Yang Ji
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Yang Ji has a total of 48 co-authors. Here are the top co-authors by number of shared publications:
- Peng George Wang
Department of Pharmacology, School of Medicine, Southern University of Science and Technology, Shenzhen 518055, China
7 shared publications - Dimitri Papukashvili
Department of Pharmacology, School of Medicine, Southern University of Science and Technology, Shenzhen 518000, China
3 shared publications Haojun Li
School of Medicine Southern University of Science and Technology Shenzhen 518055 China
2 shared publicationsMeilan Wei
School of Medicine Southern University of Science and Technology Shenzhen 518055 China
2 shared publications- Nino Rcheulishvili
Department of Pharmacology, School of Medicine, Southern University of Science and Technology, Shenzhen 518000, China
2 shared publications - Qingwen Wang
Department of Rheumatism and Immunology, Peking University Shenzhen Hospital, Shenzhen, China
2 shared publications
Latest Publications
- Open Access
- 14 June 2026
- Published by Elsevier in SSRN Electronic Journal
High-titer and chain-size-tunable heparosan biosynthesis in engineered non-pathogenic Escherichia coli
Heparosan, an unsulfated glycosaminoglycan, is a key precursor for bioengineered heparin. Microbial production provides an animal-free route, but safe chassis with high productivity and controllable molecular weight remain limited. Here, we engineered non-pathogenic Escherichia coli Nissle 1917 for efficient and tunable heparosan biosynthesis. A DE3-type host was first established to support T7-driven expression, followed by coordinated optimization of pathway organization, precursor supply, nucleotide regeneration, and polysaccharide export. Genome and plasmid engineering identified the strain NA3-AKUS+/B3HS2mutM as the best shake-flask producer, yielding 2151 mg/L. For molecular-weight control, the heparosan lyase K5KflA was integrated into the chromosome and tuned with promoters of different strengths, producing an inverse relationship between lyase expression and product molecular weight. The resulting strain NA3-AKUS101A+/B3HS2mutM generated a relatively concentrated product distribution centered at 8434 Da. Fed-batch fermentation further increased total recoverable heparosan to 15.999 g/L in a 5-L bioreactor and 24.769 g/L in a 30-L bioreactor. This study establishes a scalable and biosafe platform for high-level heparosan production with programmable molecular-weight control.
- 14 June 2026
- Published by Elsevier in SSRN Electronic Journal
Open AccessHigh-titer and chain-size-tunable heparosan biosynthesis in engineered non-pathogenic Escherichia coli
Heparosan, an unsulfated glycosaminoglycan, is a key precursor for bioengineered heparin. Microbial production provides an animal-free route, but safe chassis with high productivity and controllable molecular weight remain limited. Here, we engineered non-pathogenic Escherichia coli Nissle 1917 for efficient and tunable heparosan biosynthesis. A DE3-type host was first established to support T7-driven expression, followed by coordinated optimization of pathway organization, precursor supply, nucleotide regeneration, and polysaccharide export. Genome and plasmid engineering identified the strain NA3-AKUS+/B3HS2mutM as the best shake-flask producer, yielding 2151 mg/L. For molecular-weight control, the heparosan lyase K5KflA was integrated into the chromosome and tuned with promoters of different strengths, producing an inverse relationship between lyase expression and product molecular weight. The resulting strain NA3-AKUS101A+/B3HS2mutM generated a relatively concentrated product distribution centered at 8434 Da. Fed-batch fermentation further increased total recoverable heparosan to 15.999 g/L in a 5-L bioreactor and 24.769 g/L in a 30-L bioreactor. This study establishes a scalable and biosafe platform for high-level heparosan production with programmable molecular-weight control.
- 14 March 2026
- Published by Elsevier in Biochemical and Biophysical Research Communications
- Vol. 813, 153594
Development and optimization of human glucocerebrosidase-encoding mRNA for Gaucher disease therapy
- 14 March 2026
- Published by Elsevier in Biochemical and Biophysical Research Communications
- Vol. 813, 153594
Development and optimization of human glucocerebrosidase-encoding mRNA for Gaucher disease therapy
- Open Access
- 29 October 2025
- Published by MDPI AG in Biomolecules
- Vol. 15 (11) , 1522
The Emerging Role of Sialic Acids in Obesity and Diabetes: Molecular Mechanisms and Therapeutic Perspectives
Sialic acids are terminal monosaccharides that cap glycans on glycoconjugates. Accumulating clinical and experimental evidence shows that obesity, insulin resistance, and diabetes are accompanied by changes in sialic-acid levels. In these conditions, the sialic-acid axis is also broadly remodeled: writers (sialyltransferases), erasers (neuraminidases), and readers (Siglecs) are dysregulated across adipose tissue, liver, pancreas, endothelium, and blood, shifting insulin signaling and inflammatory tone. This review summarizes relevant studies from the perspectives of disease clinical indicators, molecular mechanisms, and interventions targeting sialic acid. Taken together, these results confirm that sialic acids and related molecules play important roles in multiple metabolic diseases; however, controversies remain due to differences in glycan structure, isoforms, and tissue specificity, particularly regarding the precise roles of neuraminidases. Future studies should build on advanced, standardized glycomic and glycoproteomic measures to define molecule- and tissue-specific roles of sialic acids in metabolic disease, enabling reliable biomarkers and guiding targeted therapy.
- 29 October 2025
- Published by MDPI AG in Biomolecules
- Vol. 15 (11) , 1522
Open AccessThe Emerging Role of Sialic Acids in Obesity and Diabetes: Molecular Mechanisms and Therapeutic Perspectives
Sialic acids are terminal monosaccharides that cap glycans on glycoconjugates. Accumulating clinical and experimental evidence shows that obesity, insulin resistance, and diabetes are accompanied by changes in sialic-acid levels. In these conditions, the sialic-acid axis is also broadly remodeled: writers (sialyltransferases), erasers (neuraminidases), and readers (Siglecs) are dysregulated across adipose tissue, liver, pancreas, endothelium, and blood, shifting insulin signaling and inflammatory tone. This review summarizes relevant studies from the perspectives of disease clinical indicators, molecular mechanisms, and interventions targeting sialic acid. Taken together, these results confirm that sialic acids and related molecules play important roles in multiple metabolic diseases; however, controversies remain due to differences in glycan structure, isoforms, and tissue specificity, particularly regarding the precise roles of neuraminidases. Future studies should build on advanced, standardized glycomic and glycoproteomic measures to define molecule- and tissue-specific roles of sialic acids in metabolic disease, enabling reliable biomarkers and guiding targeted therapy.
- Open Access
- 19 August 2025
- Published by National Academy of Sciences in Proceedings of the National Academy of Sciences
- Vol. 122 (34)
Loss of sialic acid side-chain O -acetylation exacerbates colitis
Sialic acids (Sias) are a diverse family of nine-carbon backbone monosaccharides occupying terminal positions on cell surface and secreted glycans and are abundant at mucosal surfaces. Sias can be modified with O -acetyl esters on the side chain (C7 to C9) hydroxyls. Structural analysis and functional studies of these modifications are challenging due to chemical lability and variable resistance to sialidases. For in-depth analysis of the expression and functions of O -acetyl Sia modifications, we used a unique set of sialoglycan-recognizing probes, HPLC analysis of DMB-derivatized Sias and mice lacking the first known sialate O -acetyltransferase, CASD1. C7/C9- O -acetylated Sias are most abundant in the colon, with lower levels in the heart, brain, and spleen, and minimal levels in other digestive organs of wild-type mice. CASD1 deficiency led to a marked loss of C9/C7- O -acetylated Sias in the colon and other tissues. No differences were observed in colonic O -acetylated Sias from conventional and germ-free wild-type mice, indicating that Sia O -acetylation is independent of the commensal microbiota. Nonetheless, CASD1 deficiency caused subtle changes in microbial gene repertoire consistent with potential exploitation of Sias by subsets of intestinal microbes. Furthermore, CASD1-deficient mice exhibited more severe inflammation and ulceration upon colitis induction compared to controls. Reduced Sia O -acetylation was observed in mice during acute colitis and in colon biopsies from patients with inflammatory bowel disease. Together, our findings suggest CASD1 is the primary physiologically relevant enzyme to add C7/C8/C9- O -acetyl ester groups to Sias and that these Sia modifications exert important gut-protective functions, perhaps by preventing microbial Sia release and metabolism.
- 19 August 2025
- Published by National Academy of Sciences in Proceedings of the National Academy of Sciences
- Vol. 122 (34)
Open AccessLoss of sialic acid side-chain O -acetylation exacerbates colitis
Sialic acids (Sias) are a diverse family of nine-carbon backbone monosaccharides occupying terminal positions on cell surface and secreted glycans and are abundant at mucosal surfaces. Sias can be modified with O -acetyl esters on the side chain (C7 to C9) hydroxyls. Structural analysis and functional studies of these modifications are challenging due to chemical lability and variable resistance to sialidases. For in-depth analysis of the expression and functions of O -acetyl Sia modifications, we used a unique set of sialoglycan-recognizing probes, HPLC analysis of DMB-derivatized Sias and mice lacking the first known sialate O -acetyltransferase, CASD1. C7/C9- O -acetylated Sias are most abundant in the colon, with lower levels in the heart, brain, and spleen, and minimal levels in other digestive organs of wild-type mice. CASD1 deficiency led to a marked loss of C9/C7- O -acetylated Sias in the colon and other tissues. No differences were observed in colonic O -acetylated Sias from conventional and germ-free wild-type mice, indicating that Sia O -acetylation is independent of the commensal microbiota. Nonetheless, CASD1 deficiency caused subtle changes in microbial gene repertoire consistent with potential exploitation of Sias by subsets of intestinal microbes. Furthermore, CASD1-deficient mice exhibited more severe inflammation and ulceration upon colitis induction compared to controls. Reduced Sia O -acetylation was observed in mice during acute colitis and in colon biopsies from patients with inflammatory bowel disease. Together, our findings suggest CASD1 is the primary physiologically relevant enzyme to add C7/C8/C9- O -acetyl ester groups to Sias and that these Sia modifications exert important gut-protective functions, perhaps by preventing microbial Sia release and metabolism.
- Open Access
- 13 July 2025
- Published by Wiley in Advanced Science
- Vol. 12 (37) , e17205
Localized Delivery of the mRNAs Encoding CD47 Inhibitor and Interleukins 12, 15, and 21 Elicits Robust Antitumor Immunity
CD47 inhibitors have emerged as promising candidates in cancer immunotherapy by activating macrophage phagocytosis through CD47/SIRPα signal blockade and enhancing dendritic cell antigen presentation. However, their clinical efficacy remains limited and is accompanied by severe side effects, including anemia and hemagglutination. To address these limitations, a localized delivery strategy is developed using lipid nanoparticles to encapsulate mRNA encoding a secreted CD47 inhibitor. This mRNA‐derived CD47 inhibitor effectively activated macrophages against cancer cells in vitro. To improve its modest tumor‐suppressive effects in vivo, a combination therapy is formulated by co‐delivering mRNAs encoding the CD47 inhibitor and a cytokine cocktail (interleukins 12, 15, and 21), achieving synergistic antitumor effects. Notably, this strategy induces robust systemic antitumor immunity and long‐lasting immunological memory, effectively suppressing metastatic tumor progression following localized treatment of the primary tumor. Mechanistically, the mRNA‐derived CD47 inhibitor promoted the differentiation of conventional type 1 dendritic cells, facilitating T cell cross‐priming and activating cytotoxic T cells. Additionally, the cytokine cocktail further augmented the antitumor activity of these cytotoxic T cells. These findings present a promising strategy for advancing clinical cancer treatment, addressing key challenges associated with current CD47 inhibitor therapies.
- 13 July 2025
- Published by Wiley in Advanced Science
- Vol. 12 (37) , e17205
Open AccessLocalized Delivery of the mRNAs Encoding CD47 Inhibitor and Interleukins 12, 15, and 21 Elicits Robust Antitumor Immunity
CD47 inhibitors have emerged as promising candidates in cancer immunotherapy by activating macrophage phagocytosis through CD47/SIRPα signal blockade and enhancing dendritic cell antigen presentation. However, their clinical efficacy remains limited and is accompanied by severe side effects, including anemia and hemagglutination. To address these limitations, a localized delivery strategy is developed using lipid nanoparticles to encapsulate mRNA encoding a secreted CD47 inhibitor. This mRNA‐derived CD47 inhibitor effectively activated macrophages against cancer cells in vitro. To improve its modest tumor‐suppressive effects in vivo, a combination therapy is formulated by co‐delivering mRNAs encoding the CD47 inhibitor and a cytokine cocktail (interleukins 12, 15, and 21), achieving synergistic antitumor effects. Notably, this strategy induces robust systemic antitumor immunity and long‐lasting immunological memory, effectively suppressing metastatic tumor progression following localized treatment of the primary tumor. Mechanistically, the mRNA‐derived CD47 inhibitor promoted the differentiation of conventional type 1 dendritic cells, facilitating T cell cross‐priming and activating cytotoxic T cells. Additionally, the cytokine cocktail further augmented the antitumor activity of these cytotoxic T cells. These findings present a promising strategy for advancing clinical cancer treatment, addressing key challenges associated with current CD47 inhibitor therapies.
- Open Access
- 13 June 2025
- Published by Elsevier in Molecular Therapy
- Vol. 33 (9) , 4143-4155
Therapeutic effect of galactosyltransferase- and sialyltransferase-encoding mRNA in rheumatoid arthritis
- 13 June 2025
- Published by Elsevier in Molecular Therapy
- Vol. 33 (9) , 4143-4155
Open AccessTherapeutic effect of galactosyltransferase- and sialyltransferase-encoding mRNA in rheumatoid arthritis
- Open Access
- 1 January 2024
- Published by Ivyspring International Publisher in International Journal of Biological Sciences
- Vol. 20 (6) , 2111-2129
A review on Gaucher disease: therapeutic potential of β-glucocerebrosidase-targeted mRNA/saRNA approach
Gaucher disease (GD), a rare hereditary lysosomal storage disorder, occurs due to a deficiency in the enzyme β-glucocerebrosidase (GCase). This deficiency leads to the buildup of substrate glucosylceramide (GlcCer) in macrophages, eventually resulting in various complications. Among its three types, GD2 is particularly severe with neurological involvements. Current treatments, such as enzyme replacement therapy (ERT), are not effective for GD2 and GD3 due to their inability to cross the blood-brain barrier (BBB). Other treatment approaches, such as gene or chaperone therapies are still in experimental stages. Additionally, GD treatments are costly and can have certain side effects. The successful use of messenger RNA (mRNA)-based vaccines for COVID-19 in 2020 has sparked interest in nucleic acid-based therapies. Remarkably, mRNA technology also offers a novel approach for protein replacement purposes. Additionally, self-amplifying RNA (saRNA) technology shows promise, potentially producing more protein at lower doses. This review aims to explore the potential of a cost-effective mRNA/saRNA-based approach for GD therapy. The use of GCase-mRNA/saRNA as a protein replacement therapy could offer a new and promising direction for improving the quality of life and extending the lifespan of individuals with GD.
- 1 January 2024
- Published by Ivyspring International Publisher in International Journal of Biological Sciences
- Vol. 20 (6) , 2111-2129
Open AccessA review on Gaucher disease: therapeutic potential of β-glucocerebrosidase-targeted mRNA/saRNA approach
Gaucher disease (GD), a rare hereditary lysosomal storage disorder, occurs due to a deficiency in the enzyme β-glucocerebrosidase (GCase). This deficiency leads to the buildup of substrate glucosylceramide (GlcCer) in macrophages, eventually resulting in various complications. Among its three types, GD2 is particularly severe with neurological involvements. Current treatments, such as enzyme replacement therapy (ERT), are not effective for GD2 and GD3 due to their inability to cross the blood-brain barrier (BBB). Other treatment approaches, such as gene or chaperone therapies are still in experimental stages. Additionally, GD treatments are costly and can have certain side effects. The successful use of messenger RNA (mRNA)-based vaccines for COVID-19 in 2020 has sparked interest in nucleic acid-based therapies. Remarkably, mRNA technology also offers a novel approach for protein replacement purposes. Additionally, self-amplifying RNA (saRNA) technology shows promise, potentially producing more protein at lower doses. This review aims to explore the potential of a cost-effective mRNA/saRNA-based approach for GD therapy. The use of GCase-mRNA/saRNA as a protein replacement therapy could offer a new and promising direction for improving the quality of life and extending the lifespan of individuals with GD.
- Open Access
- 25 October 2022
- Published by MDPI AG in International Journal of Molecular Sciences
- Vol. 23 (21) , 12884
Self-Amplifying RNA Approach for Protein Replacement Therapy
Messenger RNA (mRNA) technology has already been successfully tested preclinically and there are ongoing clinical trials for protein replacement purposes; however, more effort has been put into the development of prevention strategies against infectious diseases. Apparently, mRNA vaccine approval against coronavirus disease 2019 (COVID-19) is a landmark for opening new opportunities for managing diverse health disorders based on this approach. Indeed, apart from infectious diseases, it has also been widely tested in numerous directions including cancer prevention and the treatment of inherited disorders. Interestingly, self-amplifying RNA (saRNA)-based technology is believed to display more developed RNA therapy compared with conventional mRNA technique in terms of its lower dosage requirements, relatively fewer side effects, and possessing long-lasting effects. Nevertheless, some challenges still exist that need to be overcome in order to achieve saRNA-based drug approval in clinics. Hence, the current review discusses the feasibility of saRNA utility for protein replacement therapy on various health disorders including rare hereditary diseases and also provides a detailed overview of saRNA advantages, its molecular structure, mechanism of action, and relevant delivery platforms.
- 25 October 2022
- Published by MDPI AG in International Journal of Molecular Sciences
- Vol. 23 (21) , 12884
Open AccessSelf-Amplifying RNA Approach for Protein Replacement Therapy
Messenger RNA (mRNA) technology has already been successfully tested preclinically and there are ongoing clinical trials for protein replacement purposes; however, more effort has been put into the development of prevention strategies against infectious diseases. Apparently, mRNA vaccine approval against coronavirus disease 2019 (COVID-19) is a landmark for opening new opportunities for managing diverse health disorders based on this approach. Indeed, apart from infectious diseases, it has also been widely tested in numerous directions including cancer prevention and the treatment of inherited disorders. Interestingly, self-amplifying RNA (saRNA)-based technology is believed to display more developed RNA therapy compared with conventional mRNA technique in terms of its lower dosage requirements, relatively fewer side effects, and possessing long-lasting effects. Nevertheless, some challenges still exist that need to be overcome in order to achieve saRNA-based drug approval in clinics. Hence, the current review discusses the feasibility of saRNA utility for protein replacement therapy on various health disorders including rare hereditary diseases and also provides a detailed overview of saRNA advantages, its molecular structure, mechanism of action, and relevant delivery platforms.