Alex Mogilner
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Previous Organizations / Institutes
The organizations / institutes from the scholar's other articles in the past ten years
Research Subjects
Alex Mogilner has a total of 237 co-authors. Here are the top co-authors by number of shared publications:
- Christopher E. Miles
Department of Mathematics, University of Utah, Salt Lake City, UT, USA
10 shared publications - Min Zhao
Department of Ophthalmology & Vision Science, School of Medicine, University of California, Davis, Sacramento, California, United States of America
8 shared publications - Alexey Khodjakov
Wadsworth Center, New York State Department of Health, Albany, NY, USA
7 shared publications Brian Reid
Department of Ophthalmology and Vision Science, School of Medicine, University of California, Davis
6 shared publicationsCalina Copos
Department of Biology and Department of Mathematics, Northeastern University
6 shared publications- Laurent Blanchoin
CEA Grenoble
6 shared publications
Latest Publications
- Open Access
Hierarchy of spindle forces in prometaphase
Dramatic movements characterize rapid assembly of mitotic spindle in prometaphase: chromosomes congress to the spindle equator, while spindle poles segregate rapidly elongating the spindle. Direct biophysical measurements of forces driving these movements are lacking, but the forces could be learned from the rapid pole and chromosome movements. We analyzed 3D trajectories of chromosomes and spindle poles in the wild-type and PRC1-depleted cells during early prometaphase and reconstructed the spindle forces. This analysis posits that (i) chromosomes do not interact with each other, except for a short-range steric repulsion, (ii) effective pole-chromosome forces are repulsive at short and attractive at long distances, (iii) dominant forces of spindle poles segregation are interpolar in origin. The important implication of these results is that the pole-pole segregation is robust, largely insensitive to regional variations inside the cell and to complex process of chromosome congression. SIGNIFICANCE: Mechanics of prometaphase is crucial for mitotic spindle assembly, yet measurements of forces in prometaphase are lacking. We use movements of centrosomes and chromosomes in prometaphase to reconstruct the spindle forces. We find that the forces are hierarchical, with the interpolar force balance dominating smaller forces between the spindle poles and chromosomes. The important implication of these results is that the pole-pole segregation is robust, largely insensitive to regional variations inside the cell and to complex process of chromosome congression.
Open AccessHierarchy of spindle forces in prometaphase
Dramatic movements characterize rapid assembly of mitotic spindle in prometaphase: chromosomes congress to the spindle equator, while spindle poles segregate rapidly elongating the spindle. Direct biophysical measurements of forces driving these movements are lacking, but the forces could be learned from the rapid pole and chromosome movements. We analyzed 3D trajectories of chromosomes and spindle poles in the wild-type and PRC1-depleted cells during early prometaphase and reconstructed the spindle forces. This analysis posits that (i) chromosomes do not interact with each other, except for a short-range steric repulsion, (ii) effective pole-chromosome forces are repulsive at short and attractive at long distances, (iii) dominant forces of spindle poles segregation are interpolar in origin. The important implication of these results is that the pole-pole segregation is robust, largely insensitive to regional variations inside the cell and to complex process of chromosome congression. SIGNIFICANCE: Mechanics of prometaphase is crucial for mitotic spindle assembly, yet measurements of forces in prometaphase are lacking. We use movements of centrosomes and chromosomes in prometaphase to reconstruct the spindle forces. We find that the forces are hierarchical, with the interpolar force balance dominating smaller forces between the spindle poles and chromosomes. The important implication of these results is that the pole-pole segregation is robust, largely insensitive to regional variations inside the cell and to complex process of chromosome congression.
- Open Access
- 16 October 2026
- Published by National Academy of Sciences in Proceedings of the National Academy of Sciences
- Vol. 123 (42)
Reconstructing actin dynamics of the leading edge from observational data
Mesenchymal cell migration starts with the protrusion of the cell’s leading edge, enabled by the branching growth of the actin network. Two crucial molecular players in protrusion are actin filaments and the Arp2/3 complex, the branching agent. Traditionally, protrusion models are intuited from several perturbative experiments. Recent multiplex microscopy imaging data promise to change this paradigm by providing measurements of naturally fluctuating densities of key proteins at the leading edge of unperturbed cells. We report an attempt to reconstruct the mechanistic protrusion model from such data. We analyze fluctuations of densities of actin filaments and Arp2/3 complex and cell edge velocity using phase space and regression analysis to reconstruct linearized dynamics of the coupled actin-Arp2/3-velocity system. We then build a nonlinear model of these dynamics based on previous knowledge of this system and parsimony. The resulting models recover the rates of reactions and mechanical and transport processes in the lamellipodium from a single nonperturbative experiment. The models posit that the dominant nonlinear term in the lamellipodial dynamics corresponds to the retrograde flow of the actin network in the cell frame. The models suggest that the protrusion is dominated by a damped oscillatory cycle resulting from a combination of positive feedback from the Arp2/3 complex to protrusion velocity and negative feedback from actin density to the velocity.
- 16 October 2026
- Published by National Academy of Sciences in Proceedings of the National Academy of Sciences
- Vol. 123 (42)
Open AccessReconstructing actin dynamics of the leading edge from observational data
Mesenchymal cell migration starts with the protrusion of the cell’s leading edge, enabled by the branching growth of the actin network. Two crucial molecular players in protrusion are actin filaments and the Arp2/3 complex, the branching agent. Traditionally, protrusion models are intuited from several perturbative experiments. Recent multiplex microscopy imaging data promise to change this paradigm by providing measurements of naturally fluctuating densities of key proteins at the leading edge of unperturbed cells. We report an attempt to reconstruct the mechanistic protrusion model from such data. We analyze fluctuations of densities of actin filaments and Arp2/3 complex and cell edge velocity using phase space and regression analysis to reconstruct linearized dynamics of the coupled actin-Arp2/3-velocity system. We then build a nonlinear model of these dynamics based on previous knowledge of this system and parsimony. The resulting models recover the rates of reactions and mechanical and transport processes in the lamellipodium from a single nonperturbative experiment. The models posit that the dominant nonlinear term in the lamellipodial dynamics corresponds to the retrograde flow of the actin network in the cell frame. The models suggest that the protrusion is dominated by a damped oscillatory cycle resulting from a combination of positive feedback from the Arp2/3 complex to protrusion velocity and negative feedback from actin density to the velocity.
- Open Access
- 24 August 2026
- Published by Springer Nature in Nature Communications
- Vol. 17 (1) , 10094
Actin based cell chirality emerging at the boundary of 2D-microtissue directs chiral multicellular pattern formation
The mechanisms underlying both the establishment of mirror (reflection) symmetry and deviations from it in the development of bilateral multicellular organisms remain insufficiently understood. Actin cytoskeletons of individual cells exhibit intrinsic chirality, and a strong correlation exists between single-cell actin fibres’ chiral organisation and the collective alignment of cells confined to rectangular adhesive islands (2D-microtissues). Here, we demonstrate how multicellular chiral patterns can be inferred from the chiral behaviour of actin fibres in individual cells. By analysing chiral actin systems in cells with elliptical and semicircular shapes, representing inner and boundary positions within 2D-microtissues, we defined the rules of chiral motile behaviour and formulated two models of cell alignment: (i) chiral rotation of inner cells and (ii) chiral tilting of boundary cells relative to island edges. In both models, neighbouring cells are mutually aligned. Systematic variation of island area and aspect ratio, combined with dynamic observations, revealed the primary role of boundary cells. Chiral order first emerged at tissue boundaries and then propagated inward. This outside-in mechanism also explains how intrinsically chiral cells can build mirror-symmetric tissues in bilateral organisms: either by reversing cell chirality in one half or by enlarging the tissue to minimise boundary influence.
- 24 August 2026
- Published by Springer Nature in Nature Communications
- Vol. 17 (1) , 10094
Open AccessActin based cell chirality emerging at the boundary of 2D-microtissue directs chiral multicellular pattern formation
The mechanisms underlying both the establishment of mirror (reflection) symmetry and deviations from it in the development of bilateral multicellular organisms remain insufficiently understood. Actin cytoskeletons of individual cells exhibit intrinsic chirality, and a strong correlation exists between single-cell actin fibres’ chiral organisation and the collective alignment of cells confined to rectangular adhesive islands (2D-microtissues). Here, we demonstrate how multicellular chiral patterns can be inferred from the chiral behaviour of actin fibres in individual cells. By analysing chiral actin systems in cells with elliptical and semicircular shapes, representing inner and boundary positions within 2D-microtissues, we defined the rules of chiral motile behaviour and formulated two models of cell alignment: (i) chiral rotation of inner cells and (ii) chiral tilting of boundary cells relative to island edges. In both models, neighbouring cells are mutually aligned. Systematic variation of island area and aspect ratio, combined with dynamic observations, revealed the primary role of boundary cells. Chiral order first emerged at tissue boundaries and then propagated inward. This outside-in mechanism also explains how intrinsically chiral cells can build mirror-symmetric tissues in bilateral organisms: either by reversing cell chirality in one half or by enlarging the tissue to minimise boundary influence.
- 25 February 2026
- Published by Elsevier in Biophysical Journal
- Vol. 125 (8) , 1867-1879
Nonuniform filament turnover, contractility, and bundle formation in disordered actomyosin networks
- 25 February 2026
- Published by Elsevier in Biophysical Journal
- Vol. 125 (8) , 1867-1879
Nonuniform filament turnover, contractility, and bundle formation in disordered actomyosin networks
- Open Access
Reconstructing Actin Dynamics of the Leading Edge from Observational Data
Mesenchymal cell migration starts with the protrusion of the cell’s leading edge, enabled by the branching growth of the actin network. Two crucial molecular players in protrusion are actin filaments and the Arp2/3 protein complex, the branching agent. Traditionally, protrusion models are intuited from several perturbative experiments. Recent multiplex microscopy imaging data promise to drastically change this paradigm by providing measurements of naturally fluctuating densities of key proteins at the leading edge of unperturbed cells. We report the first attempt to reconstruct the mechanistic protrusion model from such data. We analyze fluctuations of F-actin and Arp2/3 densities and cell edge velocity using phase space and regression analysis to reconstruct linearized stochastic actin-Arp2/3-velocity coupled dynamics. We then build a nonlinear partial differential equation model of these dynamics based on previous knowledge of this system and parsimony. The resulting model recovers the rates of reactions and mechanical and transport processes in the lamellipodium from a single non-perturbative experiment. The model posits that the only essential nonlinearities in the lamellipodial dynamics stem from the retrograde flow of F-actin. The model suggests that the protrusion is dominated by a damped oscillatory cycle resulting from a combination of positive feedback from Arp2/3 to protrusion velocity and negative feedback from F-actin to the velocity. Significance statement: Traditionally, models of intracellular mechanochemistry are intuited from perturbative experiments. Multiplex microscopy imaging changes this by providing measurements of naturally fluctuating densities of key proteins in unperturbed cells. We use such data to reconstruct a mechanistic model of cell leading edge. We build equations for actin system and edge velocity using data, previous knowledge and parsimony. The resulting model recovers the rates of reactions and mechanical and transport processes at the leading edge. The model suggests that the protrusion is dominated by a damped oscillatory cycle resulting from a combination of positive feedback from Arp2/3 to protrusion velocity and negative feedback from F-actin to the velocity.
Open AccessReconstructing Actin Dynamics of the Leading Edge from Observational Data
Mesenchymal cell migration starts with the protrusion of the cell’s leading edge, enabled by the branching growth of the actin network. Two crucial molecular players in protrusion are actin filaments and the Arp2/3 protein complex, the branching agent. Traditionally, protrusion models are intuited from several perturbative experiments. Recent multiplex microscopy imaging data promise to drastically change this paradigm by providing measurements of naturally fluctuating densities of key proteins at the leading edge of unperturbed cells. We report the first attempt to reconstruct the mechanistic protrusion model from such data. We analyze fluctuations of F-actin and Arp2/3 densities and cell edge velocity using phase space and regression analysis to reconstruct linearized stochastic actin-Arp2/3-velocity coupled dynamics. We then build a nonlinear partial differential equation model of these dynamics based on previous knowledge of this system and parsimony. The resulting model recovers the rates of reactions and mechanical and transport processes in the lamellipodium from a single non-perturbative experiment. The model posits that the only essential nonlinearities in the lamellipodial dynamics stem from the retrograde flow of F-actin. The model suggests that the protrusion is dominated by a damped oscillatory cycle resulting from a combination of positive feedback from Arp2/3 to protrusion velocity and negative feedback from F-actin to the velocity. Significance statement: Traditionally, models of intracellular mechanochemistry are intuited from perturbative experiments. Multiplex microscopy imaging changes this by providing measurements of naturally fluctuating densities of key proteins in unperturbed cells. We use such data to reconstruct a mechanistic model of cell leading edge. We build equations for actin system and edge velocity using data, previous knowledge and parsimony. The resulting model recovers the rates of reactions and mechanical and transport processes at the leading edge. The model suggests that the protrusion is dominated by a damped oscillatory cycle resulting from a combination of positive feedback from Arp2/3 to protrusion velocity and negative feedback from F-actin to the velocity.
- Open Access
- 28 January 2026
- Published by National Academy of Sciences in Proceedings of the National Academy of Sciences
- Vol. 123 (5)
The kinetochore corona orchestrates chromosome congression through transient microtubule interactions
For proper segregation of chromosomes and successful cytokinesis, chromosomes must first “congress”—gather in a tight plate near the spindle equator. Molecular mechanism(s) of congression are not fully understood. Here we combine live-cell microscopy, perturbations of microtubule motor activities, correlative light/electron microscopy, and computational modeling, to quantitatively characterize the early-prometaphase movements that bring the scattered chromosomes to the equator in human RPE1 cells. We find that the early-prometaphase movements are directed toward the center of the spindle axis and not the spindle poles. Centromere velocity of the centripetal movements is not constant, with centromeres moving faster at larger distances from the spindle center. We also detect that numerous short microtubules appear at kinetochores at the earliest stages of spindle assembly and prior to chromosome congression. Computational modeling reveals that a mechanism based on brief, stochastic, minus-end directed interactions between the short microtubules protruding from the kinetochores and long appropriately curved microtubules within the spindle accurately predicts the observed distance-velocity function. Further, the model predicts that insufficient numbers of microtubules protruding from the kinetochores decreases the velocity and randomizes directionality of congression movements. These predictions match changes in the chromosome behavior observed in cells with suppressed nucleation of microtubules at the kinetochore corona (RPE1 Rod Δ/Δ ). In contrast, predictions of computational models based on continuous pulling forces at kinetochores differ significantly from the experimental observations. Together, live-cell observations and modeling reveal a mechanism that enables the efficient and synchronized arrival of chromosomes to the spindle equator.
- 28 January 2026
- Published by National Academy of Sciences in Proceedings of the National Academy of Sciences
- Vol. 123 (5)
Open AccessThe kinetochore corona orchestrates chromosome congression through transient microtubule interactions
For proper segregation of chromosomes and successful cytokinesis, chromosomes must first “congress”—gather in a tight plate near the spindle equator. Molecular mechanism(s) of congression are not fully understood. Here we combine live-cell microscopy, perturbations of microtubule motor activities, correlative light/electron microscopy, and computational modeling, to quantitatively characterize the early-prometaphase movements that bring the scattered chromosomes to the equator in human RPE1 cells. We find that the early-prometaphase movements are directed toward the center of the spindle axis and not the spindle poles. Centromere velocity of the centripetal movements is not constant, with centromeres moving faster at larger distances from the spindle center. We also detect that numerous short microtubules appear at kinetochores at the earliest stages of spindle assembly and prior to chromosome congression. Computational modeling reveals that a mechanism based on brief, stochastic, minus-end directed interactions between the short microtubules protruding from the kinetochores and long appropriately curved microtubules within the spindle accurately predicts the observed distance-velocity function. Further, the model predicts that insufficient numbers of microtubules protruding from the kinetochores decreases the velocity and randomizes directionality of congression movements. These predictions match changes in the chromosome behavior observed in cells with suppressed nucleation of microtubules at the kinetochore corona (RPE1 Rod Δ/Δ ). In contrast, predictions of computational models based on continuous pulling forces at kinetochores differ significantly from the experimental observations. Together, live-cell observations and modeling reveal a mechanism that enables the efficient and synchronized arrival of chromosomes to the spindle equator.
- Open Access
Ordering from the edge: Chiral multicellular pattern formation directed by actin self-organisation in cells
The mechanisms underlying both the establishment of mirror symmetry and deviations from it in development of bilateral multicellular organisms remain insufficiently understood. Actin cytoskeletons of individual cells exhibit intrinsic chirality, and a strong correlation exists between single-cell actin fibres chiral organisation and the collective alignment of cells confined to rectangular adhesive islands (2D-microtissues). Here, we demonstrate how multicellular chiral patterns can be inferred from the chiral behaviour of actin fibres in individual cells. By analysing chiral actin systems in cells with elliptical and semi-circular shapes, representing inner and boundary positions within 2D-microtissues, we defined the rules of chiral motile behaviour and formulated two models of cell alignment: (i) chiral rotation of inner cells and (ii) chiral tilting of boundary cells relative to island edges. In both models, neighbouring cells are also mutually aligned. Systematic variation of island area and aspect ratio, combined with dynamic observations, revealed the primary role of boundary cells. Chiral order first emerged at tissue boundaries and then propagated inward. This outside-in mechanism also explains why mirror-symmetric cell groups are difficult to achieve with uniformly chiral cells, but can be obtained either by reversing chirality in one subgroup or by enlarging the microtissue to minimise boundary influence.
Open AccessOrdering from the edge: Chiral multicellular pattern formation directed by actin self-organisation in cells
The mechanisms underlying both the establishment of mirror symmetry and deviations from it in development of bilateral multicellular organisms remain insufficiently understood. Actin cytoskeletons of individual cells exhibit intrinsic chirality, and a strong correlation exists between single-cell actin fibres chiral organisation and the collective alignment of cells confined to rectangular adhesive islands (2D-microtissues). Here, we demonstrate how multicellular chiral patterns can be inferred from the chiral behaviour of actin fibres in individual cells. By analysing chiral actin systems in cells with elliptical and semi-circular shapes, representing inner and boundary positions within 2D-microtissues, we defined the rules of chiral motile behaviour and formulated two models of cell alignment: (i) chiral rotation of inner cells and (ii) chiral tilting of boundary cells relative to island edges. In both models, neighbouring cells are also mutually aligned. Systematic variation of island area and aspect ratio, combined with dynamic observations, revealed the primary role of boundary cells. Chiral order first emerged at tissue boundaries and then propagated inward. This outside-in mechanism also explains why mirror-symmetric cell groups are difficult to achieve with uniformly chiral cells, but can be obtained either by reversing chirality in one subgroup or by enlarging the microtissue to minimise boundary influence.
- 26 September 2025
- Published by Springer Nature in Nature Physics
- Vol. 21 (10) , 1524-1525
Simple cell motility on adhesive gradients
- 26 September 2025
- Published by Springer Nature in Nature Physics
- Vol. 21 (10) , 1524-1525
Simple cell motility on adhesive gradients
- Open Access
The kinetochore corona orchestrates chromosome congression through transient microtubule interactions
For proper segregation of chromosomes and successful cytokinesis, chromosomes must first ‘congress’ - gather in a tight plate near the spindle equator. Molecular mechanism(s) of congression are not fully understood. Here we combine live cell microscopy, perturbations of microtubule motor activities, correlative light/electron microscopy, and computational modeling, to quantitatively characterize the early-prometaphase movements that bring the scattered chromosomes to the equator in human RPE1 cells. We find that the early-prometaphase movements are predominantly directed toward the spindle center and not the spindle poles. Centromere velocity of the centripetal movements is not constant with centromeres moving faster at larger distances from the spindle center. We also detect that numerous short microtubules appear at kinetochores at the earliest stages of spindle assembly and prior to chromosome congression. Computational modeling reveals that a mechanism based on brief, stochastic, minus-end directed interactions between the short microtubules protruding from the kinetochores and long appropriately curved microtubules within the spindle accurately predicts the observed distance-velocity function. Further, the model predicts that insufficient numbers of microtubules protruding from the kinetochores decreases the velocity and randomizes directionality of congression movements. These predictions match changes in the chromosome behavior observed in cells with suppressed nucleation of microtubules at the kinetochore corona (RPE1 Rod Δ/Δ ). In contrast, predictions of computational models based on continuous pulling forces at kinetochores differ significantly from the experimental observations. Together, live-cell observations and modeling reveal a novel mechanism that enables the efficient and synchronized arrival of chromosomes to the spindle equator. Significance Statement: For equal segregation into daughter cells, chromosomes, scattered in a large volume at the onset of cell division, must congress into a narrow plate near the equator of the mitotic spindle. Molecular mechanisms of congression remain obscure. Here we use live-cell microscopy and structural analyses to quantitatively characterize chromosome behavior during congression in human cells. From these quantifications we derive a computational model that accurately predicts directionality and velocity of chromosome movements and suggests that the force for these movements arises from stochastic, transient, minus-end directed interactions between short microtubules protruding from the kinetochores and long appropriately shaped microtubules within the spindle. The model also accurately predicts changes in chromosome behavior in cells with functionally deficient kinetochores.
Open AccessThe kinetochore corona orchestrates chromosome congression through transient microtubule interactions
For proper segregation of chromosomes and successful cytokinesis, chromosomes must first ‘congress’ - gather in a tight plate near the spindle equator. Molecular mechanism(s) of congression are not fully understood. Here we combine live cell microscopy, perturbations of microtubule motor activities, correlative light/electron microscopy, and computational modeling, to quantitatively characterize the early-prometaphase movements that bring the scattered chromosomes to the equator in human RPE1 cells. We find that the early-prometaphase movements are predominantly directed toward the spindle center and not the spindle poles. Centromere velocity of the centripetal movements is not constant with centromeres moving faster at larger distances from the spindle center. We also detect that numerous short microtubules appear at kinetochores at the earliest stages of spindle assembly and prior to chromosome congression. Computational modeling reveals that a mechanism based on brief, stochastic, minus-end directed interactions between the short microtubules protruding from the kinetochores and long appropriately curved microtubules within the spindle accurately predicts the observed distance-velocity function. Further, the model predicts that insufficient numbers of microtubules protruding from the kinetochores decreases the velocity and randomizes directionality of congression movements. These predictions match changes in the chromosome behavior observed in cells with suppressed nucleation of microtubules at the kinetochore corona (RPE1 Rod Δ/Δ ). In contrast, predictions of computational models based on continuous pulling forces at kinetochores differ significantly from the experimental observations. Together, live-cell observations and modeling reveal a novel mechanism that enables the efficient and synchronized arrival of chromosomes to the spindle equator. Significance Statement: For equal segregation into daughter cells, chromosomes, scattered in a large volume at the onset of cell division, must congress into a narrow plate near the equator of the mitotic spindle. Molecular mechanisms of congression remain obscure. Here we use live-cell microscopy and structural analyses to quantitatively characterize chromosome behavior during congression in human cells. From these quantifications we derive a computational model that accurately predicts directionality and velocity of chromosome movements and suggests that the force for these movements arises from stochastic, transient, minus-end directed interactions between short microtubules protruding from the kinetochores and long appropriately shaped microtubules within the spindle. The model also accurately predicts changes in chromosome behavior in cells with functionally deficient kinetochores.
- 21 August 2025
- Published by Elsevier in Biophysical Journal
- Vol. 124 (19) , 3174-3188
Branching, crosslinking, and decentralization of microtubules accelerates intracellular assembly
- 21 August 2025
- Published by Elsevier in Biophysical Journal
- Vol. 124 (19) , 3174-3188
Branching, crosslinking, and decentralization of microtubules accelerates intracellular assembly