Yanping Xie

The genus Rhamnus L. (Rhamnaceae) is widely distributed across temperate to tropical regions of eastern and southwestern Asia, southwestern and northern America (Mabberley 1987). This genus compris...

Integrating population genetics with species distribution models provides powerful insights into species' evolutionary trajectories under climatic and geological contexts, and informs evidence‐based conservation strategies for endangered species. In this study, we characterized the population genetic structure of Primula wilsonii , a plant species with extremely small populations (PSESP) endemic to the mountains of Southwest China, to provide insights for the conservation of alpine endangered plants. Double‐digest restriction‐site associated DNA sequencing (ddRAD‐seq) generated 18,313 neutral and unlinked single‐nucleotide polymorphisms (SNPs) from 30 individuals across seven populations. Population genetic analysis revealed that these populations formed two major clusters. All populations exhibited low levels of genetic diversity ( He = 0.00184–0.00271; π = 0.00176–0.00292), with one population (MG1) showing high genetic differentiation ( F _ST > 0.7) from the other populations, possibly reflecting long‐term geographic isolation resulting in a small effective population size ( Ne ). Demographic history analysis indicated an expansion around 0.88 Ma, followed by sustained contraction since approximately 45 ka with low Ne levels maintained. Species distribution models further suggested range contraction from the Last Glacial Maximum to the mid‐Holocene and persistence of suitable refugia in the Hengduan Mountains under future warming scenarios. In conclusion, our results indicated that complex topography and Quaternary climatic oscillations have shaped a hierarchical genetic structure with deeply isolated lineages. We therefore recommend delineating at least three independent management units, consistent with patterns of genetic structure, differentiation, and demographic history. These findings highlight the importance of integrating genetic and environmental evidence in the conservation of P. wilsonii and other PSESPs.

Background: Gynostemma pentaphyllum (Thunb.) Makino is an important medicinal plant within the Cucurbitaceae family. Despite its economic and pharmacological importance, genomic resources for this species remain limited. Methods: We sequenced and assembled the complete mitochondrial genome of G. pentaphyllum. Comparative analyses were conducted to investigate the genomic structure, gene content, RNA editing events, and intracellular gene transfer (IGT) from chloroplasts. Additionally, phylogenomic relationships, synteny, and the selective pressure on mitochondrial genes were evaluated against related species within Cucurbitaceae. Results: The ~324 kb mitogenome has a multipartite architecture of six circular-mapping molecules. It encodes the typical complement of mitochondrial protein-coding genes, tRNAs, and rRNAs found in angiosperms. Extensive C-to-U RNA editing, including events that generate functional start and stop codons, points to substantial post-transcriptional regulation. We also detected multiple chloroplast-derived fragments, including several intact genes, indicating active intracellular gene transfer. Phylogenomic analyses of conserved mitochondrial genes place G. pentaphyllum firmly within Cucurbitaceae, clustering it with Thladiantha cordifolia and Momordica charantia, whereas synteny comparisons reveal pronounced structural rearrangements with respect to these close relatives. While most genes evolve under strong purifying selection, rps1, sdh3, and sdh4 show signatures of accelerated evolution; furthermore, haplotype networks based on conserved loci further corroborate the close affinity with T. cordifolia. Conclusions: This study provides the first high-resolution mitogenome resource for G. pentaphyllum and candidate mitochondrial markers for species authentication, evolutionary studies, and breeding in Gynostemma and related cucurbits.

A new species of Iris , Iris cangshanensis , was discovered in Cangshan Nature Reserve, Dali City, Yunnan Province, China. Morphologically, I. cangshanensis shares several key features with species in Iris subg. Crossiris , including prominent crests and stout rhizomes, but it is easily distinguished from other Iris species by its unique crest, dark purple spots on the falls, erect standards recurved to the style branches, and slightly fimbriate tips of the style branches. Phylogenetic analysis including 115 related species based on matk/trnk and trnL‐F sequences indicates that I. cangshanensis forms a distinct clade, and reveals a strong genetic connection between I. cangshanensis , the Iris tectorum complex and Iris latistyla . Overall, both morphological and phylogenetic evidence strongly support the classification of I. cangshanensis as a newly discovered species. A comprehensive description of this species is provided, including a detailed illustrations and photographs, geographical distribution, habitat and ecology, as well as its IUCN conservation status.

The scarcity of up‐to‐date data on the distribution and dynamics of the Chinese pangolin (Manis pentadactyla) presented a significant challenge in developing effective conservation strategies and implementing protective measures within China. Currently, most of China's national‐level nature reserves and administrative departments operate at the county level, thereby limiting the applicability of larger‐scale analyses and studies for these administrative entities. This study employed 11 widely used modeling techniques created within the Biomod2 framework to predict suitable habitats for the pangolin at the county scale, while examining the correlation between environmental variables and pangolin distribution. The results revealed that highly suitable habitats in Mingxi County of China encompassed only 49 km². Within the county‐managed nature reserve, the proportion of highly suitable habitats reached as high as 52%. However, nearly half of these areas, both moderately and highly suitable habitats, remained inadequately addressed and conserved. We found nine administrative villages that necessitated prioritized conservation efforts. The study anticipated an overall expansion in suitable habitats over the ensuing two decades, with significant growth projected in the eastern regions of Xiayang and Hufang Town. This research offered a clear and applicable research paradigm for the specific administrative level at which China operates, particularly pertinent to county‐level jurisdictions with established nature reserves.

Due to extensive poaching and habitat degradation, the Chinese pangolin (Manis pentadactyla) population had plummeted by approximately 90%, leading the International Union for Conservation of Nature (IUCN) to classify it as a Critically Endangered (CR) species. The scarcity of up-to-date data on the species’ distribution and dynamics presented a significant challenge in developing effective conservation strategies and implementing protective measures within China. This study employed on eleven widely used modeling techniques created within the BIOMOD2 framework to predict suitable habitats for the pangolin at the county scale, while examining the correlation between environmental variables and pangolin distribution. The results revealed that in Mingxi County, situated in the eastern sector of the Wuyi Mountains, the moderately suitable habitat spanned 260 km², accounting for 15% of the total area, whereas the highly suitable habitat encompassed only 49 km², constituting 3% of the total area. Within the county-managed nature reserve, the proportion of highly suitable habitats reached as high as 52%. However, nearly half of these areas, both moderately and highly suitable, remained inadequately addressed and conserved. The findings underscored the inadequacy of existing protected areas in sustaining the current pangolin population, leading to the identification of nine administrative villages that necessitated prioritized conservation efforts. The study anticipated an overall expansion in suitable habitats over the ensuing two decades, likely associated with an increase in precipitation, with significant growth projected in the eastern regions of Xiayang Township and Hufang Town. This research offered a clear and applicable research paradigm for the specific administrative level at which China operates, particularly pertinent to county-level jurisdictions with established nature reserve. In order to more precisely evaluate the pangolin’s situation at the county scale, the study underscored the paramount importance of conducting field surveys, deemed as the most urgent task at the time.

Disclosures. Zhu:Miltenyi Biotec: Ended employment in the past 24 months. Dropulic:Vector BioMed: Current Employment. Orentas:Vector BioMed: Research Funding; U

Primula, well known for its heterostyly, is the largest genus in the family Primulaceae with more than 500 species. The considerable species number has introduced a huge challenge for taxonomy. The phylogenetic relationships among Primula still maintain unresolved due to frequent hybridization and introgression between closely related species. In this study, we sequenced and assembled the complete chloroplast genomes of Primula wilsonii Dunn, which is a PSESP (plant species with extremely small populations), using Illumina sequencing and compared its genomic sequences with those of four related Primula species. The chloroplast genomes of Primula species were similar in the basic structure, gene order, and GC content. The detected 38 SSRs (simple sequence repeats) loci and 17 hypervariable regions had many similarities in P. wilsonii, P. anisodora, P. miyabeana, and P. poissonii, but showed a significant difference compared with those in P. secundiflora. Slight variations were observed among Primula chloroplast genomes, in consideration of the relatively stable patterns of IR (inverted repeats) contraction and expansion. Phylogenetic analysis based on chloroplast genomes and protein‐coding genes confirmed three major clades in Chinese Primula, but the infrageneric sections were not in accordance with morphological traits. The P. poissonii complex was confirmed here and P. anisodora was the most closely related species to P. wilsonii. Overall, the chloroplast genome sequences provided useful genetic and evolutionary information for phylogeny and population genetics on Chinese Primula species.

Understanding the roles of ecological drivers in shaping biodiversity is fundamental for conservation practice. In this study, we explored the effects of elevation, conservation status, primary productivity, habitat diversity and anthropogenic disturbance (represented by human population density and birding history) on taxonomic, phylogenetic and functional avian diversity in a subtropical landscape in southeastern China. We conducted bird surveys using 1‐km transects across a total of 30 sites, of which 10 sites were located within a natural reserve. Metrics of functional diversity were calculated based on six functional traits (body mass, clutch size, dispersal ratio, sociality, diet and foraging stratum). We built simultaneous autoregression models to assess the association between the ecological factors and diversity of the local avian communities. Local avian diversity generally increased with increasing habitat diversity, human population density and primary productivity. We also detected phylogenetic and functional clustering in these communities, suggesting that the avian assemblages were structured mainly by environmental filtering, rather than interspecific competition. Compared with sites outside the natural reserve, sites within the natural reserve had relatively lower avian diversity but a higher level of phylogenetic heterogeneity.