Shalom Michaeli
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Previous Organizations / Institutes
The organizations / institutes from the scholar's other articles in the past ten years
Shalom Michaeli has a total of 70 co-authors. Here are the top co-authors by number of shared publications:
Silvia Mangia
Department of Radiology, Center for Magnetic Resonance Research (CMRR), University of Minnesota, Minneapolis, MN, USA
5 shared publications- Silvia Mangia
Center for Magnetic Resonance Research, University of Minnesota, Minneapolis, MN, USA
5 shared publications Lin Wu
Department of Radiology, Center for Magnetic Resonance Research (CMRR), University of Minnesota, Minneapolis, MN, USA
4 shared publicationsOlli Gröhn
A. I. Virtanen Institute for Molecular Sciences, University of Eastern Finland, Kuopio, Finland
4 shared publicationsDennis J. Sorce
Independent Researcher, 6 Stonegate Court, Cockeysville, MD 21030, USA
3 shared publicationsHeikki Tanila
A. I. Virtanen Institute for Molecular Sciences, University of Eastern Finland, Kuopio, Finland
3 shared publications
Latest Publications
- Open Access
- 17 June 2026
- Published by Elsevier in Journal of Magnetic Resonance
- Vol. 390, 108115
Altering MRI rotating frame relaxations by changing the truncation level of Hyperbolic Secant pulse
- 17 June 2026
- Published by Elsevier in Journal of Magnetic Resonance
- Vol. 390, 108115
Open AccessAltering MRI rotating frame relaxations by changing the truncation level of Hyperbolic Secant pulse
- Open Access
- 25 February 2026
- Published by Elsevier in Journal of Magnetic Resonance
- Vol. 386, 108041
R1ρ relaxation functions for weak, intermediate and strong collision models, revisited for frequency swept RF pulses
- 25 February 2026
- Published by Elsevier in Journal of Magnetic Resonance
- Vol. 386, 108041
Open AccessR1ρ relaxation functions for weak, intermediate and strong collision models, revisited for frequency swept RF pulses
- Open Access
Simultaneous zero echo time fMRI of rat brain and spinal cord
Purpose Functional assessments of the central nervous system (CNS) are essential for many areas of research. Functional MRI (fMRI) typically targets either the brain or the spinal cord, but usually not both, due to the obstacles associated with simultaneous image acquisitions from distant fields of view (FOVs) with conventional MRI. In this work, we establish a novel MRI approach that enables artefact-free, quiet, simultaneous fMRI of both brain and spinal cord, avoiding the need for dynamic shimming procedures. Methods We utilized zero echo time (TE) Multi-Band-SWeep Imaging with Fourier Transformation (MB-SWIFT) technique at 9.4T in a simultaneous dual-FOV configuration and two separate radio frequency (RF) transmit-receive surface coils. The first coil covered the rat brain, while the second was positioned approximately at the T13-L1 level of the rat”s spinal cord with copper shielding to minimize the coupling between the RF coils. Eight Sprague–Dawley rats were used for hindlimb stimulation fMRI studies. Results Robust and specific activations were detected in both the brain and spinal cord during hind paw stimulation at individual and group levels. The results established the feasibility of the novel approach for simultaneous functional assessment of the lumbar spinal cord and brain in rats. Conclusion This study demonstrated the feasibility of a novel dual-FOV fMRI approach based on zero-TE MB-SWIFT and set the stage for translation to humans. The methodology enables comprehensive functional CNS evaluations of great value in different conditions such as pain, spinal cord injury, neurodegenerative diseases, and aging.
Open AccessSimultaneous zero echo time fMRI of rat brain and spinal cord
Purpose Functional assessments of the central nervous system (CNS) are essential for many areas of research. Functional MRI (fMRI) typically targets either the brain or the spinal cord, but usually not both, due to the obstacles associated with simultaneous image acquisitions from distant fields of view (FOVs) with conventional MRI. In this work, we establish a novel MRI approach that enables artefact-free, quiet, simultaneous fMRI of both brain and spinal cord, avoiding the need for dynamic shimming procedures. Methods We utilized zero echo time (TE) Multi-Band-SWeep Imaging with Fourier Transformation (MB-SWIFT) technique at 9.4T in a simultaneous dual-FOV configuration and two separate radio frequency (RF) transmit-receive surface coils. The first coil covered the rat brain, while the second was positioned approximately at the T13-L1 level of the rat”s spinal cord with copper shielding to minimize the coupling between the RF coils. Eight Sprague–Dawley rats were used for hindlimb stimulation fMRI studies. Results Robust and specific activations were detected in both the brain and spinal cord during hind paw stimulation at individual and group levels. The results established the feasibility of the novel approach for simultaneous functional assessment of the lumbar spinal cord and brain in rats. Conclusion This study demonstrated the feasibility of a novel dual-FOV fMRI approach based on zero-TE MB-SWIFT and set the stage for translation to humans. The methodology enables comprehensive functional CNS evaluations of great value in different conditions such as pain, spinal cord injury, neurodegenerative diseases, and aging.
- 23 January 2025
- Published by Elsevier in Journal of Magnetic Resonance
- Vol. 372, 107840
On the geometric phase effects on time evolution of the density matrix during modulated radiofrequency pulses
- 23 January 2025
- Published by Elsevier in Journal of Magnetic Resonance
- Vol. 372, 107840
On the geometric phase effects on time evolution of the density matrix during modulated radiofrequency pulses
- 2 December 2024
- Published by Elsevier in Journal of Magnetic Resonance
- Vol. 370, 107809
Complete solution for rotating frame relaxation functions during adiabatic pulses
- 2 December 2024
- Published by Elsevier in Journal of Magnetic Resonance
- Vol. 370, 107809
Complete solution for rotating frame relaxation functions during adiabatic pulses
- Open Access
Sleep quality and the integrity of ascending reticular activating system – A multimodal MRI study
- Open Access
- 27 June 2024
- Published by MDPI AG in Brain Sciences
- Vol. 14 (7) , 650
Selective Activation of the Spinal Cord with Epidural Electrical Stimulation
Spinal cord epidural electrical stimulation (EES) has been successfully employed to treat chronic pain and to restore lost functions after spinal cord injury. Yet, the efficacy of this approach is largely challenged by the suboptimal spatial distribution of the electrode contacts across anatomical targets, limiting the spatial selectivity of stimulation. In this study, we exploited different ESS paradigms, designed as either Spatial-Selective Stimulation (SSES) or Orientation-Selective Epidural Stimulation (OSES), and compared them to Conventional Monopolar Epidural Stimulation (CMES). SSES, OSES, and CMES were delivered with a 3- or 4-contact electrode array. Amplitudes and latencies of the Spinally Evoked Motor Potentials (SEMPs) were evaluated with different EES modalities. The results demonstrate that the amplitudes of SEMPs in hindlimb muscles depend on the orientation of the electrical field and vary between stimulation modalities. These findings show that the electric field applied with SSES or OSES provides more selective control of amplitudes of the SEMPs as compared to CMES. We demonstrate that spinal cord epidural stimulation applied with SSES or OSES paradigms in the rodent model could be tailored to the functional spinal cord neuroanatomy and can be tuned to specific target fibers and their orientation, optimizing the effect of neuromodulation.
- 27 June 2024
- Published by MDPI AG in Brain Sciences
- Vol. 14 (7) , 650
Open AccessSelective Activation of the Spinal Cord with Epidural Electrical Stimulation
Spinal cord epidural electrical stimulation (EES) has been successfully employed to treat chronic pain and to restore lost functions after spinal cord injury. Yet, the efficacy of this approach is largely challenged by the suboptimal spatial distribution of the electrode contacts across anatomical targets, limiting the spatial selectivity of stimulation. In this study, we exploited different ESS paradigms, designed as either Spatial-Selective Stimulation (SSES) or Orientation-Selective Epidural Stimulation (OSES), and compared them to Conventional Monopolar Epidural Stimulation (CMES). SSES, OSES, and CMES were delivered with a 3- or 4-contact electrode array. Amplitudes and latencies of the Spinally Evoked Motor Potentials (SEMPs) were evaluated with different EES modalities. The results demonstrate that the amplitudes of SEMPs in hindlimb muscles depend on the orientation of the electrical field and vary between stimulation modalities. These findings show that the electric field applied with SSES or OSES provides more selective control of amplitudes of the SEMPs as compared to CMES. We demonstrate that spinal cord epidural stimulation applied with SSES or OSES paradigms in the rodent model could be tailored to the functional spinal cord neuroanatomy and can be tuned to specific target fibers and their orientation, optimizing the effect of neuromodulation.
- Open Access
- 1 August 2023
- Published by AIP Publishing in AIP Advances
- Vol. 13 (8) , 085210
On the geometric phases during radio frequency pulses with sine and cosine amplitude and frequency modulation
In this work, we describe the formation of geometric phases during nonadiabatic frequency swept (FS) radio frequency (RF) pulses with sine amplitude modulation and cosine frequency modulation functions. The geometric phases during the FS pulse were analyzed using a Schrödinger equation formalism, and the unified analytical expression for the geometric phase was derived. We present the solutions for sub-geometric phase components incorporated in spinor wavefunctions for the RF Hamiltonian of spin ½ nuclei. We demonstrate that the geometric phases during sine/cosine RF pulses are opposite in signs for different initial conditions of the spinor and that geometric phases can accumulate in correspondence to different magnetization trajectories. The derived formalism could be extended for the evaluation of the geometric phases during a wide class of amplitude- and frequency-modulated pulses used in MRI and in high-resolution NMR.
- 1 August 2023
- Published by AIP Publishing in AIP Advances
- Vol. 13 (8) , 085210
Open AccessOn the geometric phases during radio frequency pulses with sine and cosine amplitude and frequency modulation
In this work, we describe the formation of geometric phases during nonadiabatic frequency swept (FS) radio frequency (RF) pulses with sine amplitude modulation and cosine frequency modulation functions. The geometric phases during the FS pulse were analyzed using a Schrödinger equation formalism, and the unified analytical expression for the geometric phase was derived. We present the solutions for sub-geometric phase components incorporated in spinor wavefunctions for the RF Hamiltonian of spin ½ nuclei. We demonstrate that the geometric phases during sine/cosine RF pulses are opposite in signs for different initial conditions of the spinor and that geometric phases can accumulate in correspondence to different magnetization trajectories. The derived formalism could be extended for the evaluation of the geometric phases during a wide class of amplitude- and frequency-modulated pulses used in MRI and in high-resolution NMR.
- Open Access
- 21 June 2023
- Published by Wiley in Journal of Neurochemistry
- Vol. 168 (5) , 632-662
Neurovascular coupling is optimized to compensate for the increase in proton production from nonoxidative glycolysis and glycogenolysis during brain activation and maintain homeostasis of pH, pCO2, and pO2
During transient brain activation cerebral blood flow (CBF) increases substantially more than cerebral metabolic rate of oxygen consumption (CMRO2) resulting in blood hyperoxygenation, the basis of BOLD‐fMRI contrast. Explanations for the high CBF versus CMRO2 slope, termed neurovascular coupling (NVC) constant, focused on maintenance of tissue oxygenation to support mitochondrial ATP production. However, paradoxically the brain has a 3‐fold lower oxygen extraction fraction (OEF) than other organs with high energy requirements, like heart and muscle during exercise. Here, we hypothesize that the NVC constant and the capillary oxygen mass transfer coefficient (which in combination determine OEF) are co‐regulated during activation to maintain simultaneous homeostasis of pH and partial pressure of CO2 and O2 (pCO2 and pO2). To test our hypothesis, we developed an arteriovenous flux balance model for calculating blood and brain pH, pCO2, and pO2 as a function of baseline OEF (OEF0), CBF, CMRO2, and proton production by nonoxidative metabolism coupled to ATP hydrolysis. Our model was validated against published brain arteriovenous difference studies and then used to calculate pH, pCO2, and pO2 in activated human cortex from published calibrated fMRI and PET measurements. In agreement with our hypothesis, calculated pH, pCO2, and pO2 remained close to constant independently of CMRO2 in correspondence to experimental measurements of NVC and OEF0. We also found that the optimum values of the NVC constant and OEF0 that ensure simultaneous homeostasis of pH, pCO2, and pO2 were remarkably similar to their experimental values. Thus, the high NVC constant is overall determined by proton removal by CBF due to increases in nonoxidative glycolysis and glycogenolysis. These findings resolve the paradox of the brain's high CBF yet low OEF during activation, and may contribute to explaining the vulnerability of brain function to reductions in blood flow and capillary density with aging and neurovascular disease. image
- 21 June 2023
- Published by Wiley in Journal of Neurochemistry
- Vol. 168 (5) , 632-662
Open AccessNeurovascular coupling is optimized to compensate for the increase in proton production from nonoxidative glycolysis and glycogenolysis during brain activation and maintain homeostasis of pH, pCO2, and pO2
During transient brain activation cerebral blood flow (CBF) increases substantially more than cerebral metabolic rate of oxygen consumption (CMRO2) resulting in blood hyperoxygenation, the basis of BOLD‐fMRI contrast. Explanations for the high CBF versus CMRO2 slope, termed neurovascular coupling (NVC) constant, focused on maintenance of tissue oxygenation to support mitochondrial ATP production. However, paradoxically the brain has a 3‐fold lower oxygen extraction fraction (OEF) than other organs with high energy requirements, like heart and muscle during exercise. Here, we hypothesize that the NVC constant and the capillary oxygen mass transfer coefficient (which in combination determine OEF) are co‐regulated during activation to maintain simultaneous homeostasis of pH and partial pressure of CO2 and O2 (pCO2 and pO2). To test our hypothesis, we developed an arteriovenous flux balance model for calculating blood and brain pH, pCO2, and pO2 as a function of baseline OEF (OEF0), CBF, CMRO2, and proton production by nonoxidative metabolism coupled to ATP hydrolysis. Our model was validated against published brain arteriovenous difference studies and then used to calculate pH, pCO2, and pO2 in activated human cortex from published calibrated fMRI and PET measurements. In agreement with our hypothesis, calculated pH, pCO2, and pO2 remained close to constant independently of CMRO2 in correspondence to experimental measurements of NVC and OEF0. We also found that the optimum values of the NVC constant and OEF0 that ensure simultaneous homeostasis of pH, pCO2, and pO2 were remarkably similar to their experimental values. Thus, the high NVC constant is overall determined by proton removal by CBF due to increases in nonoxidative glycolysis and glycogenolysis. These findings resolve the paradox of the brain's high CBF yet low OEF during activation, and may contribute to explaining the vulnerability of brain function to reductions in blood flow and capillary density with aging and neurovascular disease. image
- Open Access
- 20 May 2022
- Published by Springer Nature in Scientific Reports
- Vol. 12 (1) , 1-14
Orientation selective DBS of entorhinal cortex and medial septal nucleus modulates activity of rat brain areas involved in memory and cognition
The recently introduced orientation selective deep brain stimulation (OS-DBS) technique freely controls the direction of the electric field’s spatial gradient by using multiple contacts with independent current sources within a multielectrode array. The goal of OS-DBS is to align the electrical field along the axonal track of interest passing through the stimulation site. Here we utilized OS-DBS with a planar 3-channel electrode for stimulating the rat entorhinal cortex (EC) and medial septal nucleus (MSN), two promising areas for DBS treatment of Alzheimer’s disease. The brain responses to OS-DBS were monitored by whole brain functional magnetic resonance imaging (fMRI) at 9.4 T with Multi-Band Sweep Imaging with Fourier Transformation (MB-SWIFT). Varying the in-plane OS-DBS stimulation angle in the EC resulted in activity modulation of multiple downstream brain areas involved in memory and cognition. Contrary to that, no angle dependence of brain activations was observed when stimulating the MSN, consistent with predictions based on the electrode configuration and on the main axonal directions of the targets derived from diffusion MRI tractography and histology. We conclude that tuning the OS-DBS stimulation angle modulates the activation of brain areas relevant to Alzheimer’s disease, thus holding great promise in the DBS treatment of the disease.
- 20 May 2022
- Published by Springer Nature in Scientific Reports
- Vol. 12 (1) , 1-14
Open AccessOrientation selective DBS of entorhinal cortex and medial septal nucleus modulates activity of rat brain areas involved in memory and cognition
The recently introduced orientation selective deep brain stimulation (OS-DBS) technique freely controls the direction of the electric field’s spatial gradient by using multiple contacts with independent current sources within a multielectrode array. The goal of OS-DBS is to align the electrical field along the axonal track of interest passing through the stimulation site. Here we utilized OS-DBS with a planar 3-channel electrode for stimulating the rat entorhinal cortex (EC) and medial septal nucleus (MSN), two promising areas for DBS treatment of Alzheimer’s disease. The brain responses to OS-DBS were monitored by whole brain functional magnetic resonance imaging (fMRI) at 9.4 T with Multi-Band Sweep Imaging with Fourier Transformation (MB-SWIFT). Varying the in-plane OS-DBS stimulation angle in the EC resulted in activity modulation of multiple downstream brain areas involved in memory and cognition. Contrary to that, no angle dependence of brain activations was observed when stimulating the MSN, consistent with predictions based on the electrode configuration and on the main axonal directions of the targets derived from diffusion MRI tractography and histology. We conclude that tuning the OS-DBS stimulation angle modulates the activation of brain areas relevant to Alzheimer’s disease, thus holding great promise in the DBS treatment of the disease.