Patrick K. Malonza

Discoveries of new species can greatly impact our understanding of the biogeography of a region. For example, groups of amphibian lineages restricted to the Afrotemperate forests of Tanzania and Ethiopia are indicative of a shared biogeographical history of this highly discontinuous ecosystem. Curiously, many of these lineages are absent from the geographically intermediate Kenyan highlands. This phylogeographical interval is generally considered to be attributable to the younger, volcanic origins of much of the Kenyan highlands, and thus an amphibian fauna that is derived largely from recent colonization events rather than comprising older relicts. Contrasting with this view, here we report on the discovery of a single specimen of Bufonidae (true toad) from Mount Kenya. The specimen belongs to a species new to science and deserves recognition at the generic level owing to its notable molecular phylogenetic and morphological divergences from other described taxa. It is most closely related to the Tanzanian genera Churamiti and Nectophrynoides. The discovery of this new toad and its association with Afrotemperate species is significant because it links Kenya to the biogeographically more ancient Tanzanian mountains and supports the potential longevity of the Afrotemperate forests in Kenya. Broadly, it highlights that we are still adding major branches to the phylogeny of anurans.

The genus Cnemaspis as presently construed is polyphyletic, with African, South Asian and Southeast Asian clades each representing independent lineages. The name Ancylodactylus Müller, 1907 is available for the African clade of forest geckos and features previously identified as putatively diagnostic of this group (loss or reduction of the second phalanx of digit IV of manus and pes, as well as a markedly dilated basal portions of the digits) are here regarded as characters supporting the monophyly of Ancylodactylus. Six new species of Ancylodactylus are described: A. kenyaensis sp. nov., A. kituiensis sp. nov., A. mathewsensis sp. nov., A. laikipiensis sp. nov., A. spawlsi sp. nov., and A. chyuluensis sp. nov. on the basis of unique combinations of body size, trunk and tail tubercles, median subcaudal scales, precloacal pores, enlarged subdigital plates, ventral color, and throat color and patterning. Ancylodactylus kenyaensis is among the largest members of the genus, reaching 65 mm SVL, whereas A. spawlsi and A. chyuluensis, with maximum SVLs of 30 mm or less, are the smallest of all members of the genus. All these geckos are chiefly scansorial, occurring on tree trunks, fallen logs and/or in rock outcrops. Ancylodactylus kituiensis and A. mathewsensis occur in isolated dryland hilltop forests surrounded by large tracts of arid lands and are locally abundant in suitable rock outcrops or caves, where they occur in small colonies. Ancylodactylus kenyaensis is a montane forest species found on tree trunks with cracks and crevices, whereas A. spawlsi is a montane forest species found in crevices and beneath loose bark of tree trunks as well as in rock crevices and slabs. Ancylodactylus laikipiensis is likewise both rupicolous and arboreal and A. chyuluensis has been taken only from a pitfall trap in a dry forest patch. All the new species are endemic to relatively small, circumscribed areas within Kenya and all occur within protected areas. At present we consider their IUCN conservation status to be Data Deficient. Herpetological surveys are recommended in other unexplored or under-explored forest areas, particularly hilltop montane forests in isolated dryland rocky hills as these may harbor other undescribed Ancylodactylus species or previously undocumented populations of known species.

The species richness of flora and fauna in the Nzoia River drainage basin is documented through a study of museum specimens, catalogues and databases. The catchment area and basin covers 2.2% (12900/580367 km2) of Kenya's total land area with an altitudinal range of 1140 to 4300 m and varied ecosystem and land uses. We recorded approximately 9.3% (3239/34677) of Kenya's current known species of vascular plants, invertebrates (insects and spiders), fish, amphibians, reptiles, birds and mammals. Bird species made up the highest proportion 58.3% (650/1114) of the national total followed by amphibians 37.3% (41/110), reptiles 45.0% (86/191), mammals 31.3% (122/390), vascular plants 17.9% (1251/7000), fish 6.7% (58/872) (32.2% (58/180) for freshwater fish only) and invertebrates (insects and spiders) 4.1% (1031/25000). Ninety-five species recorded in this area are endemic to Kenya and 42 globally threatened. The species recorded contribute to several ecosystem services including pest control, pollination, bio-indicators, medicine and cosmetics, building materials, ecotourism, research and education. Data available differed substantially across counties and taxon groups with gaps apparent in five counties (Bungoma, Busia, Elgeyo Marakwet, Siaya and Usain Gishu) and four taxa plants, invertebrates, fungi and bacteria where a dearth of information exists. To fill these gaps we recommend prioritisng future survey effort on taxa and counties with fewer than 10% of the total numbers of records.

Kenya has a high diversity of agamid lizards and the arid northern frontier area has the highest species richness. Among the Kenyan agama species, Agama lionotus has the widest distribution, occurring from sea level to inland areas in both dry and moist savanna as well as desert areas. This species mostly prefers rocky areas, both in granitic/metamorphic and volcanic rocks, although it also makes use of tree crevices as well as man-made structures. Recently in Marsabit, northern Kenya, a small-sized agama species, distinct from A. lionotus, was collected within a rocky lava desert area. This new species is characterized by its small size (mean SVL ~83 mm) as compared to typical A. lionotus (mean SVL ~120 mm). Past studies have shown the value of adult male throat coloration for the identification of species within the A. lionotus complex. Herein we also highlight female dorsal color pattern, which is a key character for distinguishing the new species from others in the group, including the similar A. hulbertorum. As in A. lionotus, displaying adult males have an orange to yellow head, a vertebral stripe, a bluish body coloration and an annulated white/blue tail. But the most diagnostic character is the coloration of females and non-displaying males, which exhibit a series of regular pairs of dark spots along the vertebrae as far posterior as the tail base. In addition, females have a pair of elongated orange or yellow marks on the shoulders and another on the dorsolateral margins of the abdomen. This study shows that more cryptic species in the Agama lionotus complex may still await discovery. The new species was found inhabiting dark desert lava rocks but should additionally be present in suitably similar sites in the northern frontier area. This underscores the need to re-examine populations of Agama lionotus from different microhabitats in this country.

A new species of gecko, Lygodactylus tsavoensis sp. nov., is described from Tsavo Conservation Area in southeastern Kenya. It is a member of the Lygodactylus picturatus group and is distinguished from other closely related species by its small size (maximum 35 mm SVL), five postpostmental scales, seven precloacal pores, and a distinctive color pattern. A pale Y-shaped mark on the crown continues along the vertebral midline to the tail base and is flanked by a pair of dark stripes. In addition to its morphological differences, the new species is genetically divergent from its most closely related congeners, L. keniensis and L. wojnowskii. The new species is widespread in the southern and southeastern arid lands within the Tsavo Conservation Area, mainly in Taita-Taveta, Kitui, Makueni, Kajiado, Kilifi, Kwale and Tana River Counties. It is chiefly associated with bushland with short trees, including areas of anthropogenic influence.

The Shimba Hills ecosystem along the south coast of Kenya is a key East African biodiversity hotspot. Historically, it is biogeographically assignable to the East African coastal biome. We examined the current Shimba Hills herpetofauna and their zoogeographical affinities to the coastal forests and nearby Eastern Arc Mountains biodiversity hotspots. The key studied sites included the Shimba Hills National Reserve, forest reserves, Kaya forests, and adjacent private land. Data on herpetofaunal richness were obtained from recent field surveys, literature, and specimens held at the National Museums of Kenya, Herpetology Section Collection, Nairobi. The Makadara, Mwele, and Longo-Mwagandi forests within the Shimba Hills National Reserve hosted the highest number of unique and rare species. Generally, the forest reserves and Kaya forests were important refuges for forest-associated species. On private land, Mukurumudzi Dam riparian areas were the best amphibian habitat and were host to three IUCN (Red List) Endangered-EN amphibian species, namely, Boulengerula changamwensis, Hyperolius rubrovermiculatus, and Afrixalus sylvaticus, as well as one snake species Elapsoidea nigra. Using herpetofauna as zoogeographic indicators, the Shimba Hills were determined to be at a crossroads between the coastal forests (13 endemic species) and the Eastern Arc Mountains (seven endemic species). Most of the Eastern Arc Mountains endemic species were from recent records, and thus more are likely to be found in the future. This 'hybrid' species richness pattern is attributable to the hilly topography of the Shimba Hills and their proximity to the Indian Ocean. This has contributed to the Shimba Hills being the richest herpetofauna area in Kenya, with a total of 89 and 36 reptile and amphibian species, respectively. Because of its unique zoogeography, the Shimba Hills ecosystem is undoubtedly a key biodiversity area for conservation investment.

We present the first annotated amphibian checklist of Shimba Hills National Reserve (SHNR). The list comprises of 30 currently known amphibians (28 anurans and two caecilians), which includes 11 families and 15 genera. In addition, individual records per species, distribution in the reserve and brief remarks about the species are presented. The checklist is based on information from museum collections, field guides, unpublished reports and newly collected field data. We are able to confirm the presence of two Eastern Afromontane species in the SHNR: Scolecomorphus cf. vittatus and Callulina cf. kreffti. The latter has not been recorded since the original collection of a single specimen over 50 years ago. SHNR contains the highest number of amphibian species of any known locality in Kenya (about 30% of the country's total number); therefore it is of national conservation importance. Finally, we briefly discuss the biogeography of the SHNR and its connections to nearby biogeographic regions.

The Sagalla caecilian (Boulengerula niedeni) is an endangered amphibian endemic to Sagalla Hill in the Taita Hills. This burrowing worm-like species prefers soft soil with high moisture and organic matter. The major threats to the Sagalla caecilian are soil erosion caused by steep slopes, bare ground and water siphoning/soil hardening from exotic eucalyptus trees. The purpose of this study was to get a better understanding of the local people’s attitude towards this species and how they can contribute to its continued conservation through restoration of its remaining habitat. In this study, it was found that 96% of Sagalla people are aware of the species, its habits and its association with soils high in organic matter. It was also found that 96% of Sagalla people use organic manure from cow dung in their farms. Habitat restoration through planting of indigenous plants was found to be ongoing, especially on compounds of public institutions as well as on private lands. Although drought was found to be a challenge for seedlings development especially on the low elevation sites, destruction by livestock especially during the dry season is also a major threat. In this study, it was recommended that any future habitat restoration initiative should include strong chain-link fencing to protect the seedlings from livestock activity. Recognizing that the preferred habitats for the species are in the valleys, systematic planting of keystone plant species such as fig trees (Ficus) creates the best microhabitats. These are better than general woodlots of indigenous trees.