Zi-Yan Liu
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Zi-Yan Liu has a total of 68 co-authors. Here are the top co-authors by number of shared publications:
- Yun-Zhang Sun
Fisheries College, Jimei University, Xiamen 361021, China
15 shared publications Hong-Ling Yang
State Key Laboratory of Mariculture Breeding, Fisheries College of Jimei University, Xiamen, 361021, China
14 shared publicationsJi-Dan Ye
8 shared publicationsGuo-He Cai
State Key Laboratory of Mariculture Breeding, Fisheries College of Jimei University, Xiamen, 361021, China
7 shared publicationsChun-Xiao Zhang
6 shared publicationsXiao-Zheng Yu
College of Biological and Environmental Engineering, Zhejiang international Joint Laboratory on Low-Carbon Pollution Control and Resource utilization, Zhejiang Shuren University, Hangzhou, 310015, China
6 shared publications
Latest Publications
- Open Access
Resveratrol as a Bioactive Compound for Edible Fish Muscle Quality: Emerging Evidence, Putative Mechanisms, and Future Perspectives
Resveratrol is a plant-derived stilbene polyphenol that has attracted interest as a potential dietary additive for improving edible fish muscle quality. This review summarizes current evidence on pre-harvest dietary resveratrol supplementation and its possible effects on nutritional composition, flavor-related biochemical traits, and physicochemical quality of fish muscle or fillets. We distinguish nutritional quality, including proximate composition, amino-acid profiles, and fatty-acid composition, from flavor-related and sensory-relevant proxies, such as free amino acids, inosine monophosphate, volatile precursors, color, pH, water-holding capacity, and texture. Direct evidence from edible fish muscle remains limited and fragmented, and most available studies rely on biochemical or instrumental endpoints rather than trained-panel sensory evaluation or consumer acceptance testing. Reported effects suggest species- and dose-dependent changes in muscle protein deposition, amino-acid accumulation, fatty-acid composition, pH, cooking or drip loss, and texture-related traits. Putative mechanisms may involve antioxidant protection, muscle fiber remodeling, lipid metabolism, endoplasmic-reticulum stress, and delivery-dependent bioavailability; however, many mechanistic links are still inferred from hepatic tissues, mammalian models, or in vitro systems. Future studies should combine standardized dose–response feeding trials with gas chromatography–mass spectrometry (GC–MS)-based volatile profiling, lipid and protein oxidation indices, instrumental texture analysis, sensory evaluation, and shelf-life testing before resveratrol can be recommended as a robust feed-based strategy for improving edible fish muscle quality.
Open AccessResveratrol as a Bioactive Compound for Edible Fish Muscle Quality: Emerging Evidence, Putative Mechanisms, and Future Perspectives
Resveratrol is a plant-derived stilbene polyphenol that has attracted interest as a potential dietary additive for improving edible fish muscle quality. This review summarizes current evidence on pre-harvest dietary resveratrol supplementation and its possible effects on nutritional composition, flavor-related biochemical traits, and physicochemical quality of fish muscle or fillets. We distinguish nutritional quality, including proximate composition, amino-acid profiles, and fatty-acid composition, from flavor-related and sensory-relevant proxies, such as free amino acids, inosine monophosphate, volatile precursors, color, pH, water-holding capacity, and texture. Direct evidence from edible fish muscle remains limited and fragmented, and most available studies rely on biochemical or instrumental endpoints rather than trained-panel sensory evaluation or consumer acceptance testing. Reported effects suggest species- and dose-dependent changes in muscle protein deposition, amino-acid accumulation, fatty-acid composition, pH, cooking or drip loss, and texture-related traits. Putative mechanisms may involve antioxidant protection, muscle fiber remodeling, lipid metabolism, endoplasmic-reticulum stress, and delivery-dependent bioavailability; however, many mechanistic links are still inferred from hepatic tissues, mammalian models, or in vitro systems. Future studies should combine standardized dose–response feeding trials with gas chromatography–mass spectrometry (GC–MS)-based volatile profiling, lipid and protein oxidation indices, instrumental texture analysis, sensory evaluation, and shelf-life testing before resveratrol can be recommended as a robust feed-based strategy for improving edible fish muscle quality.
- 28 May 2026
- Published by Springer Nature in Applied Biochemistry and Biotechnology
- Vol. 198 (9) , 6279-6303
Engineering Bacillus Subtilis for Efficient Biosynthesis of Riboflavin: Current Knowledge and Future Perspectives
Riboflavin is an essential water-soluble vitamin that serves as a precursor for the biosynthesis of the flavin cofactors FMN and FAD, which play pivotal roles in numerous redox and energy metabolism reactions. With the growing global demand for sustainable vitamin production, microbial fermentation has become an attractive alternative to chemical synthesis due to its environmental and economic advantages. Among microbial hosts, Bacillus subtilis has emerged as a leading cell factory for riboflavin production owing to its GRAS status, well-characterized genetics, and efficient protein secretion system. This review provides a comprehensive overview of recent advances in metabolic engineering strategies to enhance riboflavin biosynthesis in B. subtilis. Key topics include strengthening biosynthetic and precursor pathways, relieving feedback inhibition, balancing metabolic flux and cell growth, employing adaptive laboratory evolution, and utilizing omics-guided optimization and 13C metabolic flux analysis. Moreover, the integration of synthetic biology tools such as riboswitch engineering, regulatory element design, and high-throughput screening has significantly accelerated strain improvement. Despite remarkable progress, challenges remain in achieving precise regulatory control, optimizing multi-gene expression, and enhancing genome integration efficiency. Future research combining multi-omics data, synthetic regulatory design, and machine learning-driven predictive modeling is expected to further advance the development of intelligent B. subtilis cell factories. However, the practical implementation of these systems remains constrained by the metabolic burden of overproduction and the lack of universal regulatory models that can predict strain performance across varying industrial scales.
- 28 May 2026
- Published by Springer Nature in Applied Biochemistry and Biotechnology
- Vol. 198 (9) , 6279-6303
Engineering Bacillus Subtilis for Efficient Biosynthesis of Riboflavin: Current Knowledge and Future Perspectives
Riboflavin is an essential water-soluble vitamin that serves as a precursor for the biosynthesis of the flavin cofactors FMN and FAD, which play pivotal roles in numerous redox and energy metabolism reactions. With the growing global demand for sustainable vitamin production, microbial fermentation has become an attractive alternative to chemical synthesis due to its environmental and economic advantages. Among microbial hosts, Bacillus subtilis has emerged as a leading cell factory for riboflavin production owing to its GRAS status, well-characterized genetics, and efficient protein secretion system. This review provides a comprehensive overview of recent advances in metabolic engineering strategies to enhance riboflavin biosynthesis in B. subtilis. Key topics include strengthening biosynthetic and precursor pathways, relieving feedback inhibition, balancing metabolic flux and cell growth, employing adaptive laboratory evolution, and utilizing omics-guided optimization and 13C metabolic flux analysis. Moreover, the integration of synthetic biology tools such as riboswitch engineering, regulatory element design, and high-throughput screening has significantly accelerated strain improvement. Despite remarkable progress, challenges remain in achieving precise regulatory control, optimizing multi-gene expression, and enhancing genome integration efficiency. Future research combining multi-omics data, synthetic regulatory design, and machine learning-driven predictive modeling is expected to further advance the development of intelligent B. subtilis cell factories. However, the practical implementation of these systems remains constrained by the metabolic burden of overproduction and the lack of universal regulatory models that can predict strain performance across varying industrial scales.
- 30 March 2026
- Published by Springer Nature in World Journal of Microbiology and Biotechnology
- Vol. 42 (4)
Advances in metabolic engineering of Bacillus subtilis towards high-efficiency cytidine biosynthesis
- 30 March 2026
- Published by Springer Nature in World Journal of Microbiology and Biotechnology
- Vol. 42 (4)
Advances in metabolic engineering of Bacillus subtilis towards high-efficiency cytidine biosynthesis
- 16 March 2026
- Published by Springer Nature in Probiotics and Antimicrobial Proteins
- Vol. 18 (6) , 1-17
Progress on the Mechanisms of Probiotics in Mitigating Ammonia Nitrogen Stress and Their Application in Fish
- 16 March 2026
- Published by Springer Nature in Probiotics and Antimicrobial Proteins
- Vol. 18 (6) , 1-17
Progress on the Mechanisms of Probiotics in Mitigating Ammonia Nitrogen Stress and Their Application in Fish
- 9 March 2026
- Published by Springer Nature in Current Microbiology
- Vol. 83 (4) , 235
Formulated Diet Instead of Chilled Fish Is Beneficial to Microbial and Water Quality in Mandarin Fish (Siniperca chuatsi) Ponds
The Mandarin fish (Siniperca chuatsi) is a valuable carnivorous species that is traditionally farmed alongside chilled fish. This practice often degrades water quality and threatens sustainability. In this study, pond environments under two feeding regimes, including chilled fish (CF) and formulated diet (FD), were compared through water quality assessment and high-throughput sequencing of both bacterial and microeukaryotic communities. The FD group exhibited significantly lower concentrations of ammonia nitrogen, nitrite, phosphate, and salinity, alongside distinct microbial assemblages. Bacterial communities in FD ponds were enriched with Proteobacteria and Bacteroidota, whereas CF ponds contained higher abundances of Actinobacteriota and Cyanobacteria. Microeukaryotic communities shifted toward Cryptomonas dominance in FD ponds, while CF supported more chlorophyte- and ciliate-associated taxa. Network analysis further revealed that FD promoted more integrated and resilient microeukaryotic interactions. Collectively, these findings demonstrate that formulated diets were conducive to keep water quality and restructure microbial communities, highlighting their potential as a sustainable feeding strategy to enhance ecological stability and reduce disease risk in aquaculture ponds.
- 9 March 2026
- Published by Springer Nature in Current Microbiology
- Vol. 83 (4) , 235
Formulated Diet Instead of Chilled Fish Is Beneficial to Microbial and Water Quality in Mandarin Fish (Siniperca chuatsi) Ponds
The Mandarin fish (Siniperca chuatsi) is a valuable carnivorous species that is traditionally farmed alongside chilled fish. This practice often degrades water quality and threatens sustainability. In this study, pond environments under two feeding regimes, including chilled fish (CF) and formulated diet (FD), were compared through water quality assessment and high-throughput sequencing of both bacterial and microeukaryotic communities. The FD group exhibited significantly lower concentrations of ammonia nitrogen, nitrite, phosphate, and salinity, alongside distinct microbial assemblages. Bacterial communities in FD ponds were enriched with Proteobacteria and Bacteroidota, whereas CF ponds contained higher abundances of Actinobacteriota and Cyanobacteria. Microeukaryotic communities shifted toward Cryptomonas dominance in FD ponds, while CF supported more chlorophyte- and ciliate-associated taxa. Network analysis further revealed that FD promoted more integrated and resilient microeukaryotic interactions. Collectively, these findings demonstrate that formulated diets were conducive to keep water quality and restructure microbial communities, highlighting their potential as a sustainable feeding strategy to enhance ecological stability and reduce disease risk in aquaculture ponds.
- 18 February 2026
- Published by Elsevier in Comparative Biochemistry and Physiology Part C: Toxicology & Pharmacology
- Vol. 304, 110487
Advances in response mechanisms of fish to ammonia stress: A review
- 18 February 2026
- Published by Elsevier in Comparative Biochemistry and Physiology Part C: Toxicology & Pharmacology
- Vol. 304, 110487
Advances in response mechanisms of fish to ammonia stress: A review
- Open Access
- 13 February 2026
- Published by Walter de Gruyter GmbH in Annals of Animal Science
A comprehensive review of classification, mechanisms, application and future prospects for antimicrobial peptides
Antimicrobial peptides (AMPs) represent a versatile and innovative class of biomolecules with unique mechanisms of action, including membrane disruption, immunomodulation, and multi-target synergy, positioning them as promising alternatives to conventional antibiotics in combating drug-resistant pathogens. Their broad-spectrum activity and low resistance development have enabled transformative applications across medicine, agriculture, and food industries. In healthcare, AMPs show potential in treating multidrug-resistant infections and eradicating biofilms, while their role as natural preservatives extends food shelf life by targeting spoilage microorganisms. Agricultural advancements include transgenic crops expressing AMPs for disease resistance and livestock feed additives enhancing immune responses. Emerging technologies such as AI-driven peptide design, nanotechnology-based delivery systems, and CRISPR-engineered production platforms are addressing challenges in stability, scalability, and targeted action. Despite these strides, hurdles remain in large-scale synthesis, cost-effectiveness, and clinical translation. Collaborative efforts integrating computational biology, material science, and regulatory frameworks will be pivotal in harnessing AMPs’ full potential, offering sustainable solutions to global health crises, food security challenges, and antimicrobial resistance in the post-antibiotic era.
- 13 February 2026
- Published by Walter de Gruyter GmbH in Annals of Animal Science
Open AccessA comprehensive review of classification, mechanisms, application and future prospects for antimicrobial peptides
Antimicrobial peptides (AMPs) represent a versatile and innovative class of biomolecules with unique mechanisms of action, including membrane disruption, immunomodulation, and multi-target synergy, positioning them as promising alternatives to conventional antibiotics in combating drug-resistant pathogens. Their broad-spectrum activity and low resistance development have enabled transformative applications across medicine, agriculture, and food industries. In healthcare, AMPs show potential in treating multidrug-resistant infections and eradicating biofilms, while their role as natural preservatives extends food shelf life by targeting spoilage microorganisms. Agricultural advancements include transgenic crops expressing AMPs for disease resistance and livestock feed additives enhancing immune responses. Emerging technologies such as AI-driven peptide design, nanotechnology-based delivery systems, and CRISPR-engineered production platforms are addressing challenges in stability, scalability, and targeted action. Despite these strides, hurdles remain in large-scale synthesis, cost-effectiveness, and clinical translation. Collaborative efforts integrating computational biology, material science, and regulatory frameworks will be pivotal in harnessing AMPs’ full potential, offering sustainable solutions to global health crises, food security challenges, and antimicrobial resistance in the post-antibiotic era.