Current Organizations / Institutes

The organizations/institutes from the scholar's latest article


Eli Varon has a total of 36 co-authors. Here are the top co-authors by number of shared publications:


Latest Publications

  • Magnetic Microfluidics with AI-Based Cell Level Quantification of Nanoparticle Delivery

    by Eli Varon, Oz Mualem, Reut Plen Gueta, Martina Giannaccini, Vittoria Raffa, Orit Shefi

    Targeted therapeutic delivery to sites of nerve injury remains a major challenge in regenerative medicine, where efficient treatment requires maximizing local drug concentration while minimizing off-target effects. Recently, microfluidic platforms have proven to be powerful tools for modeling physiological flow and drug delivery. Here, we used iron oxide nanoparticles conjugated to nerve growth factor (NGF-MNPs) and applied an external magnetic field to defined target regions within a microfluidic device. Using live imaging, we first visualize the flow of fluorescent MNPs within the device to track particle displacement under magnetic stimulation. The resulting shift in particle trajectories, designed to mimic physiological flow conditions, was quantified to assess the influence of the magnetic field on nanoparticle behavior. We next quantified the accumulation of MNP-associated fluorescent puncta at a single-cell resolution utilizing state-of-the-art artificial intelligence and image processing approaches for segmentation, enabling optimization of nanoparticle internalization per cell as a function of external magnetic field application and nanoparticle size. We also demonstrated that PC12 cells exposed to NGF-MNPs within the microfluidic device exhibited efficient growth and differentiation. Finally, our results showed that a strong magnetic field increased MNP internalization by 116% relative to conditions without external magnetic stimulation, highlighting the efficiency of magnetically guided drug delivery. In all, these findings establish a magnetic microfluidic delivery platform approach for guiding therapeutic nanoparticles under physiologically relevant flow conditions. This integrated platform approach provides a quantitative foundation for future neurorepair systems and supports the development of magnetically guided regenerative drug delivery technologies.

  • Open Access

    An Engineered Nanocomplex with Photodynamic and Photothermal Synergistic Properties for Cancer Treatment

    by Eli Varon, Gaddi Blumrosen, Moshe Sinvani, Elina Haimov, Shlomi Polani, Michal Natan, Irit Shoval, Avi Jacob, Ayelet Atkins, David Zitoun, et al.

    Photodynamic therapy (PDT) and photothermal therapy (PTT) are promising therapeutic methods for cancer treatment; however, as single modality therapies, either PDT or PTT is still limited in its success rate. A dual application of both PDT and PTT, in a combined protocol, has gained immense interest. In this study, gold nanoparticles (AuNPs) were conjugated with a PDT agent, meso-tetrahydroxyphenylchlorin (mTHPC) photosensitizer, designed as nanotherapeutic agents that can activate a dual photodynamic/photothermal therapy in SH-SY5Y human neuroblastoma cells. The AuNP-mTHPC complex is biocompatible, soluble, and photostable. PDT efficiency is high because of immediate reactive oxygen species (ROS) production upon mTHPC activation by the 650-nm laser, which decreased mitochondrial membrane potential (∆ψm). Likewise, the AuNP-mTHPC complex is used as a photoabsorbing (PTA) agent for PTT, due to efficient plasmon absorption and excellent photothermal conversion characteristics of AuNPs under laser irradiation at 532 nm. Under the laser irradiation of a PDT/PTT combination, a twofold phototoxicity outcome follows, compared to PDT-only or PTT-only treatment. This indicates that PDT and PTT have synergistic effects together as a combined therapeutic method. Our study aimed at applying the AuNP-mTHPC approach as a potential treatment of cancer in the biomedical field.


  • Specific, Sensitive, and Quantitative Detection of HER-2 mRNA Breast Cancer Marker by Fluorescent Light-Up Hybridization Probes

    by Abed Saady, Melissa Wojtyniak, Eli Varon, Verena Boettner, Noa Kinor, Yaron Shav-Tal, Christian Ducho, Bilha Fischer

    Currently, there is demand for fluorescent oligonucleotide probes for diagnostic purposes. To address this necessity, we developed nucleosides containing a flexible spacer with an intercalating moiety at its end (NIC molecules). The intercalator is based on 4-hydroxybenzylidene imidazolinone (HBI), found in the Green Fluorescent Protein. We synthesized 20-mer oligonucleotides, ON1-ON4, incorporating the DMTr phosphorodiamidite monomer of dUHBI, 2, and the corresponding dUDFHBI, 5b, monomer. ON1-ON4 target the HER-2 mRNA breast cancer marker for the diagnostics of breast cancer subtype. Hybridization of ON1/ON2 and ON3/ON4 with complementary 2’-OMe-RNA resulted in emission at 462 and 481 nm, respectively, and up to 46-fold increase in fluorescence intensity. CD and 19F-NMR data indicated that HBI and DFHBI fluorophores bind as intercalators and stabilize the duplexes (up to ∆Tm 6°C). Furthermore, addition of ON1-ON4 to total RNA extracted from cancer cells that overexpress HER-2 mRNA, resulted in a significant fluorescence enhancement of ON3 and ON4. The latter sensitively detected low concentrations of the target mRNA (at total RNA 30 ng/µL). These probes were photostable for 200 min. Using a dilution curve, we quantified the number of HER-2 transcripts in a cell. In conclusion, ON3 and ON4 are promising diagnostic probes for an easy, instantaneous, specific, and sensitive detection of levels of oncogenes. Importantly, the NIC concept, demonstrated here for diagnostics of breast cancer, is universal and may be applied not only in a clinical setting but also for the detection of any RNA.


  • Open Access

    CD-tagging-MS2: detecting allelic expression of endogenous mRNAs and their protein products in single cells

    by Jonathan Sheinberger, Hodaya Hochberg, Erez Lavi, Itamar Kanter, Shira Avivi, Gita Reinitz, Avital Schwed, Yuval Aizler, Eli Varon, Noa Kinor, et al.

    Discriminating between the mRNA and protein outputs of each of the alleles of an endogenous gene in intact cells, is a difficult task. To examine endogenous transcripts originating from a specific allele, we applied Central Dogma tagging (CD-tagging), which is based on a tag insertion into an endogenous gene by creation of a new exon. Previously, CD-tagging was used to tag endogenous proteins. Here we developed a CD-tagging-MS2 approach in which two tags were inserted in tandem; a fluorescent protein tag in conjunction with the mRNA MS2 tag used for tagging mRNAs in cells. A cell clone library of CD-tagged-MS2 genes was generated, and protein and mRNA distributions were examined and characterized in single cells. Taking advantage of having one allele tagged, we demonstrate how the transcriptional activity of all alleles, tagged and untagged, can be identified using single molecule RNA fluorescence in situ hybridization (smFISH). Allele-specific mRNA expression and localization were quantified under normal and stress conditions. The latter generate cytoplasmic stress granules (SGs) that can store mRNAs, and the distribution of the mRNAs within and outside of the SGs was measured. Altogether, CD-tagging-MS2 is a robust and inexpensive approach for direct simultaneous detection of an endogenous mRNA and its translated protein product in the same cell.