Tiago Oliveira
Research Subjects
Tiago Oliveira has a total of 10 co-authors. Here are the top co-authors by number of shared publications:
- Luís Rosado
Fraunhofer Portugal AICOS, Porto, Portugal
2 shared publications - Ana Filipa Sampaio
Fraunhofer Portugal AICOS
1 shared publication - Carlos Soares
Faculdade de Engenharia da Universidade do Porto
1 shared publication - Cristiana Braga
Fraunhofer Portugal AICOS, 4200-135 Porto, Portugal
1 shared publication - Eduardo Silva
Fraunhofer Portugal AICOS, 4200-135 Porto, Portugal
1 shared publication - Filipe Soares
Fraunhofer Portugal AICOS, Rua Alfredo Allen 455/461, 4200-135 Porto, Portugal
1 shared publication
Latest Publications
- Open Access
- 24 October 2023
- Published by MDPI AG in Applied Sciences
- Vol. 13 (21) , 11620
Federated Learning for Computer-Aided Diagnosis of Glaucoma Using Retinal Fundus Images
Deep learning approaches require a large amount of data to be transferred to centralized entities. However, this is often not a feasible option in healthcare, as it raises privacy concerns over sharing sensitive information. Federated Learning (FL) aims to address this issue by allowing machine learning without transferring the data to a centralized entity. FL has shown great potential to ensure privacy in digital healthcare while maintaining performance. Despite this, there is a lack of research on the impact of different types of data heterogeneity on the results. In this study, we research the robustness of various FL strategies on different data distributions and data quality for glaucoma diagnosis using retinal fundus images. We use RetinaQualEvaluator to generate quality labels for the datasets and then a data distributor to achieve our desired distributions. Finally, we evaluate the performance of the different strategies on local data and an independent test dataset. We observe that federated learning shows the potential to enable high-performance models without compromising sensitive data. Furthermore, we infer that FedProx is more suitable to scenarios where the distributions and quality of the data of the participating clients is diverse with less communication cost.
- 24 October 2023
- Published by MDPI AG in Applied Sciences
- Vol. 13 (21) , 11620
Open AccessFederated Learning for Computer-Aided Diagnosis of Glaucoma Using Retinal Fundus Images
Deep learning approaches require a large amount of data to be transferred to centralized entities. However, this is often not a feasible option in healthcare, as it raises privacy concerns over sharing sensitive information. Federated Learning (FL) aims to address this issue by allowing machine learning without transferring the data to a centralized entity. FL has shown great potential to ensure privacy in digital healthcare while maintaining performance. Despite this, there is a lack of research on the impact of different types of data heterogeneity on the results. In this study, we research the robustness of various FL strategies on different data distributions and data quality for glaucoma diagnosis using retinal fundus images. We use RetinaQualEvaluator to generate quality labels for the datasets and then a data distributor to achieve our desired distributions. Finally, we evaluate the performance of the different strategies on local data and an independent test dataset. We observe that federated learning shows the potential to enable high-performance models without compromising sensitive data. Furthermore, we infer that FedProx is more suitable to scenarios where the distributions and quality of the data of the participating clients is diverse with less communication cost.
- Open Access
- 31 August 2023
- Published by MDPI AG in Applied Sciences
- Vol. 13 (17) , 9850
Improving Mobile-Based Cervical Cytology Screening: A Deep Learning Nucleus-Based Approach for Lesion Detection
Liquid-based cytology (LBC) plays a crucial role in the effective early detection of cervical cancer, contributing to substantially decreasing mortality rates. However, the visual examination of microscopic slides is a challenging, time-consuming, and ambiguous task. Shortages of specialized staff and equipment are increasing the interest in developing artificial intelligence (AI)-powered portable solutions to support screening programs. This paper presents a novel approach based on a RetinaNet model with a ResNet50 backbone to detect the nuclei of cervical lesions on mobile-acquired microscopic images of cytology samples, stratifying the lesions according to The Bethesda System (TBS) guidelines. This work was supported by a new dataset of images from LBC samples digitalized with a portable smartphone-based microscope, encompassing nucleus annotations of 31,698 normal squamous cells and 1395 lesions. Several experiments were conducted to optimize the model’s detection performance, namely hyperparameter tuning, transfer learning, detected class adjustments, and per-class score threshold optimization. The proposed nucleus-based methodology improved the best baseline reported in the literature for detecting cervical lesions on microscopic images exclusively acquired with mobile devices coupled to the µSmartScope prototype, with per-class average precision, recall, and F1 scores up to 17.6%, 22.9%, and 16.0%, respectively. Performance improvements were obtained by transferring knowledge from networks pre-trained on a smaller dataset closer to the target application domain, as well as including normal squamous nuclei as a class detected by the model. Per-class tuning of the score threshold also allowed us to obtain a model more suitable to support screening procedures, achieving F1 score improvements in most TBS classes. While further improvements are still required to use the proposed approach in a clinical context, this work reinforces the potential of using AI-powered mobile-based solutions to support cervical cancer screening. Such solutions can significantly impact screening programs worldwide, particularly in areas with limited access and restricted healthcare resources.
- 31 August 2023
- Published by MDPI AG in Applied Sciences
- Vol. 13 (17) , 9850
Open AccessImproving Mobile-Based Cervical Cytology Screening: A Deep Learning Nucleus-Based Approach for Lesion Detection
Liquid-based cytology (LBC) plays a crucial role in the effective early detection of cervical cancer, contributing to substantially decreasing mortality rates. However, the visual examination of microscopic slides is a challenging, time-consuming, and ambiguous task. Shortages of specialized staff and equipment are increasing the interest in developing artificial intelligence (AI)-powered portable solutions to support screening programs. This paper presents a novel approach based on a RetinaNet model with a ResNet50 backbone to detect the nuclei of cervical lesions on mobile-acquired microscopic images of cytology samples, stratifying the lesions according to The Bethesda System (TBS) guidelines. This work was supported by a new dataset of images from LBC samples digitalized with a portable smartphone-based microscope, encompassing nucleus annotations of 31,698 normal squamous cells and 1395 lesions. Several experiments were conducted to optimize the model’s detection performance, namely hyperparameter tuning, transfer learning, detected class adjustments, and per-class score threshold optimization. The proposed nucleus-based methodology improved the best baseline reported in the literature for detecting cervical lesions on microscopic images exclusively acquired with mobile devices coupled to the µSmartScope prototype, with per-class average precision, recall, and F1 scores up to 17.6%, 22.9%, and 16.0%, respectively. Performance improvements were obtained by transferring knowledge from networks pre-trained on a smaller dataset closer to the target application domain, as well as including normal squamous nuclei as a class detected by the model. Per-class tuning of the score threshold also allowed us to obtain a model more suitable to support screening procedures, achieving F1 score improvements in most TBS classes. While further improvements are still required to use the proposed approach in a clinical context, this work reinforces the potential of using AI-powered mobile-based solutions to support cervical cancer screening. Such solutions can significantly impact screening programs worldwide, particularly in areas with limited access and restricted healthcare resources.
- Open Access
- 20 September 2022
- Published by MDPI AG in Applied Sciences
- Vol. 12 (19) , 9423
XAI Systems Evaluation: A Review of Human and Computer-Centred Methods
The lack of transparency of powerful Machine Learning systems paired with their growth in popularity over the last decade led to the emergence of the eXplainable Artificial Intelligence (XAI) field. Instead of focusing solely on obtaining highly performing models, researchers also develop explanation techniques that help better understand the system’s reasoning for a particular output. An explainable system can be designed, developed, and evaluated from different perspectives, which enables researchers from different disciplines to work together on this topic. However, the multidisciplinary nature of XAI systems creates new challenges for condensing and structuring adequate methodologies to design and evaluate such systems. This paper presents a survey of Human-centred and Computer-centred methods to evaluate XAI systems. We propose a new taxonomy to categorize XAI evaluation methods more clearly and intuitively. This categorization gathers knowledge from different disciplines and organizes the evaluation methods according to a set of categories that represent key properties of XAI systems. Possible ways to use the proposed taxonomy in the design and evaluation of XAI systems are also discussed, alongside with some concluding remarks and future directions of research.
- 20 September 2022
- Published by MDPI AG in Applied Sciences
- Vol. 12 (19) , 9423
Open AccessXAI Systems Evaluation: A Review of Human and Computer-Centred Methods
The lack of transparency of powerful Machine Learning systems paired with their growth in popularity over the last decade led to the emergence of the eXplainable Artificial Intelligence (XAI) field. Instead of focusing solely on obtaining highly performing models, researchers also develop explanation techniques that help better understand the system’s reasoning for a particular output. An explainable system can be designed, developed, and evaluated from different perspectives, which enables researchers from different disciplines to work together on this topic. However, the multidisciplinary nature of XAI systems creates new challenges for condensing and structuring adequate methodologies to design and evaluate such systems. This paper presents a survey of Human-centred and Computer-centred methods to evaluate XAI systems. We propose a new taxonomy to categorize XAI evaluation methods more clearly and intuitively. This categorization gathers knowledge from different disciplines and organizes the evaluation methods according to a set of categories that represent key properties of XAI systems. Possible ways to use the proposed taxonomy in the design and evaluation of XAI systems are also discussed, alongside with some concluding remarks and future directions of research.