SSSimon Schubotz

Simon Schubotz

*This is an algorithmically generated author record based on publicly available information.

Current Organizations / Institutes

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Previous Organizations / Institutes

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Simon Schubotz has a total of 25 co-authors. Here are the top co-authors by number of shared publications:


Latest Publications

  • Open Access

    Releasing Protein Cargo from Synthetic Cells by Coupling Cell-Free Expression to Osmotic Actuation

    by Hongfei Liu, Jérémie J. M. Marlhens, Simon Schubotz, Heinz Koeppl

    Macromolecular release from synthetic cells often relies on membrane pores or channels. We explored whether internally generated osmotic stress could increase membrane permeability and promote release. Using double-emulsion microfluidics, we encapsulated an Escherichia coli cell-free expression system in Pluronic L121 polymersomes to co-express the fluorescent protein mScarlet3 and the dextranase PsDex1711 in the presence of dextran. PsDex1711-mediated dextran hydrolysis produced a greater increase in bulk osmolality than reactions without PsDex1711 DNA. Tracking hundreds of individual polymersomes showed that PsDex1711-containing populations expanded, whereas control populations contracted. The distribution of normalized fluorescence revealed a subset with lower residual fluorescence than the main population. In selected expanded polymersomes, integrated internal mScarlet3 fluorescence declined to 18–22 % of peak levels, without visible membrane disruption, consistent with protein release. These findings support a proof of concept for using internal gene expression to promote macromolecular release through osmotic actuation without introducing dedicated membrane pores.

  • Spreading of a viscoelastic drop on a solid substrate

    by Peyman Rostami, Mathis Fricke, Simon Schubotz, Himanshu Patel, Reza Azizmalayeri, Günter K. Auernhammer

    We study the spreading of Newtonian viscous (aqueous glycerin solution) and viscoelastic (aqueous polymer solution) drops on solid substrates with different wettabilities. For drops of the same zero-shear viscosity, we find in the early stages of spreading that viscoelastic drops (i) spread faster and (ii) their contact radius shows a different power law vs time than Newtonian drops. We argue that the effect of viscoelasticity is only observable for experimental time scales of the order of or larger than the internal relaxation time of the viscoelastic polymer solution. We attribute this behaviour to the shear thinning of the viscoelastic polymer solution. When approaching the contact line, the shear rate increases and the steady-state viscosity of the viscoelastic drop is lower than that of the Newtonian drop. We support our experimental findings with a simple (first-order) perturbation model that qualitatively agrees with our findings.


  • Influence of the Atmosphere on the Wettability of Polymer Brushes

    by Simon Schubotz, Quinn A. Besford, Saghar Nazari, Petra Uhlmann, Eva Bittrich, Jens-Uwe Sommer, Günter K. Auernhammer

    Polymer brushes, i.e., end-tethered polymer chains on substrates, are sensitive to adaptation, e.g., swelling, adsorption, and reorientation of the surface molecules. This adaptation can originate from a contacting liquid or atmosphere for partially wetted substrates. The macroscopic contact angle of the aqueous drop can depend on both adaptation mechanisms. We analyze how the atmosphere around an aqueous droplet determines the resulting contact angle of the wetting droplet on polymer brush surfaces. Poly(N-isopropylacrylamide) (PNiPAAm)-based brushes are used due to their exceptional sensitivity to solvation and liquid mixture composition. We develop a method that reliably measures wetting properties when the drop and the surrounding atmosphere are not in equilibrium, e.g., when evaporation and condensation tend to contaminate the liquid of the drop and the atmosphere. For this purpose, we use a coaxial needle in the droplet, which continuously exchanges the wetting liquid, and in addition, we constantly exchange the almost saturated atmosphere. Depending on the wetting history, PNiPAAm can be prepared in two states, state A with a large water contact angle (∼65°) and state B with a small water contact angle (∼25°). With the coaxial needle, we can demonstrate that the water contact angle of a sample in state B significantly increases by ∼30° when a water-free atmosphere is almost saturated with ethanol, compared to an ethanol-free atmosphere at 50% relative humidity. For a sample in state A, the relative humidity has little influence on the water contact angle.


  • Open Access

    Molecular Transport within Polymer Brushes: A FRET View at Aqueous Interfaces

    by Quinn A. Besford, Simon Schubotz, Soosang Chae, Ayşe B. Özdabak Sert, Alessia C. G. Weiss, Günter K. Auernhammer, Petra Uhlmann, José Paulo S. Farinha, Andreas Fery

    Molecular permeability through polymer brush chains is implicated in surface lubrication, wettability, and solute capture and release. Probing molecular transport through polymer brushes can reveal information on the polymer nanostructure, with a permeability that is dependent on chain conformation and grafting density. Herein, we introduce a brush system to study the molecular transport of fluorophores from an aqueous droplet into the external “dry” polymer brush with the vapour phase above. The brushes consist of a random copolymer of N-isopropylacrylamide and a Förster resonance energy transfer (FRET) donor-labelled monomer, forming ultrathin brush architectures of about 35 nm in solvated height. Aqueous droplets containing a separate FRET acceptor are placed onto the surfaces, with FRET monitored spatially around the 3-phase contact line. FRET is used to monitor the transport from the droplet to the outside brush, and the changing internal distributions with time as the droplets prepare to recede. This reveals information on the dynamics and distances involved in the molecular transport of the FRET acceptor towards and away from the droplet contact line, which are strongly dependent on the relative humidity of the system. We anticipate our system to be extremely useful for studying lubrication dynamics and surface droplet wettability processes.


  • Open Access

    Electronic Laboratory Notebook: A lazy approach

    by Simon Schubotz, Moritz Schubotz, Günter K Auernhammer

    Good research data management is essential in modern-day lab work. Various solutions exist that are either highly specific or need a significant effort to be customized appropriately. This paper presents an integrated solution for individuals and small groups of researchers in data-driven deductive research. Our electronic lab book generates itself out of notes and files, which are generated by one or several experiments. The generated electronic lab book is then presented on a Django-based website. The automated gathering of metadata significantly reduces the documentation effort for the lab worker and prevents human error in the repetitive task of manually entering basic meta-data. The skilled user can quickly adapt the electronic lab book software to his needs because the software employs widely used open-source software libraries with active communities and excellent documentation.

  • Memory effects in polymer brushes showing co-nonsolvency effects

    by Simon Schubotz, Christian Honnigfort, Saghar Nazari, Andreas Fery, Jens-Uwe Sommer, Petra Uhlmann, Björn Braunschweig, Günter K. Auernhammer