Yixuan Sun
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Previous Organizations / Institutes
The organizations / institutes from the scholar's other articles in the past ten years
Research Subjects
Yixuan Sun has a total of 71 co-authors. Here are the top co-authors by number of shared publications:
- Luke Van Roekel
Los Alamos National Laboratory (LANL), Los Alamos, NM (United States)
7 shared publications - Sri Hari Krishna Narayanan
Argonne National Lab
7 shared publications - Sandeep Madireddy
Argonne National Laboratory, Lemont, Illinois, USA
6 shared publications - Guang Lin
School of Mechanical Engineering, Purdue University, West Lafayette, USA
5 shared publications - Prasanna Balaprakash
Oak Ridge National Laboratory, USA
5 shared publications - Steven Richard Brus
Mathematics and Computer Science Division Argonne National Laboratory Lemont IL USA
4 shared publications
Latest Publications
- Open Access
- 19 August 2026
- Published by Association for Computing Machinery (ACM) in ACM Transactions on AI for Science
Matrix-free Neural Preconditioner for the Dirac Operator in Lattice Gauge Theory
Linear systems arise in generating samples and in calculating observables in lattice quantum chromodynamics (QCD). Solving the Hermitian positive definite systems, which are sparse but ill-conditioned, involves using iterative methods, such as Conjugate Gradient (CG), which are time-consuming and computationally expensive. Preconditioners can effectively accelerate this process, with the state-of-the-art being multigrid preconditioners. However, constructing useful preconditioners can be challenging, adding additional computational overhead, especially in large linear systems. We propose a framework, leveraging operator learning techniques, to construct linear maps as effective preconditioners. The method in this work does not rely on explicit matrices from either the original linear systems or the produced preconditioners, allowing efficient model training and application in the CG solver. In the context of the Schwinger model ( \(U(1)\) gauge theory in 1+1 spacetime dimensions with two degenerate-mass fermions), this preconditioning scheme effectively decreases the condition number of the linear systems and approximately halves the number of iterations required for convergence in relevant parameter ranges. We further demonstrate the framework learns a general mapping dependent on the lattice structure which leads to zero-shot learning ability for the Dirac operators constructed from gauge field configurations of different sizes.- 19 August 2026
- Published by Association for Computing Machinery (ACM) in ACM Transactions on AI for Science
Open AccessMatrix-free Neural Preconditioner for the Dirac Operator in Lattice Gauge Theory
Linear systems arise in generating samples and in calculating observables in lattice quantum chromodynamics (QCD). Solving the Hermitian positive definite systems, which are sparse but ill-conditioned, involves using iterative methods, such as Conjugate Gradient (CG), which are time-consuming and computationally expensive. Preconditioners can effectively accelerate this process, with the state-of-the-art being multigrid preconditioners. However, constructing useful preconditioners can be challenging, adding additional computational overhead, especially in large linear systems. We propose a framework, leveraging operator learning techniques, to construct linear maps as effective preconditioners. The method in this work does not rely on explicit matrices from either the original linear systems or the produced preconditioners, allowing efficient model training and application in the CG solver. In the context of the Schwinger model ( \(U(1)\) gauge theory in 1+1 spacetime dimensions with two degenerate-mass fermions), this preconditioning scheme effectively decreases the condition number of the linear systems and approximately halves the number of iterations required for convergence in relevant parameter ranges. We further demonstrate the framework learns a general mapping dependent on the lattice structure which leads to zero-shot learning ability for the Dirac operators constructed from gauge field configurations of different sizes. - Open Access
- 6 July 2026
- Published by Elsevier in Geodata and AI
- Vol. 9
Innovating Saltwater Intrusion Monitoring: Deep Learning-Driven Sensor Fusion for Soil Salinity and Moisture Measurement
- 6 July 2026
- Published by Elsevier in Geodata and AI
- Vol. 9
Open AccessInnovating Saltwater Intrusion Monitoring: Deep Learning-Driven Sensor Fusion for Soil Salinity and Moisture Measurement
- Open Access
Chance-constrained Flow Matching for High-Fidelity Constraint-aware Generation
Generative models excel at synthesizing high-fidelity samples from complex data distributions, but they often violate hard constraints arising from physical laws or task specifications. A common remedy is to project intermediate samples onto the feasible set; however, repeated projection can distort the learned distribution and induce a mismatch with the data manifold. Thus, recent multi-stage procedures attempt to defer projection to clean samples during sampling, but they increase algorithmic complexity and accumulate errors across steps. This paper addresses these challenges by proposing a novel training-free method, Chance-constrained Flow Matching (CCFM), that integrates stochastic optimization into the sampling process, enabling effective enforcement of hard constraints while maintaining high-fidelity sample generation. Importantly, CCFM guarantees feasibility in the same manner as conventional repeated projection, yet, despite operating directly on noisy intermediate samples, it is theoretically equivalent to projecting onto the feasible set defined by clean samples. This yields a sampler that mitigates distributional distortion. Empirical experiments show that CCFM outperforms current state-of-the-art constrained generative models in modeling complex physical systems governed by partial differential equations and molecular docking problems, delivering higher feasibility and fidelity.
Open AccessChance-constrained Flow Matching for High-Fidelity Constraint-aware Generation
Generative models excel at synthesizing high-fidelity samples from complex data distributions, but they often violate hard constraints arising from physical laws or task specifications. A common remedy is to project intermediate samples onto the feasible set; however, repeated projection can distort the learned distribution and induce a mismatch with the data manifold. Thus, recent multi-stage procedures attempt to defer projection to clean samples during sampling, but they increase algorithmic complexity and accumulate errors across steps. This paper addresses these challenges by proposing a novel training-free method, Chance-constrained Flow Matching (CCFM), that integrates stochastic optimization into the sampling process, enabling effective enforcement of hard constraints while maintaining high-fidelity sample generation. Importantly, CCFM guarantees feasibility in the same manner as conventional repeated projection, yet, despite operating directly on noisy intermediate samples, it is theoretically equivalent to projecting onto the feasible set defined by clean samples. This yields a sampler that mitigates distributional distortion. Empirical experiments show that CCFM outperforms current state-of-the-art constrained generative models in modeling complex physical systems governed by partial differential equations and molecular docking problems, delivering higher feasibility and fidelity.
- Open Access
Ensembles of Neural Surrogates for Parametric Sensitivity in Ocean Modeling
Accurate simulations of the oceans are crucial in understanding the Earth system. Despite their efficiency, simulations at lower resolutions must rely on various uncertain parameterizations to account for unresolved processes. However, model sensitivity to parameterizations is difficult to quantify, making it challenging to tune these parameterizations to reproduce observations. Deep learning surrogates have shown promise for efficient computation of the parametric sensitivities in the form of partial derivatives, but their reliability is difficult to evaluate without ground truth derivatives. In this work, we leverage large-scale hyperparameter search and ensemble learning to improve both forward predictions, autoregressive rollout, and backward adjoint sensitivity estimation. Particularly, the ensemble method provides epistemic uncertainty of function value predictions and their derivatives, providing improved reliability of the neural surrogates in decision making.
Open AccessEnsembles of Neural Surrogates for Parametric Sensitivity in Ocean Modeling
Accurate simulations of the oceans are crucial in understanding the Earth system. Despite their efficiency, simulations at lower resolutions must rely on various uncertain parameterizations to account for unresolved processes. However, model sensitivity to parameterizations is difficult to quantify, making it challenging to tune these parameterizations to reproduce observations. Deep learning surrogates have shown promise for efficient computation of the parametric sensitivities in the form of partial derivatives, but their reliability is difficult to evaluate without ground truth derivatives. In this work, we leverage large-scale hyperparameter search and ensemble learning to improve both forward predictions, autoregressive rollout, and backward adjoint sensitivity estimation. Particularly, the ensemble method provides epistemic uncertainty of function value predictions and their derivatives, providing improved reliability of the neural surrogates in decision making.
- Open Access
- 26 August 2025
- Published by IOP Publishing in Machine Learning: Science and Technology
- Vol. 6 (3) , 035041
Spatiotemporal forecasting of the edge localized modes in tokamak plasmas using neural networks
Artificial intelligence techniques have been increasingly adopted by the plasma and fusion science to address problems like plasma reconstruction, surrogate modeling, and tokamak/stellarator optimization. A key focus in sustained fusion research is the prediction and mitigation of edge-localized-modes (ELMs), instabilities that occur in short, periodic bursts and can cause erosion to the tokamak vessel wall. Recent research has demonstrated the power of neural networks in approximating continuous functions. In this work, we build spatiotemporal forecasting models that can predict the onset of ELMs and their evolution at early stages. We leverage recent advances in generative modeling, sequence-to-sequence modeling, and Fourier neural operators to propose architectures and training strategies that can learn to forecast short to long term dynamics of the noisy signals due to ELMs. We benchmark the developed model against a state-of-the-art foundation model using the beam emission spectroscopy (BES) data that captures the plasma fluctuations due to ELMs over a 8 × 8 spatial grid. Our models demonstrate high accuracy, outperforming the baselines, in predicting the evolution of BES signals during ELM events. Furthermore, the developed models exhibit high accuracy in predicting the rapid rise and relaxation of the signals due to ELMs within 30–80 µs.
- 26 August 2025
- Published by IOP Publishing in Machine Learning: Science and Technology
- Vol. 6 (3) , 035041
Open AccessSpatiotemporal forecasting of the edge localized modes in tokamak plasmas using neural networks
Artificial intelligence techniques have been increasingly adopted by the plasma and fusion science to address problems like plasma reconstruction, surrogate modeling, and tokamak/stellarator optimization. A key focus in sustained fusion research is the prediction and mitigation of edge-localized-modes (ELMs), instabilities that occur in short, periodic bursts and can cause erosion to the tokamak vessel wall. Recent research has demonstrated the power of neural networks in approximating continuous functions. In this work, we build spatiotemporal forecasting models that can predict the onset of ELMs and their evolution at early stages. We leverage recent advances in generative modeling, sequence-to-sequence modeling, and Fourier neural operators to propose architectures and training strategies that can learn to forecast short to long term dynamics of the noisy signals due to ELMs. We benchmark the developed model against a state-of-the-art foundation model using the beam emission spectroscopy (BES) data that captures the plasma fluctuations due to ELMs over a 8 × 8 spatial grid. Our models demonstrate high accuracy, outperforming the baselines, in predicting the evolution of BES signals during ELM events. Furthermore, the developed models exhibit high accuracy in predicting the rapid rise and relaxation of the signals due to ELMs within 30–80 µs.
- Open Access
Generalizable Implicit Neural Representations via Parameterized Latent Dynamics for Baroclinic Ocean Forecasting
Mesoscale ocean dynamics play a critical role in climate systems, governing heat transport, hurricane genesis, and drought patterns. However, simulating these processes at high resolution remains computationally prohibitive due to their nonlinear, multiscale nature and vast spatiotemporal domains. Implicit neural representations (INRs) reduce the computational costs as resolution-independent surrogates but fail in many-query scenarios (inverse modeling) requiring rapid evaluations across diverse parameters. We present PINROD, a novel framework combining dynamics-aware implicit neural representations with parameterized neural ordinary differential equations to address these limitations. By integrating parametric dependencies into latent dynamics, our method efficiently captures nonlinear oceanic behavior across varying boundary conditions and physical parameters. Experiments on ocean mesoscale activity data show superior accuracy over existing baselines and improved computational efficiency compared to standard numerical simulations.
Open AccessGeneralizable Implicit Neural Representations via Parameterized Latent Dynamics for Baroclinic Ocean Forecasting
Mesoscale ocean dynamics play a critical role in climate systems, governing heat transport, hurricane genesis, and drought patterns. However, simulating these processes at high resolution remains computationally prohibitive due to their nonlinear, multiscale nature and vast spatiotemporal domains. Implicit neural representations (INRs) reduce the computational costs as resolution-independent surrogates but fail in many-query scenarios (inverse modeling) requiring rapid evaluations across diverse parameters. We present PINROD, a novel framework combining dynamics-aware implicit neural representations with parameterized neural ordinary differential equations to address these limitations. By integrating parametric dependencies into latent dynamics, our method efficiently captures nonlinear oceanic behavior across varying boundary conditions and physical parameters. Experiments on ocean mesoscale activity data show superior accuracy over existing baselines and improved computational efficiency compared to standard numerical simulations.
- Open Access
- 25 September 2024
- Published by MDPI AG in Journal of Composites Science
- Vol. 8 (10) , 387
Predicting Mechanical Properties from Microstructure Images in Fiber-Reinforced Polymers Using Convolutional Neural Networks
Evaluating the mechanical response of fiber-reinforced composites can be extremely time-consuming and expensive. Machine learning (ML) techniques offer a means for faster predictions via models trained on existing input–output pairs and have exhibited success in composite research. This paper explores a fully convolutional neural network modified from StressNet, which was originally used for linear elastic materials, and extended here for a non-linear finite element (FE) simulation to predict the stress field in 2D slices of segmented tomography images of a fiber-reinforced polymer specimen. The network was trained and evaluated on data generated from the FE simulations of the exact microstructure. The testing results show that the trained network accurately captures the characteristics of the stress distribution, especially on fibers, solely from the segmented microstructure images. The trained model can make predictions within seconds in a single forward pass on an ordinary laptop, given the input microstructure, compared to 92.5 h to run the full FE simulation on a high-performance computing cluster. These results show promise in using ML techniques to conduct fast structural analysis for fiber-reinforced composites and suggest a corollary that the trained model can be used to identify the location of potential damage sites in fiber-reinforced polymers.
- 25 September 2024
- Published by MDPI AG in Journal of Composites Science
- Vol. 8 (10) , 387
Open AccessPredicting Mechanical Properties from Microstructure Images in Fiber-Reinforced Polymers Using Convolutional Neural Networks
Evaluating the mechanical response of fiber-reinforced composites can be extremely time-consuming and expensive. Machine learning (ML) techniques offer a means for faster predictions via models trained on existing input–output pairs and have exhibited success in composite research. This paper explores a fully convolutional neural network modified from StressNet, which was originally used for linear elastic materials, and extended here for a non-linear finite element (FE) simulation to predict the stress field in 2D slices of segmented tomography images of a fiber-reinforced polymer specimen. The network was trained and evaluated on data generated from the FE simulations of the exact microstructure. The testing results show that the trained network accurately captures the characteristics of the stress distribution, especially on fibers, solely from the segmented microstructure images. The trained model can make predictions within seconds in a single forward pass on an ordinary laptop, given the input microstructure, compared to 92.5 h to run the full FE simulation on a high-performance computing cluster. These results show promise in using ML techniques to conduct fast structural analysis for fiber-reinforced composites and suggest a corollary that the trained model can be used to identify the location of potential damage sites in fiber-reinforced polymers.
- Open Access
- 3 June 2024
- Published by Association for Computing Machinery (ACM)
- p. 1-10
Parametric Sensitivities of a Wind-driven Baroclinic Ocean Using Neural Surrogates
Numerical models of the ocean and ice sheets are crucial for understanding and simulating the impact of greenhouse gases on the global climate. Oceanic processes affect phenomena such as hurricanes, extreme precipitation, and droughts. Ocean models rely on subgrid-scale parameterizations that require calibration and often significantly affect model skill. When model sensitivities to parameters can be computed by using approaches such as automatic differentiation, they can be used for such calibration toward reducing the misfit between model output and data. Because the SOMA model code is challenging to differentiate, we have created neural network-based surrogates for estimating the sensitivity of the ocean model to model parameters. We first generated perturbed parameter ensemble data for an idealized ocean model and trained three surrogate neural network models. The neural surrogates accurately predicted the one-step forward ocean dynamics, of which we then computed the parametric sensitivity.
- 3 June 2024
- Published by Association for Computing Machinery (ACM)
- p. 1-10
Open AccessParametric Sensitivities of a Wind-driven Baroclinic Ocean Using Neural Surrogates
Numerical models of the ocean and ice sheets are crucial for understanding and simulating the impact of greenhouse gases on the global climate. Oceanic processes affect phenomena such as hurricanes, extreme precipitation, and droughts. Ocean models rely on subgrid-scale parameterizations that require calibration and often significantly affect model skill. When model sensitivities to parameters can be computed by using approaches such as automatic differentiation, they can be used for such calibration toward reducing the misfit between model output and data. Because the SOMA model code is challenging to differentiate, we have created neural network-based surrogates for estimating the sensitivity of the ocean model to model parameters. We first generated perturbed parameter ensemble data for an idealized ocean model and trained three surrogate neural network models. The neural surrogates accurately predicted the one-step forward ocean dynamics, of which we then computed the parametric sensitivity.
- Open Access
- 10 May 2024
- Published by MDPI AG in Mathematics
- Vol. 12 (10) , 1483
Streamlining Ocean Dynamics Modeling with Fourier Neural Operators: A Multiobjective Hyperparameter and Architecture Optimization Approach
Training an effective deep learning model to learn ocean processes involves careful choices of various hyperparameters. We leverage DeepHyper’s advanced search algorithms for multiobjective optimization, streamlining the development of neural networks tailored for ocean modeling. The focus is on optimizing Fourier neural operators (FNOs), a data-driven model capable of simulating complex ocean behaviors. Selecting the correct model and tuning the hyperparameters are challenging tasks, requiring much effort to ensure model accuracy. DeepHyper allows efficient exploration of hyperparameters associated with data preprocessing, FNO architecture-related hyperparameters, and various model training strategies. We aim to obtain an optimal set of hyperparameters leading to the most performant model. Moreover, on top of the commonly used mean squared error for model training, we propose adopting the negative anomaly correlation coefficient as the additional loss term to improve model performance and investigate the potential trade-off between the two terms. The numerical experiments show that the optimal set of hyperparameters enhanced model performance in single timestepping forecasting and greatly exceeded the baseline configuration in the autoregressive rollout for long-horizon forecasting up to 30 days. Utilizing DeepHyper, we demonstrate an approach to enhance the use of FNO in ocean dynamics forecasting, offering a scalable solution with improved precision.
- 10 May 2024
- Published by MDPI AG in Mathematics
- Vol. 12 (10) , 1483
Open AccessStreamlining Ocean Dynamics Modeling with Fourier Neural Operators: A Multiobjective Hyperparameter and Architecture Optimization Approach
Training an effective deep learning model to learn ocean processes involves careful choices of various hyperparameters. We leverage DeepHyper’s advanced search algorithms for multiobjective optimization, streamlining the development of neural networks tailored for ocean modeling. The focus is on optimizing Fourier neural operators (FNOs), a data-driven model capable of simulating complex ocean behaviors. Selecting the correct model and tuning the hyperparameters are challenging tasks, requiring much effort to ensure model accuracy. DeepHyper allows efficient exploration of hyperparameters associated with data preprocessing, FNO architecture-related hyperparameters, and various model training strategies. We aim to obtain an optimal set of hyperparameters leading to the most performant model. Moreover, on top of the commonly used mean squared error for model training, we propose adopting the negative anomaly correlation coefficient as the additional loss term to improve model performance and investigate the potential trade-off between the two terms. The numerical experiments show that the optimal set of hyperparameters enhanced model performance in single timestepping forecasting and greatly exceeded the baseline configuration in the autoregressive rollout for long-horizon forecasting up to 30 days. Utilizing DeepHyper, we demonstrate an approach to enhance the use of FNO in ocean dynamics forecasting, offering a scalable solution with improved precision.
- Open Access
Parametric Sensitivities of a Wind-driven Baroclinic Ocean Using Neural Surrogates
Numerical models of the ocean and ice sheets are crucial for understanding and simulating the impact of greenhouse gases on the global climate. Oceanic processes affect phenomena such as hurricanes, extreme precipitation, and droughts. Ocean models rely on subgrid-scale parameterizations that require calibration and often significantly affect model skill. When model sensitivities to parameters can be computed by using approaches such as automatic differentiation, they can be used for such calibration toward reducing the misfit between model output and data. Because the SOMA model code is challenging to differentiate, we have created neural network-based surrogates for estimating the sensitivity of the ocean model to model parameters. We first generated perturbed parameter ensemble data for an idealized ocean model and trained three surrogate neural network models. The neural surrogates accurately predicted the one-step forward ocean dynamics, of which we then computed the parametric sensitivity.
Open AccessParametric Sensitivities of a Wind-driven Baroclinic Ocean Using Neural Surrogates
Numerical models of the ocean and ice sheets are crucial for understanding and simulating the impact of greenhouse gases on the global climate. Oceanic processes affect phenomena such as hurricanes, extreme precipitation, and droughts. Ocean models rely on subgrid-scale parameterizations that require calibration and often significantly affect model skill. When model sensitivities to parameters can be computed by using approaches such as automatic differentiation, they can be used for such calibration toward reducing the misfit between model output and data. Because the SOMA model code is challenging to differentiate, we have created neural network-based surrogates for estimating the sensitivity of the ocean model to model parameters. We first generated perturbed parameter ensemble data for an idealized ocean model and trained three surrogate neural network models. The neural surrogates accurately predicted the one-step forward ocean dynamics, of which we then computed the parametric sensitivity.