Getahun Mulugeta
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Previous Organizations / Institutes
The organizations / institutes from the scholar's other articles in the past ten years
Research Subjects
Getahun Mulugeta has a total of 9 co-authors. Here are the top co-authors by number of shared publications:
Awoke Seyoum Tegegne
Department of Statistics, Bahir Dar University, Bahir Dar, Ethiopia
2 shared publications- Awoke Seyoum Tegegne
Department of Statistics Bahir Dar University Bahir Dar Ethiopia
2 shared publications Leja Hamza Juhar
Kidney Transplant Center, St. Paul’s Hospital Millennium Medical College, Addis Ababa, Ethiopia
2 shared publicationsMahteme Bekele Muleta
Kidney Transplant Center, St. Paul’s Hospital Millennium Medical College, Addis Ababa, Ethiopia
2 shared publicationsTemesgen Zewotir
School of Mathematics, Statistics & Computer Science, KwaZulu Natal University, Durban, South Africa
2 shared publications- Dagne Tesfaye Mengistie
Department of Statistics, College of Natural and Computational Science, Jigjiga University, Jigjiga, Ethiopia
1 shared publication
Latest Publications
- Open Access
- 3 February 2025
- Published by Springer Nature in BMC Medical Informatics and Decision Making
- Vol. 25 (1) , 1-13
Developing clinical prognostic models to predict graft survival after renal transplantation: comparison of statistical and machine learning models
Renal transplantation is a critical treatment for end-stage renal disease, but graft failure remains a significant concern. Accurate prediction of graft survival is crucial to identify high-risk patients. This study aimed to develop prognostic models for predicting renal graft survival and compare the performance of statistical and machine learning models. The study utilized data from 278 renal transplant recipients at the Ethiopian National Kidney Transplantation Center between September 2015 and February 2022. To address the class imbalance of the data, SMOTE resampling was applied. Various models were evaluated, including Standard and penalized Cox models, Random Survival Forest, and Stochastic Gradient Boosting. Prognostic predictors were selected based on statistical significance and variable importance. The median graft survival time was 33 months, and the mean hazard of graft failure was 0.0755. The 3-month, 1-year, and 3-year graft survival rates were found to be 0.979, 0.953, and 0.911, respectively. The Stochastic Gradient Boosting (SGB) model demonstrated the best discrimination and calibration performance, with a C-index of 0.943 and a Brier score of 0.000351. The Ridge-based Cox model closely followed the SGB model’s prediction performance with better interpretability. The key prognostic predictors of graft survival included an episode of acute and chronic rejections, post-transplant urological complications, post-transplant nonadherence, blood urea nitrogen level, post-transplant regular exercise, and marital status. The Stochastic Gradient Boosting model demonstrated the highest predictive performance, while the Ridge-Cox model offered better interpretability with a comparable performance. Clinicians should consider the trade-off between prediction accuracy and interpretability when selecting a model. Incorporating these findings into the clinical practice can improve risk stratification and personalized management strategies for kidney transplant recipients.
- 3 February 2025
- Published by Springer Nature in BMC Medical Informatics and Decision Making
- Vol. 25 (1) , 1-13
Open AccessDeveloping clinical prognostic models to predict graft survival after renal transplantation: comparison of statistical and machine learning models
Renal transplantation is a critical treatment for end-stage renal disease, but graft failure remains a significant concern. Accurate prediction of graft survival is crucial to identify high-risk patients. This study aimed to develop prognostic models for predicting renal graft survival and compare the performance of statistical and machine learning models. The study utilized data from 278 renal transplant recipients at the Ethiopian National Kidney Transplantation Center between September 2015 and February 2022. To address the class imbalance of the data, SMOTE resampling was applied. Various models were evaluated, including Standard and penalized Cox models, Random Survival Forest, and Stochastic Gradient Boosting. Prognostic predictors were selected based on statistical significance and variable importance. The median graft survival time was 33 months, and the mean hazard of graft failure was 0.0755. The 3-month, 1-year, and 3-year graft survival rates were found to be 0.979, 0.953, and 0.911, respectively. The Stochastic Gradient Boosting (SGB) model demonstrated the best discrimination and calibration performance, with a C-index of 0.943 and a Brier score of 0.000351. The Ridge-based Cox model closely followed the SGB model’s prediction performance with better interpretability. The key prognostic predictors of graft survival included an episode of acute and chronic rejections, post-transplant urological complications, post-transplant nonadherence, blood urea nitrogen level, post-transplant regular exercise, and marital status. The Stochastic Gradient Boosting model demonstrated the highest predictive performance, while the Ridge-Cox model offered better interpretability with a comparable performance. Clinicians should consider the trade-off between prediction accuracy and interpretability when selecting a model. Incorporating these findings into the clinical practice can improve risk stratification and personalized management strategies for kidney transplant recipients.
- Open Access
- 3 April 2024
- Published by Springer Nature in Research Square
Developing Clinical Prognostic Models to Predict Graft Survival after Renal Transplantation: Comparison of Statistical and Machine Learning Models
Introduction: Renal transplantation is a critical treatment that can save the lives of individuals who are suffering from end-stage renal disease (ESRD), but graft failure remains a significant concern. Accurate prediction of graft survival after renal transplantation is crucial as it enables clinicians to identify patients at higher risk of graft failure. This study aimed to develop clinical prognostic models for predicting graft survival after renal transplantation and compare the performance of various statistical and machine learning models. Methodology: The study utilized data from a retrospective cohort of renal transplant recipients at the Ethiopian National Kidney Transplantation Center from September 2015 to February 2022. Various statistical and machine learning models were evaluated based on their discrimination, calibration, and interpretability. The comparison of models included standard Cox, Lasso-Cox, Ridge-Cox, Elastic net-Cox, Random Survival Forest, and Stochastic Gradient Boosting. The prognostic predictors of graft survival were selected based on the significance and relative importance of variables in different models. Results The study analyzed a total of 278 completed cases and observed the event of graft failure in 21 patients. The median graft survival time was 33 months, and the mean hazard of graft failure was 0.0755. The results revealed that the 1-year, 3-year, and 5-year graft survival rates are 0.936, 0.924, and 0.914 respectively. The study found that the Random Survival Forest and Stochastic Gradient Boosting models demonstrated the best calibration and discrimination performance shown by an equal AUC of 0.97 and the overlapped calibration plots. On the other hand, the Cox proportional hazards model has the highest interpretability and established superior accuracy in estimating survival probabilities, as evidenced by its lowest Brier score of 0.000071. The current study indicates that an episode of chronic rejection, recipient residence, an episode of acute rejection, post-transplant urological complications, post-transplant nonadherence, blood urea nitrogen level, and number of post-transplant admissions were consistently identified as the top significant prognostic predictors of renal graft survival. Conclusions The Random Survival Forest and Stochastic Gradient Boosting models demonstrated superior calibration and discrimination performance, while the Cox proportional hazards model offered accurate estimation of survival probabilities and interpretability. Clinicians should consider the trade-off between performance and interpretability when choosing a model. Incorporating these findings into clinical practice can improve risk stratification, enable early interventions, and inform personalized management strategies for kidney transplant recipients.
- 3 April 2024
- Published by Springer Nature in Research Square
Open AccessDeveloping Clinical Prognostic Models to Predict Graft Survival after Renal Transplantation: Comparison of Statistical and Machine Learning Models
Introduction: Renal transplantation is a critical treatment that can save the lives of individuals who are suffering from end-stage renal disease (ESRD), but graft failure remains a significant concern. Accurate prediction of graft survival after renal transplantation is crucial as it enables clinicians to identify patients at higher risk of graft failure. This study aimed to develop clinical prognostic models for predicting graft survival after renal transplantation and compare the performance of various statistical and machine learning models. Methodology: The study utilized data from a retrospective cohort of renal transplant recipients at the Ethiopian National Kidney Transplantation Center from September 2015 to February 2022. Various statistical and machine learning models were evaluated based on their discrimination, calibration, and interpretability. The comparison of models included standard Cox, Lasso-Cox, Ridge-Cox, Elastic net-Cox, Random Survival Forest, and Stochastic Gradient Boosting. The prognostic predictors of graft survival were selected based on the significance and relative importance of variables in different models. Results The study analyzed a total of 278 completed cases and observed the event of graft failure in 21 patients. The median graft survival time was 33 months, and the mean hazard of graft failure was 0.0755. The results revealed that the 1-year, 3-year, and 5-year graft survival rates are 0.936, 0.924, and 0.914 respectively. The study found that the Random Survival Forest and Stochastic Gradient Boosting models demonstrated the best calibration and discrimination performance shown by an equal AUC of 0.97 and the overlapped calibration plots. On the other hand, the Cox proportional hazards model has the highest interpretability and established superior accuracy in estimating survival probabilities, as evidenced by its lowest Brier score of 0.000071. The current study indicates that an episode of chronic rejection, recipient residence, an episode of acute rejection, post-transplant urological complications, post-transplant nonadherence, blood urea nitrogen level, and number of post-transplant admissions were consistently identified as the top significant prognostic predictors of renal graft survival. Conclusions The Random Survival Forest and Stochastic Gradient Boosting models demonstrated superior calibration and discrimination performance, while the Cox proportional hazards model offered accurate estimation of survival probabilities and interpretability. Clinicians should consider the trade-off between performance and interpretability when choosing a model. Incorporating these findings into clinical practice can improve risk stratification, enable early interventions, and inform personalized management strategies for kidney transplant recipients.
- Open Access
- 22 May 2023
- Published by Springer Nature in BMC Medical Informatics and Decision Making
- Vol. 23 (1) , 1-17
Classification of imbalanced data using machine learning algorithms to predict the risk of renal graft failures in Ethiopia
Introduction: The prevalence of end-stage renal disease has raised the need for renal replacement therapy over recent decades. Even though a kidney transplant offers an improved quality of life and lower cost of care than dialysis, graft failure is possible after transplantation. Hence, this study aimed to predict the risk of graft failure among post-transplant recipients in Ethiopia using the selected machine learning prediction models. Methodology: The data was extracted from the retrospective cohort of kidney transplant recipients at the Ethiopian National Kidney Transplantation Center from September 2015 to February 2022. In response to the imbalanced nature of the data, we performed hyperparameter tuning, probability threshold moving, tree-based ensemble learning, stacking ensemble learning, and probability calibrations to improve the prediction results. Merit-based selected probabilistic (logistic regression, naive Bayes, and artificial neural network) and tree-based ensemble (random forest, bagged tree, and stochastic gradient boosting) models were applied. Model comparison was performed in terms of discrimination and calibration performance. The best-performing model was then used to predict the risk of graft failure. Results: A total of 278 completed cases were analyzed, with 21 graft failures and 3 events per predictor. Of these, 74.8% are male, and 25.2% are female, with a median age of 37. From the comparison of models at the individual level, the bagged tree and random forest have top and equal discrimination performance (AUC-ROC = 0.84). In contrast, the random forest has the best calibration performance (brier score = 0.045). Under testing the individual model as a meta-learner for stacking ensemble learning, the result of stochastic gradient boosting as a meta-learner has the top discrimination (AUC-ROC = 0.88) and calibration (brier score = 0.048) performance. Regarding feature importance, chronic rejection, blood urea nitrogen, number of post-transplant admissions, phosphorus level, acute rejection, and urological complications are the top predictors of graft failure. Conclusions: Bagging, boosting, and stacking, with probability calibration, are good choices for clinical risk predictions working on imbalanced data. The data-driven probability threshold is more beneficial than the natural threshold of 0.5 to improve the prediction result from imbalanced data. Integrating various techniques in a systematic framework is a smart strategy to improve prediction results from imbalanced data. It is recommended for clinical experts in kidney transplantation to use the final calibrated model as a decision support system to predict the risk of graft failure for individual patients.
- 22 May 2023
- Published by Springer Nature in BMC Medical Informatics and Decision Making
- Vol. 23 (1) , 1-17
Open AccessClassification of imbalanced data using machine learning algorithms to predict the risk of renal graft failures in Ethiopia
Introduction: The prevalence of end-stage renal disease has raised the need for renal replacement therapy over recent decades. Even though a kidney transplant offers an improved quality of life and lower cost of care than dialysis, graft failure is possible after transplantation. Hence, this study aimed to predict the risk of graft failure among post-transplant recipients in Ethiopia using the selected machine learning prediction models. Methodology: The data was extracted from the retrospective cohort of kidney transplant recipients at the Ethiopian National Kidney Transplantation Center from September 2015 to February 2022. In response to the imbalanced nature of the data, we performed hyperparameter tuning, probability threshold moving, tree-based ensemble learning, stacking ensemble learning, and probability calibrations to improve the prediction results. Merit-based selected probabilistic (logistic regression, naive Bayes, and artificial neural network) and tree-based ensemble (random forest, bagged tree, and stochastic gradient boosting) models were applied. Model comparison was performed in terms of discrimination and calibration performance. The best-performing model was then used to predict the risk of graft failure. Results: A total of 278 completed cases were analyzed, with 21 graft failures and 3 events per predictor. Of these, 74.8% are male, and 25.2% are female, with a median age of 37. From the comparison of models at the individual level, the bagged tree and random forest have top and equal discrimination performance (AUC-ROC = 0.84). In contrast, the random forest has the best calibration performance (brier score = 0.045). Under testing the individual model as a meta-learner for stacking ensemble learning, the result of stochastic gradient boosting as a meta-learner has the top discrimination (AUC-ROC = 0.88) and calibration (brier score = 0.048) performance. Regarding feature importance, chronic rejection, blood urea nitrogen, number of post-transplant admissions, phosphorus level, acute rejection, and urological complications are the top predictors of graft failure. Conclusions: Bagging, boosting, and stacking, with probability calibration, are good choices for clinical risk predictions working on imbalanced data. The data-driven probability threshold is more beneficial than the natural threshold of 0.5 to improve the prediction result from imbalanced data. Integrating various techniques in a systematic framework is a smart strategy to improve prediction results from imbalanced data. It is recommended for clinical experts in kidney transplantation to use the final calibrated model as a decision support system to predict the risk of graft failure for individual patients.
- Open Access
- 22 September 2022
- Published by Springer Nature in BMC Nutrition
- Vol. 8 (1) , 1-10
Predictors for the duration of breastfeeding among ethiopia women of childbearing age with babies; application of accelerate failure time and parametric shared frailty models
Introduction: Duration of breastfeeding is the length of the time that infants who were initially breastfed continue to receive breast milk until weaning. The duration of breastfeeding is important for a child's health, growth, and development. However, the duration of breastfeeding decreases from time to time and further leads children to be exposed to malnutrition (stunting, wasting, and weight loss). Children who did not get enough breastfeeding are also exposed to different diseases. Previous studies used a simple survival model and didn’t see the shared frailty model on the variable of interest. Therefore, the current study aimed to investigate the factors affecting the duration of breastfeeding among Ethiopian women of reproductive age with babies. Methods: A cross-sectional study design was conducted on 15,400 women of childbearing age with babies in nine regional states and two city administrations. The data source for the analysis was the 2016 EDHS data. The Cox-proportional hazard model, AFT, and parametric shared frailty models were conducted for the current investigation. Weibull-gamma shared frailty model was in favor of others for current data analysis. Results: Among the covariates, women living in urban area (Φ = 0.96; 95% CI; (0.94,0.97); p-value = 0.001), non-educated women(Φ = 1.03; 95% CI; (1.00,1.06); p-value = 0.039), primary educated women (Φ = 1.13; 95% CI; (1.11,1.15); p-value < 0.001), age of a child (Φ = 0.99; 95% CI; (0.76.0.99); p-value < 0.001) and non-smoker mothers (Φ = 1.60; 95% CI; (1.57, 1.63); p-value < 0.001),birth interval between 2–3 years(Φ = 1.02; 95% CI;(1.09, 1.25, p-value = 0.027), birth interval, > 3 years(Φ = 1.28; 95% CI; (1.06, 1.43); p-value < 0.01 significantly affected the duration of breastfeeding. The median survival time of breastfeeding of women of reproductive age with babies considered under study was 23.4 months. Clustering had a significant effect on the variable of interest. Conclusion: Residence area, level of education, age of the child, smoking status of women, and birth interval of successive birth significantly affected the duration of breastfeeding in the current investigation. Hence, the health staff should conduct health-related education for young women, educated women, urban women, smoker women, and women with a shorter interval of birth to increase the women's attitude and awareness towards the use of long-duration of breastfeeding.
- 22 September 2022
- Published by Springer Nature in BMC Nutrition
- Vol. 8 (1) , 1-10
Open AccessPredictors for the duration of breastfeeding among ethiopia women of childbearing age with babies; application of accelerate failure time and parametric shared frailty models
Introduction: Duration of breastfeeding is the length of the time that infants who were initially breastfed continue to receive breast milk until weaning. The duration of breastfeeding is important for a child's health, growth, and development. However, the duration of breastfeeding decreases from time to time and further leads children to be exposed to malnutrition (stunting, wasting, and weight loss). Children who did not get enough breastfeeding are also exposed to different diseases. Previous studies used a simple survival model and didn’t see the shared frailty model on the variable of interest. Therefore, the current study aimed to investigate the factors affecting the duration of breastfeeding among Ethiopian women of reproductive age with babies. Methods: A cross-sectional study design was conducted on 15,400 women of childbearing age with babies in nine regional states and two city administrations. The data source for the analysis was the 2016 EDHS data. The Cox-proportional hazard model, AFT, and parametric shared frailty models were conducted for the current investigation. Weibull-gamma shared frailty model was in favor of others for current data analysis. Results: Among the covariates, women living in urban area (Φ = 0.96; 95% CI; (0.94,0.97); p-value = 0.001), non-educated women(Φ = 1.03; 95% CI; (1.00,1.06); p-value = 0.039), primary educated women (Φ = 1.13; 95% CI; (1.11,1.15); p-value < 0.001), age of a child (Φ = 0.99; 95% CI; (0.76.0.99); p-value < 0.001) and non-smoker mothers (Φ = 1.60; 95% CI; (1.57, 1.63); p-value < 0.001),birth interval between 2–3 years(Φ = 1.02; 95% CI;(1.09, 1.25, p-value = 0.027), birth interval, > 3 years(Φ = 1.28; 95% CI; (1.06, 1.43); p-value < 0.01 significantly affected the duration of breastfeeding. The median survival time of breastfeeding of women of reproductive age with babies considered under study was 23.4 months. Clustering had a significant effect on the variable of interest. Conclusion: Residence area, level of education, age of the child, smoking status of women, and birth interval of successive birth significantly affected the duration of breastfeeding in the current investigation. Hence, the health staff should conduct health-related education for young women, educated women, urban women, smoker women, and women with a shorter interval of birth to increase the women's attitude and awareness towards the use of long-duration of breastfeeding.
- Open Access
- 1 January 2015
- Published by Science Publishing Group in American Journal of Theoretical and Applied Statistics
- Vol. 4 (5) , 389
Identifying Factors for Marriage Breakdown at Debre Birhan Town of Ethiopia: Logistic and Survival Analysis
Marriage breakdown is a condition in which partners of a marital union cease to live together especially due to divorce or separation. The main objective of this study is identifying factors for marriage breakdown. To achieve this sample of 576 respondents was taken using stratified random sampling method, during March 2012. From descriptive statistics we have seen that about 41.7% of the first marriage was broken in Debre Birhan town. A series of statistical analysis have done: factors for marriage breakdown were analyzed using binary logistic regression and time to marriage breakdown was analyzed by Cox proportional hazard model. From the binary logistic regression we have seen that being infertile, marry at age of 12-18 years (early marriage), sexual incompatibility, unfaithfulness, absence of discussion and illiterate husbands are exposed to the risk of marriage break down. From the Cox proportional hazard model we have seen that; spouses who are infertile, marry b/n 12-18 years for females, too low (10 years) age gap, having different religion, sexual incompatibility and unfaithfulness leads to the shorter survival time of first marriage. Finally we have recommend that Spouses should have a habit of discussion, specially on sexual issue, youth should insure that they have the potential to pursue marriage its responsibility before coming to the institution. Awareness creation and counseling service should have given about the effect of early marriage, the importance of legal- marriage, impact of religion difference of spouses and gender equality.
- 1 January 2015
- Published by Science Publishing Group in American Journal of Theoretical and Applied Statistics
- Vol. 4 (5) , 389
Open AccessIdentifying Factors for Marriage Breakdown at Debre Birhan Town of Ethiopia: Logistic and Survival Analysis
Marriage breakdown is a condition in which partners of a marital union cease to live together especially due to divorce or separation. The main objective of this study is identifying factors for marriage breakdown. To achieve this sample of 576 respondents was taken using stratified random sampling method, during March 2012. From descriptive statistics we have seen that about 41.7% of the first marriage was broken in Debre Birhan town. A series of statistical analysis have done: factors for marriage breakdown were analyzed using binary logistic regression and time to marriage breakdown was analyzed by Cox proportional hazard model. From the binary logistic regression we have seen that being infertile, marry at age of 12-18 years (early marriage), sexual incompatibility, unfaithfulness, absence of discussion and illiterate husbands are exposed to the risk of marriage break down. From the Cox proportional hazard model we have seen that; spouses who are infertile, marry b/n 12-18 years for females, too low (10 years) age gap, having different religion, sexual incompatibility and unfaithfulness leads to the shorter survival time of first marriage. Finally we have recommend that Spouses should have a habit of discussion, specially on sexual issue, youth should insure that they have the potential to pursue marriage its responsibility before coming to the institution. Awareness creation and counseling service should have given about the effect of early marriage, the importance of legal- marriage, impact of religion difference of spouses and gender equality.