Cristobal Oyarzun

Backyard poultry systems (BPS) are the most widespread form of animal production worldwide, contributing to household economies and improving food availability. However, limited biosecurity measures and close human–animal interactions raise concerns regarding zoonotic disease transmission. In recent years, consumer-driven motivations have given rise to non-traditional BPS with differential attributes (BPS-DA), yet there is limited knowledge about their food production practices. This study aimed to characterize and compare practices across 25 BPS and 25 BPS-DA in the Metropolitan Region using surveys, interviews, and direct observations of egg collections and poultry slaughters. Eggs were the main animal product in both systems, with women primarily responsible for care. Poultry slaughter was reported exclusively in BPS (60%), generally performed under inadequate hygienic conditions and without veterinary oversight. These practices, (poultry slaughter, food production and handling), may considerably increase the risk of human exposure to zoonotic pathogens, such as avian influenza viruses. In contrast, BPS-DA prioritized birds as companion animals (60%), free-range rearing (68%), and hobby-based production (80%). While both systems showed limited biosecurity, significant differences were found in the use of dedicated footwear (p = 0.01; V = 0.35), egg collection sites (p = 0.04; V = 0.29), and refrigeration (p = 0.004; V = 0.41). Veterinary access was limited in both (32% in BPS; 44% in BPS-DA). These findings highlight critical gaps in health management and underscore the need for context-specific educational and regulatory strategies for safer backyard poultry production.

Backyard poultry systems (BPS) are the most widespread form of animal production worldwide, contributing to household economies and improving food availability. However, limited biosecurity measures and close human–animal interactions raise concerns regarding zoonotic disease transmission. In recent years, consumer-driven motivations have given rise to non-traditional BPS with differential attributes (BPS-DA), yet there is limited knowledge about their food production practices. This study aimed to characterize and compare practices across 25 BPS and 25 BPS-DA in the Metropolitan Region using surveys, interviews, and direct observations of egg collections and poultry slaughters. Eggs were the main animal product in both systems, with women primarily responsible for care. Poultry slaughter was reported exclusively in BPS (60%), generally performed under inadequate hygienic conditions and without veterinary oversight. These practices, (poultry slaughter and by-food production), may considerably increase the risk of human exposure to zoonotic pathogens, such as avian influenza viruses. In contrast, BPS-DA prioritized birds as companion animals (60%), free-range rearing (68%), and hobby-based production (80%). While both systems showed limited biosecurity, significant differences were found in the use of dedicated footwear (p = 0.01), egg collection sites (p = 0.04), and refrigeration (p = 0.004). Veterinary access was limited in both. These findings highlight critical gaps in health management and underscore the need for context-specific educational and regulatory strategies for safer backyard poultry production.

The Lluta River is the northernmost coastal wetland in Chile, representing a unique ecosystem and an important source of water in the extremely arid Atacama Desert. During peak season, the wetland is home to more than 150 species of wild birds and is the first stopover point for many migratory species that arrive in the country along the Pacific migratory route, thereby representing a priority site for avian influenza virus (AIV) surveillance in Chile. The aim of this study was to determine the prevalence of influenza A virus (IAV) in the Lluta River wetland, identify subtype diversity, and evaluate ecological and environmental factors that drive the prevalence at the study site. The wetland was studied and sampled from September 2015 to October 2020. In each visit, fresh fecal samples of wild birds were collected for IAV detection by real-time RT-PCR. Furthermore, a count of wild birds present at the site was performed and environmental variables, such as temperature, rainfall, vegetation coverage (Normalized Difference Vegetation Index—NDVI), and water body size were determined. A generalized linear mixed model (GLMM) was built to assess the association between AIV prevalence and explanatory variables. Influenza positive samples were sequenced, and the host species was determined by barcoding. Of the 4349 samples screened during the study period, overall prevalence in the wetland was 2.07% (95% CI: 1.68 to 2.55) and monthly prevalence of AIV ranged widely from 0% to 8.6%. Several hemagglutinin (HA) and neuraminidase (NA) subtypes were identified, and 10 viruses were isolated and sequenced, including low pathogenic H5, H7, and H9 strains. In addition, several reservoir species were recognized (both migratory and resident birds), including the newly identified host Chilean flamingo (Phoenicopterus chilensis). Regarding environmental variables, prevalence of AIV was positively associated with NDVI (OR = 3.65, p < 0.05) and with the abundance of migratory birds (OR = 3.57, p < 0.05). These results emphasize the importance of the Lluta wetland as a gateway to Chile for viruses that come from the Northern Hemisphere and contribute to the understanding of AIV ecological drivers.

The Lluta River is the northernmost coastal wetland in Chile, representing a unique ecosystem and an important source of water in the extremely arid Atacama Desert. During peak season, the wetland is home to more than 150 species of wild birds and is the first stopover point for many migratory species that arrive in the country along the Pacific migratory route, representing a priority site for avian influenza virus (AIV) surveillance in Chile. The aim of this study was to determine the prevalence of influenza A virus (IAV) in the Lluta River wetland, to identify subtype diversity and to evaluate ecological and environmental factors that drive the prevalence at the study site. The wetland was studied and sampled from September 2015 to October 2020. In each visit, fresh fecal environmental samples (n = 178) of wild birds were collected for IAV detection by real-time RT-PCR. Furthermore, a count of wild birds present at the site was performed and environmental variables, such as temperature, rainfall, vegetation coverage (Normalized Difference Vegetation Index - NDVI) and water body size were determined. A generalized linear mixed model (GLMM) was built to assess the association between AIV prevalence and explanatory variables. Influenza positive samples were sequenced, and the host species was determined by barcoding. Of the 4,349 samples screened during the study period, overall prevalence in the wetland was 2.07% (95% CI: 1.68 to 2.55) and monthly prevalence of AIV ranged widely from 0% to 8.6%. A great diversity of hemagglutinin (HA) and neuraminidase (NA) subtypes were identified, and 10 viruses were isolated and sequenced, including low pathogenic H5, H7 and H9 strains. In addition, several reservoir species were recognized (both migratory and resident birds), including the newly identified host Chilean flamingo (Phoenicopterus chilensis). Regarding environmental variables, prevalence of AIV was positively associated with NDVI (OR=3.65, p<0.05) and with the abundance of migratory birds (OR=3.57, p<0.05). These results emphasize the importance of the Lluta wetland as a gateway to Chile for viruses that come from the Northern Hemisphere and contribute to the understanding of AIV ecological drivers.