RYRose Yu

Rose Yu

*This is an algorithmically generated author record based on publicly available information.

Current Organizations / Institutes

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Previous Organizations / Institutes

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Rose Yu has a total of 406 co-authors. Here are the top co-authors by number of shared publications:


Latest Publications

  • Open Access

    A Multi-Sensor, Multi-Movement Exploratory Study of Motion Tape Strain Data for Low Back Pain Classification

    by Pratham Yashwante, Sara P. Gombatto, Yasmín Velázquez, Elijah Wyckoff, Aarti Lalwani, Kevin Patrick, Kenneth J. Loh, Emilia Farcas, Rose Yu

    Objective assessment of low back pain (LBP) is challenging due to subtle, task-dependent movement impairments that are poorly captured by existing sensing technologies. Motion Tape (MT), which is a self-adhesive elastic fabric skin strain sensor, enables skin-conforming measurement of localized biomechanical strain during functional movement, but its discriminative utility for LBP remains unclear. We examine this question in a multi-sensor, multi-movement setting and analyze whether MT signals encode discriminative structure that distinguishes individuals with LBP from healthy controls. Using data from 20 participants performing 19 functional movements with six sensors, we evaluate movement-specific classification under a leave-pair-out protocol and examine which movements, sensor placements, and features are most informative. Our analysis reveals that group separation is highly selective: only a small subset of movements, most notably forward flexion, consistently supports accurate classification, while many movements remain at near-chance level. We find that temporal dynamics features help in resolving difficult cases that global strain statistics fail to separate, and that informative signals are spatially localized to the lower lumbar spine. In contrast, pretrained time-series foundation models show negligible sensitivity to participant-level structure in MT signals. Overall, the findings from this exploratory study establish when and how MT sensing can effectively differentiate individuals with LBP from healthy controls, providing a principled foundation for larger-scale validation.

  • Open Access

    Movement-Based Low Back Pain Subgroups Using Motion Tape Strain Data with Biomechanical and Causal Feature Engineering

    by Aarti Lalwani, Sara P. Gombatto, Yasmin Velazquez, Elijah Wyckoff, Pratham Yashwante, Kevin Patrick, Kenneth J. Loh, Rose Yu, Emilia Farcas

    Low back pain (LBP) is a major global health problem and can result in a variety of movement impairments. Advances in smart technology have enabled the collection of novel streams of movement data, and machine learning (ML) methods have been increasingly used for data analysis. However, many existing technologies remain expensive and unsuitable for widespread clinical use, and ML approaches have largely focused on distinguishing people with LBP from healthy controls rather than identifying meaningful subgroups within the LBP population. Motion Tape (MT) is a recently developed wearable strain sensor that translates skin deformation from underlying movement and muscle engagement into electrical signals. In this exploratory study involving 10 participants with LBP, we demonstrate that MT data from six sensors applied on the lower back capture rich movement information capable of characterizing movement patterns among participants with LBP. We propose a feature engineering approach based on biomechanical features as well as time-series causal discovery applied to multivariate sensor time-series data to extract directed inter-segment coordination patterns. We further develop an exploratory subgroup discovery pipeline by aggregating clustering coassociation information across diverse movement tasks. Our causal coordination features show promising discriminative information across several movement types, capturing aspects of motor control not reflected in amplitude-based or embedding-based features alone, such as asymmetries and movement restrictions. Preliminary ensemble clustering analysis indicates three potential LBP subgroups distinguished by biomechanical and inter-segment coordination patterns, which may reflect varied strategies under different movement demands. We investigate the differences in clinical characteristics among these LBP subgroups. We show that time-series foundation models are not well suited for LBP subgrouping due to their uninterpretability, which is improved in our feature engineering pipeline. This framework could reveal additional subgroups with larger cohorts and may generalize to other sensor modalities.

  • Final technical report for DE-SC0022255: Discovering Physically Meaningful Structures from Climate Extreme Data

    by Rose Yu, Uc San Diego, Uc Irvine, Yian Ma, Stephan Mandt, Mike Prichard, Pierre Gentine, Elias Bareinboim

  • Open Access

    Assessing Low Back Movement with Motion Tape Sensor Data Through Deep Learning

    by Jared Levy, Aarti Lalwani, Elijah Wyckoff, Kenneth J. Loh, Sara P. Gombatto, Rose Yu, Emilia Farcas

    Back pain is a pervasive issue affecting a significant portion of the population, often worsened by certain movements of the lower back. Assessing these movements is important for helping clinicians prescribe appropriate physical therapy. However, it can be difficult to monitor patients’ movements remotely outside the clinic. High-fidelity data from motion capture sensors can be used to classify different movements, but these sensors are costly and impractical for use in free-living environments. Motion Tape (MT), a new fabric-based wearable sensor, addresses these issues by being low cost and portable. Despite these advantages, novelty and variability in sensor stability make the MT dataset small scale and inherent to noise. In this work, we propose the Motion-Tape Augmentation Inference Model (MT-AIM), a deep learning classification pipeline trained on MT data. In order to address the challenges of limited sample size and noise present within the MT dataset, MT-AIM leverages conditional generative models to generate synthetic MT data of a desired movement, as well as predicting joint kinematics as additional features. This combination of synthetic data generation and feature augmentation enables MT-AIM to achieve state-of-the-art accuracy in classifying lower back movements, bridging the gap between physiological sensing and movement analysis.


  • Top Cited Papers
    Open Access

    Physics-Guided Deep Learning for Dynamical Systems: A Survey

    by Rui Wang, Rose Yu

    Modeling complex physical dynamics is a fundamental task in science and engineering. Traditional physics-based models are sample efficient, and interpretable but often rely on rigid assumptions. Furthermore, direct numerical approximation is usually computationally intensive, requiring significant computational resources and expertise, and many real-world systems do not have fully-known governing laws. While deep learning (DL) provides novel alternatives for efficiently recognizing complex patterns and emulating nonlinear dynamics, its predictions do not necessarily obey the governing laws of physical systems, nor do they generalize well across different systems. Thus, the study of physics-guided DL emerged and has gained great progress. Physics-guided DL aims at taking the best from both physics-based modeling and state-of-the-art DL models to better solve scientific problems. In this article, we provide a structured overview of existing methodologies of integrating prior physical knowledge or physics-based modeling into DL, with a special emphasis on learning dynamical systems. We also discuss the fundamental challenges and emerging opportunities in the area.


  • Open Access

    Guardian-regularized Safe Offline Reinforcement Learning for Smart Weaning of Mechanical Circulatory Devices

    by Aysin Tumay, Sophia Sun, Sonia Fereidooni, Aaron Dumas, Elise Jortberg, Rose Yu

    We study the sequential decision-making problem for automated weaning of mechanical circulatory support (MCS) devices in cardiogenic shock patients. MCS devices are percutaneous micro-axial flow pumps that provide left ventricular unloading and forward blood flow, but current weaning strategies vary significantly across care teams and lack data-driven approaches. Offline reinforcement learning (RL) has proven to be successful in sequential decision-making tasks, but our setting presents challenges for training and evaluating traditional offline RL methods: prohibition of online patient interaction, highly uncertain circulatory dynamics due to concurrent treatments, and limited data availability. We developed an end-to-end machine learning framework with two key contributions (1) Clinically-aware OOD-regularized Model-based Policy Optimization (CORMPO), a density-regularized offline RL algorithm for out-of-distribution suppression that also incorporates clinically-informed reward shaping and (2) a Transformer-based probabilistic digital twin that models MCS circulatory dynamics for policy evaluation with rich physiological and clinical metrics. We prove that \textsf{CORMPO} achieves theoretical performance guarantees under mild assumptions. CORMPO attains a higher reward than the offline RL baselines by 28% and higher scores in clinical metrics by 82.6% on real and synthetic datasets. Our approach offers a principled framework for safe offline policy learning in high-stakes medical applications where domain expertise and safety constraints are essential.

  • Open Access

    SimulRAG: Simulator-based RAG for Grounding LLMs in Long-form Scientific QA

    by Haozhou Xu, Dongxia Wu, Matteo Chinazzi, Ruijia Niu, Rose Yu, Yi-An Ma

    Large language models (LLMs) show promise in solving scientific problems. They can help generate long-form answers for scientific questions, which are crucial for comprehensive understanding of complex phenomena that require detailed explanations spanning multiple interconnected concepts and evidence. However, LLMs often suffer from hallucination, especially in the challenging task of long-form scientific question answering. Retrieval-Augmented Generation (RAG) approaches can ground LLMs by incorporating external knowledge sources to improve trustworthiness. In this context, scientific simulators, which play a vital role in validating hypotheses, offer a particularly promising retrieval source to mitigate hallucination and enhance answer factuality. However, existing RAG approaches cannot be directly applied for scientific simulation-based retrieval due to two fundamental challenges: how to retrieve from scientific simulators, and how to efficiently verify and update long-form answers. To overcome these challenges, we propose the simulator-based RAG framework (SimulRAG) and provide a long-form scientific QA benchmark covering climate science and epidemiology with ground truth verified by both simulations and human annotators. In this framework, we propose a generalized simulator retrieval interface to transform between textual and numerical modalities. We further design a claim-level generation method that utilizes uncertainty estimation scores and simulator boundary assessment (UE+SBA) to efficiently verify and update claims. Extensive experiments demonstrate SimulRAG outperforms traditional RAG baselines by 30.4% in informativeness and 16.3% in factuality. UE+SBA further improves efficiency and quality for claim-level generation.

  • Open Access

    Understanding Mode Connectivity via Parameter Space Symmetry

    by Bo Zhao, Nima Dehmamy, Robin Walters, Rose Yu

    Neural network minima are often connected by curves along which train and test loss remain nearly constant, a phenomenon known as mode connectivity. While this property has enabled applications such as model merging and fine-tuning, its theoretical explanation remains unclear. We propose a new approach to exploring the connectedness of minima using parameter space symmetry. By linking the topology of symmetry groups to that of the minima, we derive the number of connected components of the minima of linear networks and show that skip connections reduce this number. We then examine when mode connectivity and linear mode connectivity hold or fail, using parameter symmetries which account for a significant part of the minimum. Finally, we provide explicit expressions for connecting curves in the minima induced by symmetry. Using the curvature of these curves, we derive conditions under which linear mode connectivity approximately holds. Our findings highlight the role of continuous symmetries in understanding the neural network loss landscape.

  • Open Access

    Improving Learning to Optimize Using Parameter Symmetries

    by Guy Zamir, Aryan Dokania, Bo Zhao, Rose Yu

    We analyze a learning-to-optimize (L2O) algorithm that exploits parameter space symmetry to enhance optimization efficiency. Prior work has shown that jointly learning symmetry transformations and local updates improves meta-optimizer performance. Supporting this, our theoretical analysis demonstrates that even without identifying the optimal group element, the method locally resembles Newton's method. We further provide an example where the algorithm provably learns the correct symmetry transformation during training. To empirically evaluate L2O with teleportation, we introduce a benchmark, analyze its success and failure cases, and show that enhancements like momentum further improve performance. Our results highlight the potential of leveraging neural network parameter space symmetry to advance meta-optimization.

  • Open Access

    Back to Bayesics: Uncovering Human Mobility Distributions and Anomalies with an Integrated Statistical and Neural Framework

    by Minxuan Duan, Yinlong Qian, Lingyi Zhao, Zihao Zhou, Zeeshan Rasheed, Rose Yu, Khurram Shafique

    Existing methods for anomaly detection often fall short due to their inability to handle the complexity, heterogeneity, and high dimensionality inherent in real-world mobility data. In this paper, we propose DeepBayesic, a novel framework that integrates Bayesian principles with deep neural networks to model the underlying multivariate distributions from sparse and complex datasets. Unlike traditional models, DeepBayesic is designed to manage heterogeneous inputs, accommodating both continuous and categorical data to provide a more comprehensive understanding of mobility patterns. The framework features customized neural density estimators and hybrid architectures, allowing for flexibility in modeling diverse feature distributions and enabling the use of specialized neural networks tailored to different data types. Our approach also leverages agent embeddings for personalized anomaly detection, enhancing its ability to distinguish between normal and anomalous behaviors for individual agents. We evaluate our approach on several mobility datasets, demonstrating significant improvements over state-of-the-art anomaly detection methods. Our results indicate that incorporating personalization and advanced sequence modeling techniques can substantially enhance the ability to detect subtle and complex anomalies in spatiotemporal event sequences.