Jing Yu
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Previous Organizations / Institutes
The organizations / institutes from the scholar's other articles in the past ten years
Jing Yu has a total of 79 co-authors. Here are the top co-authors by number of shared publications:
- Yougen Wu
School of Breeding and Multiplication (Sanya Institute of Breeding and Multiplication), Hainan University, Sanya 572025, China
12 shared publications - Dongmei Yang
School of Breeding and Multiplication (Sanya Institute of Breeding and Multiplication), School of Tropical Agriculture and Forestry, Hainan University, Sanya 572025, China
9 shared publications - Ya Liu
School of Breeding and Multiplication (Sanya Institute of Breeding and Multiplication), School of Tropical Agriculture and Forestry, Hainan University, Sanya 572025, China
8 shared publications - Hongjuan Zhu
School of Law Sanya College Sanya China
4 shared publications - Huageng Yang
School of Breeding and Multiplication (Sanya Institute of Breeding and Multiplication), School of Tropical Agriculture and Forestry, Hainan University, Sanya 572025, China
4 shared publications - Rui Guo
School of Breeding and Multiplication (Sanya Institute of Breeding and Multiplication) School of Tropical Agriculture and Forestry Hainan University Sanya China
4 shared publications
Latest Publications
- Open Access
- 7 February 2026
- Published by Elsevier in Trees, Forests and People
- Vol. 24
Current status and threatening factors of the critically endangered mangrove fern Acrostichum speciosum in China
- 7 February 2026
- Published by Elsevier in Trees, Forests and People
- Vol. 24
Open AccessCurrent status and threatening factors of the critically endangered mangrove fern Acrostichum speciosum in China
- Open Access
Integration of Transcriptome, miRNA-Omics, and Hormone Metabolism Analysis Reveals the Regulatory Network of Camellia drupifera Fruit Maturation
Camellia drupifera is an important woody oil crop with high economic and medicinal value. Fruit maturation is a complex process regulated by hormones and gene networks, yet its molecular basis remains unclear. Here, we integrated hormone profiling (IAA, GA3, ABA), transcriptomics, and miRNA-omics across three key stages: nutrient synthesis (S1), lipid accumulation (S4), and maturation (S7). During early development (S1), IAA and GA3 levels peaked, accompanied by the upregulation of growth-related genes (AUX1, ARF, GID1), which promote fruit growth. By maturation (S7), ABA content increased markedly, activating PYR/PYL, PP2C, and ABF, while IAA and GA3 declined. Transcriptome analysis revealed 45 key differentially expressed genes correlated with hormone levels. In parallel, miRNAs such as miR393-z (targeting TIR1) and novel-m0146-5p (targeting ARF1) were identified as regulators of hormone signaling and fruit maturation. Collectively, our results highlight a coordinated “hormone–miRNA–mRNA” regulatory network underlying C. drupifera fruit development. These findings provide new insights into the molecular regulation of fruit maturation and lipid accumulation in woody oil crops, offering a foundation for genetic improvement and efficient utilization of this species.
Open AccessIntegration of Transcriptome, miRNA-Omics, and Hormone Metabolism Analysis Reveals the Regulatory Network of Camellia drupifera Fruit Maturation
Camellia drupifera is an important woody oil crop with high economic and medicinal value. Fruit maturation is a complex process regulated by hormones and gene networks, yet its molecular basis remains unclear. Here, we integrated hormone profiling (IAA, GA3, ABA), transcriptomics, and miRNA-omics across three key stages: nutrient synthesis (S1), lipid accumulation (S4), and maturation (S7). During early development (S1), IAA and GA3 levels peaked, accompanied by the upregulation of growth-related genes (AUX1, ARF, GID1), which promote fruit growth. By maturation (S7), ABA content increased markedly, activating PYR/PYL, PP2C, and ABF, while IAA and GA3 declined. Transcriptome analysis revealed 45 key differentially expressed genes correlated with hormone levels. In parallel, miRNAs such as miR393-z (targeting TIR1) and novel-m0146-5p (targeting ARF1) were identified as regulators of hormone signaling and fruit maturation. Collectively, our results highlight a coordinated “hormone–miRNA–mRNA” regulatory network underlying C. drupifera fruit development. These findings provide new insights into the molecular regulation of fruit maturation and lipid accumulation in woody oil crops, offering a foundation for genetic improvement and efficient utilization of this species.
- Open Access
- 11 October 2025
- Published by Wiley in Biological Diversity
- Vol. 2 (4) , 143-153
Common but Least Noticed: Diversity of the Mangrove Fern Acrostichum aureum in Hainan Island, China
Acrostichum aureum across nine coastal sites in Hainan Island was examined using morphological, cytometric, and genomic approaches. Cluster analysis identified five ecologically distinct clades linked to pinna morphology and habitat. Flow cytometry suggested sexual reproduction without ploidy‐spore number correlation. Genetic analyses revealed cohesive population structure with minor introgression from Acrostichum speciosum (12 samples), relatively low nucleotide diversity (π = 0.0647–0.0780), outcrossing dominance indicated by high heterozygosity ( H o = 0.0771–0.1042) and negative inbreeding coefficients ( F is = −0.0407–0.0017), and minimal differentiation ( F st < 0.05) among populations. Despite widespread distribution, the species exhibits moderate genetic variation, highlighting vulnerability to environmental changes. Based on the heterozygosity and π, three priority conservation areas are proposed to preserve extant genetic diversity and maintain habitat connectivity. These findings underscore the need for targeted protection of this ecologically significant mangrove fern.
- 11 October 2025
- Published by Wiley in Biological Diversity
- Vol. 2 (4) , 143-153
Open AccessCommon but Least Noticed: Diversity of the Mangrove Fern Acrostichum aureum in Hainan Island, China
Acrostichum aureum across nine coastal sites in Hainan Island was examined using morphological, cytometric, and genomic approaches. Cluster analysis identified five ecologically distinct clades linked to pinna morphology and habitat. Flow cytometry suggested sexual reproduction without ploidy‐spore number correlation. Genetic analyses revealed cohesive population structure with minor introgression from Acrostichum speciosum (12 samples), relatively low nucleotide diversity (π = 0.0647–0.0780), outcrossing dominance indicated by high heterozygosity ( H o = 0.0771–0.1042) and negative inbreeding coefficients ( F is = −0.0407–0.0017), and minimal differentiation ( F st < 0.05) among populations. Despite widespread distribution, the species exhibits moderate genetic variation, highlighting vulnerability to environmental changes. Based on the heterozygosity and π, three priority conservation areas are proposed to preserve extant genetic diversity and maintain habitat connectivity. These findings underscore the need for targeted protection of this ecologically significant mangrove fern.
- Open Access
Comprehensive Quality Comparison of Camellia vietnamensis Seed Oil from Different Cultivars in Hainan Island
Camellia vietnamensis grows in a unique tropical environment, and its seed oil has a rich aroma. The content of unsaturated fatty acids in C. vietnamensis oil is up to 90%, which can regulate human lipid metabolism and prevent cardiovascular and cerebrovascular diseases. Compared with olive oil, C. vietnamensis oil has a higher content of unsaturated fatty acids. This study used eleven C. vietnamensis cultivars cultivated on Hainan Island. Among the 11 cultivars, “Boao 1” had fruits with the largest vertical diameter of 45.05 mm, while “Haida 1” had fruits with the largest horizontal diameter, single-fruit weight, and fresh 100-grain weight of 53.5 mm, 70.6 g, and 479.01 g, respectively. “Boao 3” had an acid value and peroxide value of 1.59 mg/g and 3.50 mmol/kg, respectively, and its saponification value content was 213.18 mg/g. “Boao 5” had the highest iodine value, 101.86 g/100 g, among the 11 cultivars. The content of unsaturated fatty acids in the seed oil of 11 cultivars ranged from 84.87% to 87.38%. The qRT-PCR results confirmed that “Boao 3” had a higher content of flavonoids and fatty acids than other cultivars. The comprehensive analysis of physiological and biochemical indices showed that the top five cultivars were “Haida 1”, “Boao 3”, “Haida 2”, “Boao 1”, and “Boao 5”. These five cultivars were suitable for large-scale cultivation in tropical regions, such as Hainan Island. This study provided a theoretical basis for the breeding of C. vietnamensis cultivars in tropical regions.
Open AccessComprehensive Quality Comparison of Camellia vietnamensis Seed Oil from Different Cultivars in Hainan Island
Camellia vietnamensis grows in a unique tropical environment, and its seed oil has a rich aroma. The content of unsaturated fatty acids in C. vietnamensis oil is up to 90%, which can regulate human lipid metabolism and prevent cardiovascular and cerebrovascular diseases. Compared with olive oil, C. vietnamensis oil has a higher content of unsaturated fatty acids. This study used eleven C. vietnamensis cultivars cultivated on Hainan Island. Among the 11 cultivars, “Boao 1” had fruits with the largest vertical diameter of 45.05 mm, while “Haida 1” had fruits with the largest horizontal diameter, single-fruit weight, and fresh 100-grain weight of 53.5 mm, 70.6 g, and 479.01 g, respectively. “Boao 3” had an acid value and peroxide value of 1.59 mg/g and 3.50 mmol/kg, respectively, and its saponification value content was 213.18 mg/g. “Boao 5” had the highest iodine value, 101.86 g/100 g, among the 11 cultivars. The content of unsaturated fatty acids in the seed oil of 11 cultivars ranged from 84.87% to 87.38%. The qRT-PCR results confirmed that “Boao 3” had a higher content of flavonoids and fatty acids than other cultivars. The comprehensive analysis of physiological and biochemical indices showed that the top five cultivars were “Haida 1”, “Boao 3”, “Haida 2”, “Boao 1”, and “Boao 5”. These five cultivars were suitable for large-scale cultivation in tropical regions, such as Hainan Island. This study provided a theoretical basis for the breeding of C. vietnamensis cultivars in tropical regions.
- Open Access
Continuous Cropping of Patchouli Alleviate Soil Properties, Enzyme Activities, and Bacterial Community Structures
Pogostemon cablin (Patchouli), an essential medicinal plant in the Lamiaceae family, faces significant challenges under continuous cropping (CC) obstacles. This study examined the rhizospheric soil bacterial communities of patchouli under four different CC years, zero (CK), one (T1), two (T2), and three (T3) years through high-throughput 16S rRNA gene amplicon sequencing. Results showed long-term CC led to significant soil properties and enzyme activity shifts. Key parameters such as soil pH and total potassium (TK) decreased, while ammonium nitrogen (NH4+–N), soil organic carbon (SOC), nitrate nitrogen (NO3−–N), available potassium (AK), available phosphorus (AP), total nitrogen (TN), and total phosphorus (TP) increased over the cropping years. Enzyme activities, including ß-glucosidase (ß-GC), polyphenol oxidase (PPO), catalase (CAT), N-acetyl-β-D-glucosaminidase (NAG), and leucine aminopeptidase (LAP), were notably affected. The CC altered the bacterial community structure and composition, reducing the relative abundance of Proteobacteria, Firmicutes, Actinobacteria, and Planctomycetota over time. These findings highlight the impact of CC on patchouli rhizosphere bacteria, providing insights for improved soil management and fertilization strategies in CC systems.
Open AccessContinuous Cropping of Patchouli Alleviate Soil Properties, Enzyme Activities, and Bacterial Community Structures
Pogostemon cablin (Patchouli), an essential medicinal plant in the Lamiaceae family, faces significant challenges under continuous cropping (CC) obstacles. This study examined the rhizospheric soil bacterial communities of patchouli under four different CC years, zero (CK), one (T1), two (T2), and three (T3) years through high-throughput 16S rRNA gene amplicon sequencing. Results showed long-term CC led to significant soil properties and enzyme activity shifts. Key parameters such as soil pH and total potassium (TK) decreased, while ammonium nitrogen (NH4+–N), soil organic carbon (SOC), nitrate nitrogen (NO3−–N), available potassium (AK), available phosphorus (AP), total nitrogen (TN), and total phosphorus (TP) increased over the cropping years. Enzyme activities, including ß-glucosidase (ß-GC), polyphenol oxidase (PPO), catalase (CAT), N-acetyl-β-D-glucosaminidase (NAG), and leucine aminopeptidase (LAP), were notably affected. The CC altered the bacterial community structure and composition, reducing the relative abundance of Proteobacteria, Firmicutes, Actinobacteria, and Planctomycetota over time. These findings highlight the impact of CC on patchouli rhizosphere bacteria, providing insights for improved soil management and fertilization strategies in CC systems.
- Open Access
The Role of Camellia Shell Substrates in Modulating the Nutritional Characteristics of Pleurotus pulmonarius
Camellia shells are the main by-product of camellia seed processing and are usually incinerated or disposed of as agricultural waste. In this study, camellia shells were employed in the Pleurotus pulmonarius cultivation process using five distinct formulae substituting for cottonseed shells. Our results show that as the substitution rate of camellia shells increased from 0% to 35%, the protein content in P. pulmonarius significantly increased from 34.05% to 53.35%. The polysaccharide content reached a peak value of 5.62% at 30% substitution of camellia shells. The DPPH free radical scavenging rate reached its maximum of 82.70% at 20% substitution of camellia shells. Furthermore, increases in the total amino acid contents in P. pulmonarius were positively correlated with the substitution rate of camellia shells. Considering the yield characteristics, the formula of 20% camellia shell substitution tested in this study appears to be optimal for P. pulmonarius cultivation. These findings not only provide a substrate to enhance the nutritional quality of P. pulmonarius but also demonstrate a novel approach for the ecological utilization of camellia shells.
Open AccessThe Role of Camellia Shell Substrates in Modulating the Nutritional Characteristics of Pleurotus pulmonarius
Camellia shells are the main by-product of camellia seed processing and are usually incinerated or disposed of as agricultural waste. In this study, camellia shells were employed in the Pleurotus pulmonarius cultivation process using five distinct formulae substituting for cottonseed shells. Our results show that as the substitution rate of camellia shells increased from 0% to 35%, the protein content in P. pulmonarius significantly increased from 34.05% to 53.35%. The polysaccharide content reached a peak value of 5.62% at 30% substitution of camellia shells. The DPPH free radical scavenging rate reached its maximum of 82.70% at 20% substitution of camellia shells. Furthermore, increases in the total amino acid contents in P. pulmonarius were positively correlated with the substitution rate of camellia shells. Considering the yield characteristics, the formula of 20% camellia shell substitution tested in this study appears to be optimal for P. pulmonarius cultivation. These findings not only provide a substrate to enhance the nutritional quality of P. pulmonarius but also demonstrate a novel approach for the ecological utilization of camellia shells.
- Open Access
The Extraction Using Deep Eutectic Solvents and Evaluation of Tea Saponin
Tea saponins have high surface-active and biological activities and are widely used in chemicals, food, pharmaceuticals, and pesticides. Tea saponins are usually extracted using ethanol or water, but both methods have their disadvantages, including a negative impact on the environment, high energy consumption, and low purity. In this study, we explored an effective process for extracting tea saponins from tea meal using deep eutectic solvents combined with ultrasonic extraction and enzymatic techniques. The experimental results showed that a high extraction efficiency of 20.93 ± 0.48% could be achieved in 20 min using an ultrasonic power of 40% and a binary DES consisting of betaine and ethylene glycol (with a molar ratio of 1:3) at a material–liquid ratio of 1:35 and that the purity of the tea saponins after purification by a large-pore adsorption resin reached 95.94%, which was higher than that of commercially available standard tea saponin samples. In addition, the extracted tea saponins were evaluated for their antioxidant and bacteriostatic activities using chemical and biological methods; the results showed that the tea saponins extracted using these methods possessed antioxidant properties and displayed significant antibacterial activity. Therefore, the present study developed a method for using deep eutectic solvents as an environmentally friendly technological solution for obtaining high-purity tea saponins from tea meal oil. This is expected to replace the current organic solvent and water extraction process and has great potential for industrial development and a number of possible applications.
Open AccessThe Extraction Using Deep Eutectic Solvents and Evaluation of Tea Saponin
Tea saponins have high surface-active and biological activities and are widely used in chemicals, food, pharmaceuticals, and pesticides. Tea saponins are usually extracted using ethanol or water, but both methods have their disadvantages, including a negative impact on the environment, high energy consumption, and low purity. In this study, we explored an effective process for extracting tea saponins from tea meal using deep eutectic solvents combined with ultrasonic extraction and enzymatic techniques. The experimental results showed that a high extraction efficiency of 20.93 ± 0.48% could be achieved in 20 min using an ultrasonic power of 40% and a binary DES consisting of betaine and ethylene glycol (with a molar ratio of 1:3) at a material–liquid ratio of 1:35 and that the purity of the tea saponins after purification by a large-pore adsorption resin reached 95.94%, which was higher than that of commercially available standard tea saponin samples. In addition, the extracted tea saponins were evaluated for their antioxidant and bacteriostatic activities using chemical and biological methods; the results showed that the tea saponins extracted using these methods possessed antioxidant properties and displayed significant antibacterial activity. Therefore, the present study developed a method for using deep eutectic solvents as an environmentally friendly technological solution for obtaining high-purity tea saponins from tea meal oil. This is expected to replace the current organic solvent and water extraction process and has great potential for industrial development and a number of possible applications.
- Open Access
- 14 May 2024
- Published by Magnolia Press in Phytotaxa
- Vol. 647 (3) , 223-236
New taxonomic treatments in the Pteris fauriei group (Pteridaceae)
The dividing lines between species in the Pteris fauriei group (Pteridaceae) are questionable and the systematic positions of some species in this group remain unclear. To help comprehensively understand the phylogenetic relationships and resolve the taxonomic problems in this group a phylogenetic tree was reconstructed based on five chloroplast DNA regions (atpA, matK, rbcL, rps4-trnS & trnL-trnF) from 22 Pteris taxa. Additionally, their spore morphology and type materials were studied. Based on the molecular and morphology evidence, we made treatments as follow: P. oshimensis Hieron. var. paraemeiensis Ching ex Ching et S.H. Wu was raised as a species from a variety of P. oshimensis Hieron; P. fauriei Hieron. var. chinensis Ching et S.H. Wu was treated as a synonym of P. austrotaiwanensis Y.S. Chao, rather than a synonym of P. latipinna Y.S. Chao & W.L. Chiou; and P. omeiensis Ching was restored to species status from a synonym of P. oshimensis Hieron.
- 14 May 2024
- Published by Magnolia Press in Phytotaxa
- Vol. 647 (3) , 223-236
Open AccessNew taxonomic treatments in the Pteris fauriei group (Pteridaceae)
The dividing lines between species in the Pteris fauriei group (Pteridaceae) are questionable and the systematic positions of some species in this group remain unclear. To help comprehensively understand the phylogenetic relationships and resolve the taxonomic problems in this group a phylogenetic tree was reconstructed based on five chloroplast DNA regions (atpA, matK, rbcL, rps4-trnS & trnL-trnF) from 22 Pteris taxa. Additionally, their spore morphology and type materials were studied. Based on the molecular and morphology evidence, we made treatments as follow: P. oshimensis Hieron. var. paraemeiensis Ching ex Ching et S.H. Wu was raised as a species from a variety of P. oshimensis Hieron; P. fauriei Hieron. var. chinensis Ching et S.H. Wu was treated as a synonym of P. austrotaiwanensis Y.S. Chao, rather than a synonym of P. latipinna Y.S. Chao & W.L. Chiou; and P. omeiensis Ching was restored to species status from a synonym of P. oshimensis Hieron.
- Open Access
Endophytic Fungal Diversity of Mangrove Ferns Acrostichum speciosum and A. aureum in China
Microbial communities are an important component of mangrove ecosystems. In order to reveal the diversity of endophytic fungi in the mangrove ferns Acrostichum speciosum and A. aureum in China, the internal transcribed spacer (ITS) regions of endophytic fungi in four plant tissues (leaves, petioles, roots, and rhizomes) from three locations (Zhanjiang, Haikou, and Wenchang) were sequenced. The richness, species composition, and community similarity were analyzed. The main results are as follows: the dominant fungi in A. speciosum and A. aureum belonged to the phyla Ascomycota and Basidiomycota, accounting for more than 75% of the total identified fungi; in terms of species composition at the operational taxonomic unit (OTU) level, the endophytic fungi in A. aureum were more diverse than those in A. speciosum, and the endophytic fungi in rhizomes were more diverse than in other tissues. In Zhanjiang, both A. speciosum and A. aureum showed the richest diversity of endophytic fungi, both at the OTU classification level and in terms of species composition. Conversely, the richness of endophytic fungi in the samples of A. speciosum from Wenchang and Haikou is extremely low. The regional differences in dominant fungi increase with the degrading of taxonomic levels, and there were also significant differences in the number of unique fungi among different origins, with Zhanjiang samples having a larger number of unique fungi than the other locations. There were significant differences in the dominant fungi among different tissues, with Xylariales being the dominant fungi in rhizomes of A. speciosum and Hypocreales being the dominant fungi in the petioles, roots, and rhizomes of A. aureum. Overall, the community similarity of endophytic fungi among locations is moderately dissimilar (26–50%), while the similarity between tissues is moderately similar (51–75%). The low diversity of endophytic fungi could be one of the main reasons for the endangerment of A. speciosum. The protection of the diversity of endophytic fungi in the underground parts of A. speciosum is essential for the conservation of this critically endangered mangrove fern.
Open AccessEndophytic Fungal Diversity of Mangrove Ferns Acrostichum speciosum and A. aureum in China
Microbial communities are an important component of mangrove ecosystems. In order to reveal the diversity of endophytic fungi in the mangrove ferns Acrostichum speciosum and A. aureum in China, the internal transcribed spacer (ITS) regions of endophytic fungi in four plant tissues (leaves, petioles, roots, and rhizomes) from three locations (Zhanjiang, Haikou, and Wenchang) were sequenced. The richness, species composition, and community similarity were analyzed. The main results are as follows: the dominant fungi in A. speciosum and A. aureum belonged to the phyla Ascomycota and Basidiomycota, accounting for more than 75% of the total identified fungi; in terms of species composition at the operational taxonomic unit (OTU) level, the endophytic fungi in A. aureum were more diverse than those in A. speciosum, and the endophytic fungi in rhizomes were more diverse than in other tissues. In Zhanjiang, both A. speciosum and A. aureum showed the richest diversity of endophytic fungi, both at the OTU classification level and in terms of species composition. Conversely, the richness of endophytic fungi in the samples of A. speciosum from Wenchang and Haikou is extremely low. The regional differences in dominant fungi increase with the degrading of taxonomic levels, and there were also significant differences in the number of unique fungi among different origins, with Zhanjiang samples having a larger number of unique fungi than the other locations. There were significant differences in the dominant fungi among different tissues, with Xylariales being the dominant fungi in rhizomes of A. speciosum and Hypocreales being the dominant fungi in the petioles, roots, and rhizomes of A. aureum. Overall, the community similarity of endophytic fungi among locations is moderately dissimilar (26–50%), while the similarity between tissues is moderately similar (51–75%). The low diversity of endophytic fungi could be one of the main reasons for the endangerment of A. speciosum. The protection of the diversity of endophytic fungi in the underground parts of A. speciosum is essential for the conservation of this critically endangered mangrove fern.
- Top Cited PapersOpen Access
- 5 August 2023
- Published by MDPI AG in International Journal of Molecular Sciences
- Vol. 24 (15) , 12470
A Systematic Review on the Continuous Cropping Obstacles and Control Strategies in Medicinal Plants
Continuous cropping (CC) is a common practice in agriculture, and usually causes serious economic losses due to soil degeneration, decreased crop yield and quality, and increased disease incidence, especially in medicinal plants. Continuous cropping obstacles (CCOs) are mainly due to changes in soil microbial communities, nutrient availability, and allelopathic effects. Recently, progressive studies have illustrated the molecular mechanisms of CCOs, and valid strategies to overcome them. Transcriptomic and metabolomics analyses revealed that identified DEGs (differently expressed genes) and metabolites involved in the response to CCOs are involved in various biological processes, including photosynthesis, carbon metabolism, secondary metabolite biosynthesis, and bioactive compounds. Soil improvement is an effective strategy to overcome this problem. Soil amendments can improve the microbial community by increasing the abundance of beneficial microorganisms, soil fertility, and nutrient availability. In this review, we sum up the recent status of the research on CCOs in medicinal plants, the combination of transcriptomic and metabolomics studies, and related control strategies, including uses of soil amendments, crop rotation, and intercropping. Finally, we propose future research trends for understanding CCOs, and strategies to overcome these obstacles and promote sustainable agriculture practices in medicinal plants.
- 5 August 2023
- Published by MDPI AG in International Journal of Molecular Sciences
- Vol. 24 (15) , 12470
Top Cited PapersOpen AccessA Systematic Review on the Continuous Cropping Obstacles and Control Strategies in Medicinal Plants
Continuous cropping (CC) is a common practice in agriculture, and usually causes serious economic losses due to soil degeneration, decreased crop yield and quality, and increased disease incidence, especially in medicinal plants. Continuous cropping obstacles (CCOs) are mainly due to changes in soil microbial communities, nutrient availability, and allelopathic effects. Recently, progressive studies have illustrated the molecular mechanisms of CCOs, and valid strategies to overcome them. Transcriptomic and metabolomics analyses revealed that identified DEGs (differently expressed genes) and metabolites involved in the response to CCOs are involved in various biological processes, including photosynthesis, carbon metabolism, secondary metabolite biosynthesis, and bioactive compounds. Soil improvement is an effective strategy to overcome this problem. Soil amendments can improve the microbial community by increasing the abundance of beneficial microorganisms, soil fertility, and nutrient availability. In this review, we sum up the recent status of the research on CCOs in medicinal plants, the combination of transcriptomic and metabolomics studies, and related control strategies, including uses of soil amendments, crop rotation, and intercropping. Finally, we propose future research trends for understanding CCOs, and strategies to overcome these obstacles and promote sustainable agriculture practices in medicinal plants.