Jialun Pei
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Previous Organizations / Institutes
The organizations / institutes from the scholar's other articles in the past ten years
Jialun Pei has a total of 83 co-authors. Here are the top co-authors by number of shared publications:
- Pheng-Ann Heng
The Chinese University of Hong Kong, Shatin, Hong Kong
12 shared publications - He Tang
School of Software Engineering, Huazhong University of Science and Technology, Wuhan, China
10 shared publications - Jing Qin
The Hong Kong Polytechnic University
6 shared publications - Yueming Jin
National University of Singapore
6 shared publications - Chuanbo Chen
School of Software Engineering, Huazhong University of Science and Technology, Wuhan, China
5 shared publications Pheng-Ann Heng
The Chinese University of Hong Kong
5 shared publications
Latest Publications
- Open Access
- 28 July 2026
- Published by Elsevier in Medical Image Analysis
- Vol. 114, 104237
LungRes80: Towards tangled surgical workflow recognition in video-assisted thoracoscopic surgery
- 28 July 2026
- Published by Elsevier in Medical Image Analysis
- Vol. 114, 104237
Open AccessLungRes80: Towards tangled surgical workflow recognition in video-assisted thoracoscopic surgery
- Open Access
- 13 January 2026
- Published by Elsevier in Medical Image Analysis
- Vol. 109, 103940
Depth-induced prompt learning for laparoscopic liver landmark detection
- 13 January 2026
- Published by Elsevier in Medical Image Analysis
- Vol. 109, 103940
Open AccessDepth-induced prompt learning for laparoscopic liver landmark detection
- Open Access
- 12 January 2026
- Published by Institute of Electrical and Electronics Engineers (IEEE) in IEEE Transactions on Medical Imaging
- Vol. 45 (5) , 2256-2268
Spatio-Temporal Representation Decoupling and Enhancement for Federated Instrument Segmentation in Surgical Videos
Surgical instrument segmentation under Federated Learning (FL) is a promising direction, which enables multiple surgical sites to collaboratively train the model without centralizing datasets. However, there exist very limited FL works in surgical data science, and FL methods for other modalities do not consider inherent characteristics in surgical domain: i) different scenarios show diverse anatomical backgrounds while highly similar instrument representation; ii) there exist surgical simulators which promote large-scale synthetic data generation with minimal efforts. In this paper, we propose a novel Personalized FL scheme, Spatio-Temporal Representation Decoupling and Enhancement (FedST), which wisely leverages surgical domain knowledge during both local-site and global-server training to boost segmentation. Concretely, our model embraces a Representation Separation and Cooperation (RSC) mechanism in local-site training, which decouples the query embedding layer to be trained privately, to encode respective backgrounds. Meanwhile, other parameters are optimized globally to capture the consistent representations of instruments, including the temporal layer to capture similar motion patterns. A textual-guided channel selection is further designed to highlight site-specific features, facilitating model adaptation to each site. Moreover, in global-server training, we propose Synthesis-based Explicit Representation Quantification (SERQ), which defines an explicit representation target based on synthetic data to synchronize the model convergence during fusion for improving model generalization. We construct a new PFL benchmark comprising five surgical sites from public datasets covering four types, with one out-of-federation site. FedST outperforms other state-of-the-art methods on federated sites (1.84% on IoU) and achieves a remarkable improvement on the out-of-federation site (45.29% on IoU). Our source code can be made available at: https://github.com/Meaw0415/FedST.
- 12 January 2026
- Published by Institute of Electrical and Electronics Engineers (IEEE) in IEEE Transactions on Medical Imaging
- Vol. 45 (5) , 2256-2268
Open AccessSpatio-Temporal Representation Decoupling and Enhancement for Federated Instrument Segmentation in Surgical Videos
Surgical instrument segmentation under Federated Learning (FL) is a promising direction, which enables multiple surgical sites to collaboratively train the model without centralizing datasets. However, there exist very limited FL works in surgical data science, and FL methods for other modalities do not consider inherent characteristics in surgical domain: i) different scenarios show diverse anatomical backgrounds while highly similar instrument representation; ii) there exist surgical simulators which promote large-scale synthetic data generation with minimal efforts. In this paper, we propose a novel Personalized FL scheme, Spatio-Temporal Representation Decoupling and Enhancement (FedST), which wisely leverages surgical domain knowledge during both local-site and global-server training to boost segmentation. Concretely, our model embraces a Representation Separation and Cooperation (RSC) mechanism in local-site training, which decouples the query embedding layer to be trained privately, to encode respective backgrounds. Meanwhile, other parameters are optimized globally to capture the consistent representations of instruments, including the temporal layer to capture similar motion patterns. A textual-guided channel selection is further designed to highlight site-specific features, facilitating model adaptation to each site. Moreover, in global-server training, we propose Synthesis-based Explicit Representation Quantification (SERQ), which defines an explicit representation target based on synthetic data to synchronize the model convergence during fusion for improving model generalization. We construct a new PFL benchmark comprising five surgical sites from public datasets covering four types, with one out-of-federation site. FedST outperforms other state-of-the-art methods on federated sites (1.84% on IoU) and achieves a remarkable improvement on the out-of-federation site (45.29% on IoU). Our source code can be made available at: https://github.com/Meaw0415/FedST.
- Open Access
- 1 January 2026
- Published by Institute of Electrical and Electronics Engineers (IEEE) in IEEE Transactions on Medical Imaging
- p. 1
Optimize Surgical Triplet Recognition: A Knowledge-Driven Mixture-of-Experts Solution
- 1 January 2026
- Published by Institute of Electrical and Electronics Engineers (IEEE) in IEEE Transactions on Medical Imaging
- p. 1
Open AccessOptimize Surgical Triplet Recognition: A Knowledge-Driven Mixture-of-Experts Solution
- 1 December 2025
- Published by Institute of Electrical and Electronics Engineers (IEEE) in IEEE Transactions on Medical Imaging
- Vol. 44 (12) , 5278-5289
Instrument-Tissue-Guided Surgical Action Triplet Detection via Textual-Temporal Trail Exploration
Surgical action triplet detection offers intuitive intraoperative scene analysis for dynamically perceiving laparoscopic surgical workflows and analyzing the interaction between instruments and tissues. The current challenge of this task lies in simultaneously localizing surgical instruments while performing more accurate surgical triplet recognition to enhance a comprehensive understanding of intraoperative surgical scenes. To fully leverage the spatial localization of surgical instruments for associating with triplet detection, we propose an Instrument-Tissue-Guided Triplet detector, termed ITG-Trip, which navigates the confluence of surgical action cues through instrument and tissue pseudo-localization labeling to optimize action triplet detection. For exploiting textual and temporal trails, our framework embraces a Visual-Linguistic Association (VLA) module that exploits a pre-trained text encoder to distill textual prior knowledge, enhancing semantic information in global visual features and compensating rare interaction class perception. Besides, we introduce a Mamba-enhanced Spatial-temporal Perception (MSP) decoder, which weaves Mamba and Transformer blocks to explore subject- and object-aware spatial and temporal information to improve the accuracy of action triplet detection in long-time sequence surgical videos. Experimental results on the CholecT50 benchmark indicate that our method significantly outperforms existing state-of-the-art methods in both instrument localization and action triplet detection. The code is available at: github.com/PJLallen/ITG-Trip.
- 1 December 2025
- Published by Institute of Electrical and Electronics Engineers (IEEE) in IEEE Transactions on Medical Imaging
- Vol. 44 (12) , 5278-5289
Instrument-Tissue-Guided Surgical Action Triplet Detection via Textual-Temporal Trail Exploration
Surgical action triplet detection offers intuitive intraoperative scene analysis for dynamically perceiving laparoscopic surgical workflows and analyzing the interaction between instruments and tissues. The current challenge of this task lies in simultaneously localizing surgical instruments while performing more accurate surgical triplet recognition to enhance a comprehensive understanding of intraoperative surgical scenes. To fully leverage the spatial localization of surgical instruments for associating with triplet detection, we propose an Instrument-Tissue-Guided Triplet detector, termed ITG-Trip, which navigates the confluence of surgical action cues through instrument and tissue pseudo-localization labeling to optimize action triplet detection. For exploiting textual and temporal trails, our framework embraces a Visual-Linguistic Association (VLA) module that exploits a pre-trained text encoder to distill textual prior knowledge, enhancing semantic information in global visual features and compensating rare interaction class perception. Besides, we introduce a Mamba-enhanced Spatial-temporal Perception (MSP) decoder, which weaves Mamba and Transformer blocks to explore subject- and object-aware spatial and temporal information to improve the accuracy of action triplet detection in long-time sequence surgical videos. Experimental results on the CholecT50 benchmark indicate that our method significantly outperforms existing state-of-the-art methods in both instrument localization and action triplet detection. The code is available at: github.com/PJLallen/ITG-Trip.
- 20 September 2025
- Published by Springer Nature
- p. 585-594
Topology-Constrained Learning for Efficient Laparoscopic Liver Landmark Detection
- 20 September 2025
- Published by Springer Nature
- p. 585-594
Topology-Constrained Learning for Efficient Laparoscopic Liver Landmark Detection
- 19 July 2025
- Published by Elsevier in Computerized Medical Imaging and Graphics
- Vol. 124, 102608
Taming large vision model for medical image segmentation via Dual Visual Prompt Tuning
- 19 July 2025
- Published by Elsevier in Computerized Medical Imaging and Graphics
- Vol. 124, 102608
Taming large vision model for medical image segmentation via Dual Visual Prompt Tuning
- Open Access
Topology-Constrained Learning for Efficient Laparoscopic Liver Landmark Detection
Liver landmarks provide crucial anatomical guidance to the surgeon during laparoscopic liver surgery to minimize surgical risk. However, the tubular structural properties of landmarks and dynamic intraoperative deformations pose significant challenges for automatic landmark detection. In this study, we introduce TopoNet, a novel topology-constrained learning framework for laparoscopic liver landmark detection. Our framework adopts a snake-CNN dual-path encoder to simultaneously capture detailed RGB texture information and depth-informed topological structures. Meanwhile, we propose a boundary-aware topology fusion (BTF) module, which adaptively merges RGB-D features to enhance edge perception while preserving global topology. Additionally, a topological constraint loss function is embedded, which contains a center-line constraint loss and a topological persistence loss to ensure homotopy equivalence between predictions and labels. Extensive experiments on L3D and P2ILF datasets demonstrate that TopoNet achieves outstanding accuracy and computational complexity, highlighting the potential for clinical applications in laparoscopic liver surgery. Our code will be available at https://github.com/cuiruize/TopoNet.
Open AccessTopology-Constrained Learning for Efficient Laparoscopic Liver Landmark Detection
Liver landmarks provide crucial anatomical guidance to the surgeon during laparoscopic liver surgery to minimize surgical risk. However, the tubular structural properties of landmarks and dynamic intraoperative deformations pose significant challenges for automatic landmark detection. In this study, we introduce TopoNet, a novel topology-constrained learning framework for laparoscopic liver landmark detection. Our framework adopts a snake-CNN dual-path encoder to simultaneously capture detailed RGB texture information and depth-informed topological structures. Meanwhile, we propose a boundary-aware topology fusion (BTF) module, which adaptively merges RGB-D features to enhance edge perception while preserving global topology. Additionally, a topological constraint loss function is embedded, which contains a center-line constraint loss and a topological persistence loss to ensure homotopy equivalence between predictions and labels. Extensive experiments on L3D and P2ILF datasets demonstrate that TopoNet achieves outstanding accuracy and computational complexity, highlighting the potential for clinical applications in laparoscopic liver surgery. Our code will be available at https://github.com/cuiruize/TopoNet.
- 23 June 2025
- Published by Institute of Electrical and Electronics Engineers (IEEE) in IEEE Journal of Biomedical and Health Informatics
- Vol. 29 (10) , 7336-7348
Boosting Few-Shot Semantic Segmentation of 3D Medical Images via Collaborative Slice Alignment
Few-shot semantic segmentation (FSS) of 3D medical images requires finding a 2D slice from the labeled volume as support to ‘query’ slices of the unlabeled one. Accurately determining support slices is crucial for learning representative prototypical features, thereby enhancing segmentation accuracy. The existing methods typically resort to the true position of the query target to align the query with support slices or simply exploit one key support slice to segment all query slices, which inevitably results in poor practicality and mis-segmentation. In this regard, we seek a practical and efficient solution by proposing a novel Collaborative Slice Alignment (CSA) module, which densely assigns each query slice its own fittest support without knowing the target prior. Concretely, our CSA first estimates the confidence scores of slices from the sorting task to implicitly reflect their physical location in the human body. The estimated scores are considered as spatial references for aligning support slices and query slices so that each matching pair shares the most similar image contents. Moreover, the self-learnable ranking objective allows CSA to transfer internal knowledge into both support and query features to further boost the FSS performance. Additionally, we introduce an Information Reconciliation (InRe) module to mitigate the inconsistent feature distribution caused by the individual differences between support and query images. Experimental results demonstrate that the combination of CSA and InRe achieves an average Dice score improvement of at least 8.61% across three datasets, consistently outperforming other state-of-the-art methods.
- 23 June 2025
- Published by Institute of Electrical and Electronics Engineers (IEEE) in IEEE Journal of Biomedical and Health Informatics
- Vol. 29 (10) , 7336-7348
Boosting Few-Shot Semantic Segmentation of 3D Medical Images via Collaborative Slice Alignment
Few-shot semantic segmentation (FSS) of 3D medical images requires finding a 2D slice from the labeled volume as support to ‘query’ slices of the unlabeled one. Accurately determining support slices is crucial for learning representative prototypical features, thereby enhancing segmentation accuracy. The existing methods typically resort to the true position of the query target to align the query with support slices or simply exploit one key support slice to segment all query slices, which inevitably results in poor practicality and mis-segmentation. In this regard, we seek a practical and efficient solution by proposing a novel Collaborative Slice Alignment (CSA) module, which densely assigns each query slice its own fittest support without knowing the target prior. Concretely, our CSA first estimates the confidence scores of slices from the sorting task to implicitly reflect their physical location in the human body. The estimated scores are considered as spatial references for aligning support slices and query slices so that each matching pair shares the most similar image contents. Moreover, the self-learnable ranking objective allows CSA to transfer internal knowledge into both support and query features to further boost the FSS performance. Additionally, we introduce an Information Reconciliation (InRe) module to mitigate the inconsistent feature distribution caused by the individual differences between support and query images. Experimental results demonstrate that the combination of CSA and InRe achieves an average Dice score improvement of at least 8.61% across three datasets, consistently outperforming other state-of-the-art methods.
- 9 June 2025
- Published by Institute of Electrical and Electronics Engineers (IEEE) in IEEE Transactions on Medical Imaging
- Vol. 44 (11) , 4417-4431
Toward Reliable AR-Guided Surgical Navigation: Interactive Deformation Modeling With Data-Driven Biomechanics and Prompts
In augmented reality (AR)-guided surgical navigation, preoperative organ models are superimposed onto the patient’s intraoperative anatomy to visualize critical structures such as vessels and tumors. Accurate deformation modeling is essential to maintain the reliability of AR overlays by ensuring alignment between preoperative models and the dynamically changing anatomy. While finite element (FE) methods offer physically plausible modeling, their high computational cost limits intraoperative applicability. Moreover, large anatomical changes—such as those induced by pneumoperitoneum or ligament dissection— often exceed the capabilities of existing algorithms, leading to inaccurate correspondences and compromised AR guidance. To address these challenges, we propose a data-driven biomechanics algorithm that preserves FE-level accuracy while reducing computational time by approximately 60%. In addition, we introduce an interactive human-in-the-loop framework that enables surgeons to provide immediate corrective prompts to refine deformation predictions, allowing the model to incorporate human expertise and adapt to complex surgical scenarios. Experiments on a public liver phantom dataset demonstrate that our algorithm achieves a mean target registration error of 3.42 mm. Incorporating surgeon prompts through the interactive framework further reduces the error to 2.78 mm, surpassing state-of-the-art methods in volumetric accuracy. In-vivo studies similarly show measurable improvements in surface alignment after incorporating surgeon prompts. These results highlight the ability of our framework to deliver accurate and efficient deformation modeling while enhancing surgeon-algorithm collaboration, paving the way for safer and more reliable computer-assisted surgeries.
- 9 June 2025
- Published by Institute of Electrical and Electronics Engineers (IEEE) in IEEE Transactions on Medical Imaging
- Vol. 44 (11) , 4417-4431
Toward Reliable AR-Guided Surgical Navigation: Interactive Deformation Modeling With Data-Driven Biomechanics and Prompts
In augmented reality (AR)-guided surgical navigation, preoperative organ models are superimposed onto the patient’s intraoperative anatomy to visualize critical structures such as vessels and tumors. Accurate deformation modeling is essential to maintain the reliability of AR overlays by ensuring alignment between preoperative models and the dynamically changing anatomy. While finite element (FE) methods offer physically plausible modeling, their high computational cost limits intraoperative applicability. Moreover, large anatomical changes—such as those induced by pneumoperitoneum or ligament dissection— often exceed the capabilities of existing algorithms, leading to inaccurate correspondences and compromised AR guidance. To address these challenges, we propose a data-driven biomechanics algorithm that preserves FE-level accuracy while reducing computational time by approximately 60%. In addition, we introduce an interactive human-in-the-loop framework that enables surgeons to provide immediate corrective prompts to refine deformation predictions, allowing the model to incorporate human expertise and adapt to complex surgical scenarios. Experiments on a public liver phantom dataset demonstrate that our algorithm achieves a mean target registration error of 3.42 mm. Incorporating surgeon prompts through the interactive framework further reduces the error to 2.78 mm, surpassing state-of-the-art methods in volumetric accuracy. In-vivo studies similarly show measurable improvements in surface alignment after incorporating surgeon prompts. These results highlight the ability of our framework to deliver accurate and efficient deformation modeling while enhancing surgeon-algorithm collaboration, paving the way for safer and more reliable computer-assisted surgeries.