Current Organizations / Institutes

The organizations/institutes from the scholar's latest article


Lisa Anita De Santi has a total of 49 co-authors. Here are the top co-authors by number of shared publications:


Latest Publications

  • Reject Option for Medical Image Classification Using CNN-Derived Latent-Space Neighbourhood Analysis

    by Andrea Arcangeli, Lisa Anita De Santi, Maria Filomena Santarelli, Simona Celi, Vincenzo Positano

    Reliable uncertainty estimation is a key requirement for the clinical adoption of convolutional neural networks (CNNs) in biomedical imaging. We propose a reject option framework that assesses prediction reliability by leveraging the local structure of the latent space. The method is based on three latent-space features: Simple Data Point Target Density (\(\varvec{DPTD}_{\varvec{S}}\)), defined as the proportion of a sample’s nearest neighbours sharing its label, a distance-weighted extension (\(\varvec{DPTD}_{\varvec{W}}\)), and the \(\varvec{k}^{\varvec{*}}\) value. These metrics characterise local label agreement and intra-class consistency without relying on explicit parametric assumptions. A logistic regression rejector is trained post hoc using features derived from the latent representations of the base CNN. Experiments were conducted on two public neuroimaging datasets: ADNI (FDG-PET for Alzheimer’s disease) and PPMI (DaTSCAN SPECT for Parkinson’s disease). Using all three latent-space features, the rejector achieved AUC-ROC values of 0.843 (95% CI: 0.809–0.874) on ADNI and 0.884 (95% CI: 0.867–0.900) on PPMI, with corresponding eAURC values of 0.0278 (95% CI: 0.0193–0.0370) and 0.0169 (95% CI: 0.0133–0.0209), respectively. For the full-feature configuration, no significant difference from maximum softmax probability (MSP) was detected on ADNI for either AUC-ROC or eAURC, whereas MSP performed significantly better on PPMI for both metrics. The proposed framework provides a representation-based mechanism to assess prediction reliability through local latent-space structure. As a post-hoc approach, it can be integrated into existing CNN pipelines without modifying the underlying model, offering a practical tool for uncertainty-aware decision support in biomedical imaging.

  • Open Access

    Explainable Survival Analysis of Censored Clinical Data Using a Neural Network Approach

    by Lisa Anita De Santi, Francesca Orlandini, Vincenzo Positano, Laura Pistoia, Francesco Sorrentino, Giuseppe Messina, Maria Grazia Roberti, Massimiliano Missere, Nicolò Schicchi, Antonino Vallone, et al.

    Survival analysis is a statistical approach widely employed to model the time of an event, such as a patient’s death. Classical approaches include the Kaplan–Meier estimator and Cox proportional hazards regression, which assume a linear relationship between the model’s covariates. However, the linearity assumption might pose challenges with high-dimensional data, thus stimulating interest in performing survival analysis using neural network models. In the present work, we implemented a deep Cox neural network (Cox-net) to predict the time of a cardiac event using patient data collected from the Myocardial Iron Overload in Thalassemia (MIOT) project. Cox-net achieved a concordance index (c-index) of 0.812 ± 0.036, outperforming the classical Cox regression (0.790 ± 0.040), and it demonstrated resilience to varying levels of censored patients. A permutation feature importance analysis identified fibrosis and sex as the most significant predictors, aligning with clinical knowledge. Cox-net was able to represent the nonlinear relationships between covariates and maintain reliable survival curve predictions in datasets with a large number of censored patients, making it a promising tool for determining the appropriate clinical pathway for thalassemic patients.


  • PIPNet3D: Interpretable Detection of Alzheimer in MRI Scans

    by Lisa Anita De Santi, Jörg Schlötterer, Michael Scheschenja, Joel Wessendorf, Meike Nauta, Vincenzo Positano, Christin Seifert


  • Open Access

    Part-Prototype Models in Medical Imaging: Applications and Current Challenges

    by Lisa Anita De Santi, Franco Italo Piparo, Filippo Bargagna, Maria Filomena Santarelli, Simona Celi, Vincenzo Positano

    Recent developments in Artificial Intelligence have increasingly focused on explainability research. The potential of Explainable Artificial Intelligence (XAI) in producing trustworthy computer-aided diagnosis systems and its usage for knowledge discovery are gaining interest in the medical imaging (MI) community to support the diagnostic process and the discovery of image biomarkers. Most of the existing XAI applications in MI are focused on interpreting the predictions made using deep neural networks, typically including attribution techniques with saliency map approaches and other feature visualization methods. However, these are often criticized for providing incorrect and incomplete representations of the black-box models’ behaviour. This highlights the importance of proposing models intentionally designed to be self-explanatory. In particular, part-prototype (PP) models are interpretable-by-design computer vision (CV) models that base their decision process on learning and identifying representative prototypical parts from input images, and they are gaining increasing interest and results in MI applications. However, the medical field has unique characteristics that could benefit from more advanced implementations of these types of architectures. This narrative review summarizes existing PP networks, their application in MI analysis, and current challenges.


  • Open Access

    Part-Prototypes Models in Medical Imaging: Applications and Current Challenges

    by Lisa Anita De Santi, Franco Italo Piparo, Filippo Bargagna, Maria Filomena Santarelli, Simona Celi, Vincenzo Positano

    The last wave of Artificial Intelligence is dedicating particular emphasis to the line of explainability research. The potential of Explainable Artificial Intelligence (XAI) in producing trustworthy computer-aided-diagnosis systems and its usage for knowledge discovery are collecting interest in the Medical Imaging (MI) community to support the diagnostic process and the discovery of image biomarkers. Most of the existing XAI applications in MI were focused on interpreting the predictions returned by deep neural networks, typically including attribution techniques with saliency map approaches and other feature visualization methods. However, these are often criticized for providing incorrect and incomplete representations of the black-box models’ behaviour. This raises the attention in proposing models intentionally designed to be self-explanatory. In particular, part-prototype (PP) models are interpretable-by-design computer vision (CV) models that base their decision process in learning and identifying representative prototypical parts from the input images, and they are collecting increasing interest and results in MI applications. This narrative review provides a summary of existing PP networks, their application in MI analysis and current challenges.

  • Explainable CNN-Based Cardiac Amyloidosis Classification from PET Images Through Manifold Learning

    by Lisa Anita De Santi, Filippo Bargagna, Maria Filomena Santarelli, Giuseppe Vergaro, Dario Genovesi, Michele Emdin, Assuero Giorgetti, Vincenzo Positano

  • Open Access

    Review of: "An Improved Hybrid Transfer Learning-Based Deep Learning Model for Alzheimer’s Disease Detection Using CT and MRI Scans"

    by Lisa Anita De Santi

    Authors applied a DL Despite the problem tackled is relevant from a clinical perspectives several limitations can be recognized: * Authors presented their work as_ “… Hybrid Transfer Learning-Based … Using CT and MRI Scans”_, but in the section d...

  • Evaluating Explanations of an Alzheimer’s Disease 18F-FDG Brain PET Black-Box Classifier

    by Lisa Anita De Santi, Filippo Bargagna, Maria Filomena Santarelli, Vincenzo Positano

  • Open Access

    Review of: "Deep Learning Modeling for Prediction of Cognitive Task Related Features from Resting-state fMRI Data"

    by Lisa Anita De Santi

    * Authors stated _“Studies predicting cognitive test scores from resting-state fMRI (rs-fMRI) are less common…”_, I believe that the current research gap tackled could be specified more clearly, e.g. stating if this is the first study that deals wit...

  • Open Access

    Left Ventricle Detection from Cardiac Magnetic Resonance Relaxometry Images Using Visual Transformer

    by Lisa Anita De Santi, Antonella Meloni, Maria Filomena Santarelli, Laura Pistoia, Anna Spasiano, Tommaso Casini, Maria Caterina Putti, Liana Cuccia, Filippo Cademartiri, Vincenzo Positano

    Left Ventricle (LV) detection from Cardiac Magnetic Resonance (CMR) imaging is a fundamental step, preliminary to myocardium segmentation and characterization. This paper focuses on the application of a Visual Transformer (ViT), a novel neural network architecture, to automatically detect LV from CMR relaxometry sequences. We implemented an object detector based on the ViT model to identify LV from CMR multi-echo T2* sequences. We evaluated performances differentiated by slice location according to the American Heart Association model using 5-fold cross-validation and on an independent dataset of CMR T2*, T2, and T1 acquisitions. To the best of our knowledge, this is the first attempt to localize LV from relaxometry sequences and the first application of ViT for LV detection. We collected an Intersection over Union (IoU) index of 0.68 and a Correct Identification Rate (CIR) of blood pool centroid of 0.99, comparable with other state-of-the-art methods. IoU and CIR values were significantly lower in apical slices. No significant differences in performances were assessed on independent T2* dataset (IoU = 0.68, p = 0.405; CIR = 0.94, p = 0.066). Performances were significantly worse on the T2 and T1 independent datasets (T2: IoU = 0.62, CIR = 0.95; T1: IoU = 0.67, CIR = 0.98), but still encouraging considering the different types of acquisition. This study confirms the feasibility of the application of ViT architectures in LV detection and defines a benchmark for relaxometry imaging.