Alessia De Biase
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Research Subjects
Alessia De Biase has a total of 34 co-authors. Here are the top co-authors by number of shared publications:
- Peter Martinus Adranius van Ooijen
University of Groningen, University Medical Center Groningen, Department of Radiation Oncology, Groningen, the Netherlands
12 shared publications - Nanna Maria Sijtsema
Department of Radiation Oncology, University Medical Center Groningen, University of Groningen, Groningen, The Netherlands
11 shared publications - Baoqiang Ma
Department of Radiation Oncology, University of Groningen, University Medical Center Groningen, Groningen, Netherlands
4 shared publications - Johannes Albertus Langendijk
Department of Radiation Oncology, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands
4 shared publications Lisanne V. van Dijk
Department of Radiation Oncology, University Medical Centre Groningen (UMCG), Groningen 9700 RB, the Netherlands
4 shared publications- Lisanne Vania van Dijk
Department of Radiation Oncology, University Medical Center Groningen, University of Groningen, Groningen, The Netherlands
4 shared publications
Latest Publications
- Open Access
- 20 October 2026
- Published by Elsevier in Computer Methods and Programs in Biomedicine
- Vol. 288
Longitudinal CT imaging to predict radiotherapy treatment outcome in head and neck cancer: a deep learning approach
- 20 October 2026
- Published by Elsevier in Computer Methods and Programs in Biomedicine
- Vol. 288
Open AccessLongitudinal CT imaging to predict radiotherapy treatment outcome in head and neck cancer: a deep learning approach
- Open Access
- 27 March 2025
- Published by Elsevier in Computerized Medical Imaging and Graphics
- Vol. 123, 102535
Uncertainty-aware deep learning for segmentation of primary tumor and pathologic lymph nodes in oropharyngeal cancer: Insights from a multi-center cohort
- 27 March 2025
- Published by Elsevier in Computerized Medical Imaging and Graphics
- Vol. 123, 102535
Open AccessUncertainty-aware deep learning for segmentation of primary tumor and pathologic lymph nodes in oropharyngeal cancer: Insights from a multi-center cohort
- Open Access
- 14 February 2025
- Published by Elsevier in Physics and Imaging in Radiation Oncology
- Vol. 33, 100733
The prognostic value of pathologic lymph node imaging using deep learning-based outcome prediction in oropharyngeal cancer patients
- 14 February 2025
- Published by Elsevier in Physics and Imaging in Radiation Oncology
- Vol. 33, 100733
Open AccessThe prognostic value of pathologic lymph node imaging using deep learning-based outcome prediction in oropharyngeal cancer patients
- 8 October 2024
- Published by University of Groningen Press
Artificial intelligence in head and neck radiotherapy
- 8 October 2024
- Published by University of Groningen Press
Artificial intelligence in head and neck radiotherapy
- Open Access
- 28 May 2024
- Published by Elsevier in Computers in Biology and Medicine
- Vol. 177, 108675
Probability maps for deep learning-based head and neck tumor segmentation: Graphical User Interface design and test
- 28 May 2024
- Published by Elsevier in Computers in Biology and Medicine
- Vol. 177, 108675
Open AccessProbability maps for deep learning-based head and neck tumor segmentation: Graphical User Interface design and test
- Open Access
- 14 March 2024
- Published by Springer Nature in Research Square
Uncertainty-Aware Deep Learning for Segmentation of Primary Tumour and Pathologic Lymph Nodes in Oropharyngeal Cancer: Insights from a Multi-Centre Cohort
Purpose Within the medical field, there is a growing demand for deep learning (DL) models which convey model certainty to the end-user, while maintaining alignment between model accuracy and certainty. For oropharyngeal cancer (OPC) primary tumour (PT) segmentation in PET/CT images, an ensemble-based DL model was developed which outputs tumour probability maps (TPM) showing voxel-level predicted probabilities. This study extended the network to generate TPMs for both PT and pathologic lymph nodes (PL) and explored whether quantified uncertainty in TPMs can predict segmentation model accuracy in an independent external cohort. Methods We gathered PET/CT images and manual delineations of gross tumour volume of the PT (GTVp) and PL (GTVln) of 405 OPC patients treated with (chemo)radiation in our institute in 2010-2022. The publicly available 2022 HECKTOR challenge dataset served as external test set. The existing network was adapted to perform multi-label segmentation, training 15 models and considering the ensemble average of predicted TPMs per patient. Surface and aggregate DSC were computed for the predicted contours at different probability thresholds. Uncertainty was quantified by coefficient of variation (CV) of multiple predictions. Results GTVln segmentation showed slightly lower performance than GTVp: aggregate DSC of 0.66 and 0.67 in the internal, 0.70 and 0.75 in the external test sets. However, a significant negative correlation (about -0.6) was observed in both test sets between Average Surface DSC and CV for both structures, indicating a significant calibration. Conclusion Significant accuracy versus uncertainty calibration was achieved for TPMs in both internal and external test sets, indicating the potential use of CV to identify cases with lower GTVp and GTVln segmentation accuracy, independently of the dataset.
- 14 March 2024
- Published by Springer Nature in Research Square
Open AccessUncertainty-Aware Deep Learning for Segmentation of Primary Tumour and Pathologic Lymph Nodes in Oropharyngeal Cancer: Insights from a Multi-Centre Cohort
Purpose Within the medical field, there is a growing demand for deep learning (DL) models which convey model certainty to the end-user, while maintaining alignment between model accuracy and certainty. For oropharyngeal cancer (OPC) primary tumour (PT) segmentation in PET/CT images, an ensemble-based DL model was developed which outputs tumour probability maps (TPM) showing voxel-level predicted probabilities. This study extended the network to generate TPMs for both PT and pathologic lymph nodes (PL) and explored whether quantified uncertainty in TPMs can predict segmentation model accuracy in an independent external cohort. Methods We gathered PET/CT images and manual delineations of gross tumour volume of the PT (GTVp) and PL (GTVln) of 405 OPC patients treated with (chemo)radiation in our institute in 2010-2022. The publicly available 2022 HECKTOR challenge dataset served as external test set. The existing network was adapted to perform multi-label segmentation, training 15 models and considering the ensemble average of predicted TPMs per patient. Surface and aggregate DSC were computed for the predicted contours at different probability thresholds. Uncertainty was quantified by coefficient of variation (CV) of multiple predictions. Results GTVln segmentation showed slightly lower performance than GTVp: aggregate DSC of 0.66 and 0.67 in the internal, 0.70 and 0.75 in the external test sets. However, a significant negative correlation (about -0.6) was observed in both test sets between Average Surface DSC and CV for both structures, indicating a significant calibration. Conclusion Significant accuracy versus uncertainty calibration was achieved for TPMs in both internal and external test sets, indicating the potential use of CV to identify cases with lower GTVp and GTVln segmentation accuracy, independently of the dataset.
- Open Access
- 1 January 2024
- Published by Oxford University Press (OUP) in BJR|Artificial Intelligence
- Vol. 1 (1)
Clinical adoption of deep learning target auto-segmentation for radiation therapy: challenges, clinical risks, and mitigation strategies
Radiation therapy is a localized cancer treatment that relies on precise delineation of the target to be treated and healthy tissues to guarantee optimal treatment effect. This step, known as contouring or segmentation, involves identifying both target volumes and organs at risk on imaging modalities like CT, PET, and MRI to guide radiation delivery. Manual segmentation, however, is time-consuming and highly subjective, despite the presence of contouring guidelines. In recent years, automated segmentation methods, particularly deep learning models, have shown promise in addressing this task. However, challenges persist in their clinical use, including the need for robust quality assurance (QA) processes and addressing clinical risks associated with the use of the models. This review examines the challenges and considerations of the clinical adoption of deep learning target auto-segmentation in radiotherapy, focused on the target volume. We discuss potential clinical risks (eg, over- and under-segmentation, automation bias, and appropriate trust), mitigation strategies (eg, human oversight, uncertainty quantification, and education of clinical professionals), and we highlight the importance of expanding QA to include geometric, dose-volume, and outcome-based performance monitoring. While deep learning target auto-segmentation offers significant potential benefits, careful attention to clinical risks and rigorous QA measures are essential for its successful integration in clinical practice.
- 1 January 2024
- Published by Oxford University Press (OUP) in BJR|Artificial Intelligence
- Vol. 1 (1)
Open AccessClinical adoption of deep learning target auto-segmentation for radiation therapy: challenges, clinical risks, and mitigation strategies
Radiation therapy is a localized cancer treatment that relies on precise delineation of the target to be treated and healthy tissues to guarantee optimal treatment effect. This step, known as contouring or segmentation, involves identifying both target volumes and organs at risk on imaging modalities like CT, PET, and MRI to guide radiation delivery. Manual segmentation, however, is time-consuming and highly subjective, despite the presence of contouring guidelines. In recent years, automated segmentation methods, particularly deep learning models, have shown promise in addressing this task. However, challenges persist in their clinical use, including the need for robust quality assurance (QA) processes and addressing clinical risks associated with the use of the models. This review examines the challenges and considerations of the clinical adoption of deep learning target auto-segmentation in radiotherapy, focused on the target volume. We discuss potential clinical risks (eg, over- and under-segmentation, automation bias, and appropriate trust), mitigation strategies (eg, human oversight, uncertainty quantification, and education of clinical professionals), and we highlight the importance of expanding QA to include geometric, dose-volume, and outcome-based performance monitoring. While deep learning target auto-segmentation offers significant potential benefits, careful attention to clinical risks and rigorous QA measures are essential for its successful integration in clinical practice.
- Open Access
- 22 November 2023
- Published by Elsevier in Computer Methods and Programs in Biomedicine
- Vol. 244, 107939
Deep learning-based outcome prediction using PET/CT and automatically predicted probability maps of primary tumor in patients with oropharyngeal cancer
- 22 November 2023
- Published by Elsevier in Computer Methods and Programs in Biomedicine
- Vol. 244, 107939
Open AccessDeep learning-based outcome prediction using PET/CT and automatically predicted probability maps of primary tumor in patients with oropharyngeal cancer
- 4 September 2023
- Published by Morressier GmbH
Uncertainty-aware deep learning: single- versus multi-label semantic segmentation of head and neck cancer in PET/CT images
**Abstract text** Within the medical field, there is a growing demand for deploying deep learning (DL) models which convey model certainty to the | POSTER
- 4 September 2023
- Published by Morressier GmbH
Uncertainty-aware deep learning: single- versus multi-label semantic segmentation of head and neck cancer in PET/CT images
**Abstract text** Within the medical field, there is a growing demand for deploying deep learning (DL) models which convey model certainty to the | POSTER
- 29 August 2023
- Published by Morressier GmbH
Automatic Early Stage Tumor Delineation on the 10 Breathing Phases of 4DCT
**Abstract text** Stereotactic body radiotherapy (SBRT) is the standard approach for patients with early stage lung cancer who are inoperable bec | POSTER
- 29 August 2023
- Published by Morressier GmbH
Automatic Early Stage Tumor Delineation on the 10 Breathing Phases of 4DCT
**Abstract text** Stereotactic body radiotherapy (SBRT) is the standard approach for patients with early stage lung cancer who are inoperable bec | POSTER