Open Access

    Metabolic Biomarkers in B-Cell Lymphomas for Early Diagnosis and Prediction, as Well as Their Influence on Prognosis and Treatment

    by Abdullah Alfaifi, Salem Bahashwan, Mohammed Alsaadi, Hafiz Malhan, Aqeel Aqeel, Waiel Al-Kahiry, Hussein Almehdar, Ishtiaq Qadri

    B-cell lymphomas exhibit a vast variety of clinical and histological characteristics that might complicate the diagnosis. Timely diagnosis is crucial, as treatments for aggressive subtypes are considered successful and frequently curative, whereas indolent B-cell lymphomas are incurable and often need several therapies. The purpose of this review is to explore the current advancements achieved in B-cell lymphomas metabolism and how these indicators help to early detect metabolic changes in B-cell lymphomas and the use of predictive biological markers in refractory or relapsed disease. Since the year 1920, the Warburg effect has been known as an integral part of metabolic reprogramming. Compared to normal cells, cancerous cells require more glucose. These cancer cells undergo aerobic glycolysis instead of oxidative phosphorylation to metabolize glucose and form lactate as an end product. With the help of these metabolic alterations, a novel biomass is generated by the formation of various precursors. An aggressive metabolic phenotype is an aerobic glycolysis that has the advantage of producing high-rate ATP and preparing the biomass for the amino acid, as well as fatty acid, synthesis needed for a rapid proliferation of cells, while aerobic glycolysis is commonly thought to be the dominant metabolism in cancer cells. Later on, many metabolic biomarkers, such as increased levels of lactate dehydrogenase (LDH), plasma lactate, and deficiency of thiamine in B-cell lymphoma patients, were discovered. Various kinds of molecules can be used as biomarkers, such as genes, proteins, or hormones, because they all refer to body health. Here, we focus only on significant metabolic biomarkers in B-cell lymphomas. In conclusion, many metabolic biomarkers have been shown to have clinical validity, but many others have not been subjected to extensive testing to demonstrate their clinical usefulness in B-cell lymphoma. Furthermore, they play an essential role in the discovery of new therapeutic targets.


  • Open Access

    Assessment of Using the Syndromic Approach in Managing Patients With Sexually Transmitted Diseases Among the National Guard Primary Health Care Physicians, Jeddah City, Saudi Arabia

    by Hani S. Almugti, Ruqaiyah N. Al Hakeem, Ahmed M. Alghamdi, Sarah A Aldamen, Abdullah A Alfaifi, Salam Algharbi, Mohammed A Al-Shehri, Essa M. Atafi, Abdullah Al Rashidi, Norah Alturki, et al.

    Sexually transmitted infections (STIs) include a group of clinical syndromes that can be transmitted mainly through sexual activity. Using STIs’ syndromic approach for diagnosis and management is widely recommended to control and reduce the burden of these transmissible diseases. The objective of this article is to assess the knowledge and practice of physicians concerning syndromic management of STIs in National Guard Primary Health Care (PHC) centers in Jeddah city, Saudi Arabia. This observational study was conducted at the National Guard PHC centers in Jeddah City, Saudi Arabia. An interview-administered questionnaire was designed. Fifty physicians have met the inclusion criteria, and all of them were included in the present study. Of the study population, 47 PHC physicians (response rate was 94%) were interviewed and the questionnaire was completed. Overall, the physicians' knowledge was different from one syndrome to another; it was highest for urethral discharge (72%) and lowest for vaginal discharge in pregnant women (21%). During the last 10 days, the physicians in the present study reported that two-thirds of their cases of STI were urethral discharge cases. However, during the previous 10 days, the practice assessment revealed that most physicians (76%) were correctly prescribed the medications as indicated by specific patients' syndromes. Syndromic management is essential guidance to control and reduce the burden of STIs. Overall knowledge and practice of physicians were different from one syndrome to another. There is a need to design continuing medical education programs targeting PHC physicians to be clinically and culturally competent against socially sensitive diseases like STIs.