Xiaohong Xie
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Xiaohong Xie has a total of 46 co-authors. Here are the top co-authors by number of shared publications:
Lala Sha
The First School of Clinical Medicine, Zhejiang Chinese Medical University, No. 548 Binwen Road, Hangzhou, Zhejiang, PR China
2 shared publicationsLeilai Xu
Department of Breast Surgery, The First Affiliated Hospital of Zhejiang Chinese Medical University, Hangzhou 310003, Zhejiang, China
2 shared publicationsXidong Gu
Department of Breast Surgery, The First Affiliated Hospital of Zhejiang Chinese Medical University, Hangzhou 310003, Zhejiang, China
2 shared publications- Xinbing Sui
School of Pharmacy, Hangzhou Normal University, Hangzhou 311121, China
2 shared publications - Yong Shen
Zhejiang Hospital of Traditional Chinese Medicine
2 shared publications Chunli Zhang
Department of pathology, The First Affiliated Hospital of Zhejiang Chinese Medical University, Hangzhou, Zhejiang, China
1 shared publication
Latest Publications
- 5 May 2026
- Published by Elsevier in Diagnostic Microbiology and Infectious Disease
- Vol. 116 (1) , 117444
Corrigendum to “Management of Finegoldia magna–Associated Non-Puerperal Breast Abscess in an Adolescent Integration of Surgical Source Control and Targeted Antimicrobial Therapy” [Diagnostic Microbiology & Infectious Disease 116 (2026) 117422]
- 5 May 2026
- Published by Elsevier in Diagnostic Microbiology and Infectious Disease
- Vol. 116 (1) , 117444
Corrigendum to “Management of Finegoldia magna–Associated Non-Puerperal Breast Abscess in an Adolescent Integration of Surgical Source Control and Targeted Antimicrobial Therapy” [Diagnostic Microbiology & Infectious Disease 116 (2026) 117422]
- 1 May 2026
- Published by Springer Nature in Supportive Care in Cancer
- Vol. 34 (5)
Multidisciplinary management gaps in cancer treatment–related skin toxicities
- 1 May 2026
- Published by Springer Nature in Supportive Care in Cancer
- Vol. 34 (5)
Multidisciplinary management gaps in cancer treatment–related skin toxicities
- Open Access
- 11 November 2025
- Published by Springer Nature in Breast Cancer Research
- Vol. 27 (1) , 1-22
The role and prognostic value of mitochondria-related gene PARK7 in breast cancer
Breast cancer is the most common malignant tumor among women globally, with incidence and mortality rates ranking first among female cancers. Mitochondrial dysfunction plays a crucial role in the occurrence, development, and metastasis of breast cancer, but the specific mechanisms remain unclear. This study aims to explore the mechanisms and prognostic value of the mitochondrial-related gene PARK7 in breast cancer. This study integrated summary data on the methylation levels, expression levels, and protein abundance of mitochondrial-related genes. The discovery phase data were sourced from the IEU GWAS database, while the validation phase data came from the FinnGen study dataset. Mendelian randomization and colocalization analyses were conducted to explore the potential associations between the methylation, expression, and protein abundance of mitochondrial-related genes and breast cancer risk. Clinical and pathological data, as well as gene expression data from breast cancer patients, were obtained from the TCGA database. Cox regression analysis was used to assess the relationship between PARK7 expression and clinical pathological features, and a prognostic model was constructed. Additionally, in vitro experiments were performed to verify the effects of PARK7 on triple-negative breast cancer cells. The study found that high expression of the PARK7 gene is closely related to a reduced risk of breast cancer (OR 0.91, 95% Cl 0.88–0.95; PPH4 = 0.90), which was also validated in the FinnGen dataset. Patients with high PARK7 expression had longer survival times and higher survival probabilities in the TCGA database. In vitro experiments showed that overexpression of PARK7 significantly inhibited the proliferation, migration, and colony formation of triple-negative breast cancer cells, while promoting apoptosis and significantly increasing mitochondrial membrane potential, indicating altered mitochondrial function. Furthermore, Western blot analysis revealed that overexpression of PARK7 led to increased PTEN protein expression and decreased p-PI3K and p-AKT protein expression, suggesting that PARK7 may exert its tumor-suppressive effects by modulating the PI3K/Akt signaling pathway. High expression of the PARK7 gene is closely related to reduced breast cancer risk and good prognosis, and it may exert its tumor-suppressive effects by regulating the expression of apoptosis-related proteins and migration-related proteins, as well as by affecting mitochondrial function and modulating the PI3K/Akt signaling pathway. It can serve as a potential biomarker for the diagnosis, treatment, and prognosis of breast cancer.
- 11 November 2025
- Published by Springer Nature in Breast Cancer Research
- Vol. 27 (1) , 1-22
Open AccessThe role and prognostic value of mitochondria-related gene PARK7 in breast cancer
Breast cancer is the most common malignant tumor among women globally, with incidence and mortality rates ranking first among female cancers. Mitochondrial dysfunction plays a crucial role in the occurrence, development, and metastasis of breast cancer, but the specific mechanisms remain unclear. This study aims to explore the mechanisms and prognostic value of the mitochondrial-related gene PARK7 in breast cancer. This study integrated summary data on the methylation levels, expression levels, and protein abundance of mitochondrial-related genes. The discovery phase data were sourced from the IEU GWAS database, while the validation phase data came from the FinnGen study dataset. Mendelian randomization and colocalization analyses were conducted to explore the potential associations between the methylation, expression, and protein abundance of mitochondrial-related genes and breast cancer risk. Clinical and pathological data, as well as gene expression data from breast cancer patients, were obtained from the TCGA database. Cox regression analysis was used to assess the relationship between PARK7 expression and clinical pathological features, and a prognostic model was constructed. Additionally, in vitro experiments were performed to verify the effects of PARK7 on triple-negative breast cancer cells. The study found that high expression of the PARK7 gene is closely related to a reduced risk of breast cancer (OR 0.91, 95% Cl 0.88–0.95; PPH4 = 0.90), which was also validated in the FinnGen dataset. Patients with high PARK7 expression had longer survival times and higher survival probabilities in the TCGA database. In vitro experiments showed that overexpression of PARK7 significantly inhibited the proliferation, migration, and colony formation of triple-negative breast cancer cells, while promoting apoptosis and significantly increasing mitochondrial membrane potential, indicating altered mitochondrial function. Furthermore, Western blot analysis revealed that overexpression of PARK7 led to increased PTEN protein expression and decreased p-PI3K and p-AKT protein expression, suggesting that PARK7 may exert its tumor-suppressive effects by modulating the PI3K/Akt signaling pathway. High expression of the PARK7 gene is closely related to reduced breast cancer risk and good prognosis, and it may exert its tumor-suppressive effects by regulating the expression of apoptosis-related proteins and migration-related proteins, as well as by affecting mitochondrial function and modulating the PI3K/Akt signaling pathway. It can serve as a potential biomarker for the diagnosis, treatment, and prognosis of breast cancer.
- Open Access
- 1 June 2025
- Published by Elsevier in Journal of Advanced Research
- Vol. 81, 637-656
Single-cell and spatial transcriptome profiling identifies cellular heterogeneity and immunosuppressive tumor microenvironment in inflammatory breast cancer
- 1 June 2025
- Published by Elsevier in Journal of Advanced Research
- Vol. 81, 637-656
Open AccessSingle-cell and spatial transcriptome profiling identifies cellular heterogeneity and immunosuppressive tumor microenvironment in inflammatory breast cancer
- Top Cited PapersOpen Access
- 14 August 2024
- Published by Springer Nature in Signal Transduction and Targeted Therapy
- Vol. 9 (1) , 1-24
Drug tolerant persister cell plasticity in cancer: a revolutionary strategy for more effective anticancer therapies
Non-genetic mechanisms have recently emerged as important drivers of anticancer drug resistance. Among these, the drug tolerant persister (DTP) cell phenotype is attracting more and more attention and giving a predominant non-genetic role in cancer therapy resistance. The DTP phenotype is characterized by a quiescent or slow-cell-cycle reversible state of the cancer cell subpopulation and inert specialization to stimuli, which tolerates anticancer drug exposure to some extent through the interaction of multiple underlying mechanisms and recovering growth and proliferation after drug withdrawal, ultimately leading to treatment resistance and cancer recurrence. Therefore, targeting DTP cells is anticipated to provide new treatment opportunities for cancer patients, although our current knowledge of these DTP cells in treatment resistance remains limited. In this review, we provide a comprehensive overview of the formation characteristics and underlying drug tolerant mechanisms of DTP cells, investigate the potential drugs for DTP (including preclinical drugs, novel use for old drugs, and natural products) based on different medicine models, and discuss the necessity and feasibility of anti-DTP therapy, related application forms, and future issues that will need to be addressed to advance this emerging field towards clinical applications. Nonetheless, understanding the novel functions of DTP cells may enable us to develop new more effective anticancer therapy and improve clinical outcomes for cancer patients.
- 14 August 2024
- Published by Springer Nature in Signal Transduction and Targeted Therapy
- Vol. 9 (1) , 1-24
Top Cited PapersOpen AccessDrug tolerant persister cell plasticity in cancer: a revolutionary strategy for more effective anticancer therapies
Non-genetic mechanisms have recently emerged as important drivers of anticancer drug resistance. Among these, the drug tolerant persister (DTP) cell phenotype is attracting more and more attention and giving a predominant non-genetic role in cancer therapy resistance. The DTP phenotype is characterized by a quiescent or slow-cell-cycle reversible state of the cancer cell subpopulation and inert specialization to stimuli, which tolerates anticancer drug exposure to some extent through the interaction of multiple underlying mechanisms and recovering growth and proliferation after drug withdrawal, ultimately leading to treatment resistance and cancer recurrence. Therefore, targeting DTP cells is anticipated to provide new treatment opportunities for cancer patients, although our current knowledge of these DTP cells in treatment resistance remains limited. In this review, we provide a comprehensive overview of the formation characteristics and underlying drug tolerant mechanisms of DTP cells, investigate the potential drugs for DTP (including preclinical drugs, novel use for old drugs, and natural products) based on different medicine models, and discuss the necessity and feasibility of anti-DTP therapy, related application forms, and future issues that will need to be addressed to advance this emerging field towards clinical applications. Nonetheless, understanding the novel functions of DTP cells may enable us to develop new more effective anticancer therapy and improve clinical outcomes for cancer patients.
- Open Access
- 1 August 2024
- Published by Bentham Science Publishers Ltd. in Current Pharmaceutical Design
- Vol. 30 (29) , 2313-2324
Elemene Injection Overcomes Paclitaxel Resistance in Breast Cancer through AR/RUNX1 Signal: Network Pharmacology and Experimental Validation
Background: Paclitaxel (PTX) is a cornerstone chemotherapy for Breast Cancer (BC), yet its impact is limited by emerging resistance. Elemene Injection (EI) has shown potential in overcoming chemotherapy resistance. However, the efficacy by which EI restores PTX sensitivity in BC and the implicated molecular mechanism remain uncharted. Methods: Network pharmacology and bioinformatic analysis were conducted to investigate the targets and mechanisms of EI in overcoming PTX resistance. A paclitaxel-resistant MCF-7 cell line (MCF-7PR) was established. The efficacy of EI and/or PTX in inhibiting cell viability was evaluated using sulforhodamine B assay, while cell proliferation was assessed using EdU staining. Furthermore, protein and gene expression analysis was performed through Western blotting and qPCR. Results: The EI containing three active components exhibited a multifaceted impact by targeting an extensive repertoire of 122 potential molecular targets. By intersecting with 761 differentially expressed genes, we successfully identified 9 genes that displayed a direct association with resistance to PTX in BC, presenting promising potential as therapeutic targets for the EI to effectively counteract PTX resistance. Enrichment analysis indicated a significant correlation between these identified targets and critical biological processes, particularly DNA damage response and cell cycle regulation. This correlation was further substantiated through meticulous analysis of single-cell datasets. Molecular docking analysis revealed robust binding affinities between the active components of the EI and the identified molecular targets. Subsequently, in vitro experiments unequivocally demonstrated the dose- and time-dependent inhibitory effects of the EI on both PTX-resistant and sensitive BC cell lines, effectively mitigating the resistance phenotype associated with PTX administration. Furthermore, our findings have indicated EI to effectively suppress the protein expression levels of AR and RUNX1 in MCF-7 and MCF-7PR cells under PTX treatment, as well as downregulate the mRNA expression levels of stem-like properties’ markers, KLF4 and OCT4, in these cell lines. Conclusion: Elemene Injection (EI) application has exhibited a significant capability to mitigate PTX resistance in BC, which has been achieved through targeted suppression of the AR/RUNX1 axis, revealing a key strategy to overcome chemotherapeutic resistance.
- 1 August 2024
- Published by Bentham Science Publishers Ltd. in Current Pharmaceutical Design
- Vol. 30 (29) , 2313-2324
Open AccessElemene Injection Overcomes Paclitaxel Resistance in Breast Cancer through AR/RUNX1 Signal: Network Pharmacology and Experimental Validation
Background: Paclitaxel (PTX) is a cornerstone chemotherapy for Breast Cancer (BC), yet its impact is limited by emerging resistance. Elemene Injection (EI) has shown potential in overcoming chemotherapy resistance. However, the efficacy by which EI restores PTX sensitivity in BC and the implicated molecular mechanism remain uncharted. Methods: Network pharmacology and bioinformatic analysis were conducted to investigate the targets and mechanisms of EI in overcoming PTX resistance. A paclitaxel-resistant MCF-7 cell line (MCF-7PR) was established. The efficacy of EI and/or PTX in inhibiting cell viability was evaluated using sulforhodamine B assay, while cell proliferation was assessed using EdU staining. Furthermore, protein and gene expression analysis was performed through Western blotting and qPCR. Results: The EI containing three active components exhibited a multifaceted impact by targeting an extensive repertoire of 122 potential molecular targets. By intersecting with 761 differentially expressed genes, we successfully identified 9 genes that displayed a direct association with resistance to PTX in BC, presenting promising potential as therapeutic targets for the EI to effectively counteract PTX resistance. Enrichment analysis indicated a significant correlation between these identified targets and critical biological processes, particularly DNA damage response and cell cycle regulation. This correlation was further substantiated through meticulous analysis of single-cell datasets. Molecular docking analysis revealed robust binding affinities between the active components of the EI and the identified molecular targets. Subsequently, in vitro experiments unequivocally demonstrated the dose- and time-dependent inhibitory effects of the EI on both PTX-resistant and sensitive BC cell lines, effectively mitigating the resistance phenotype associated with PTX administration. Furthermore, our findings have indicated EI to effectively suppress the protein expression levels of AR and RUNX1 in MCF-7 and MCF-7PR cells under PTX treatment, as well as downregulate the mRNA expression levels of stem-like properties’ markers, KLF4 and OCT4, in these cell lines. Conclusion: Elemene Injection (EI) application has exhibited a significant capability to mitigate PTX resistance in BC, which has been achieved through targeted suppression of the AR/RUNX1 axis, revealing a key strategy to overcome chemotherapeutic resistance.
- Open Access
- 16 November 2023
- Published by Springer Nature in Research Square
Clinicopathological features and prognosis of HER2 low-expression breast cancer: a single-center retrospective study
Background With the development of novel anti-HER2 antibody-drug conjugates, the subgroup of breast cancer patients with low HER2 expression has attracted increasing interest. The aim of this study was to investigate the clinicopathological characteristics, molecular typing and survival prognosis of patients with HER2-low breast cancer. Methods This retrospective study involved the collection of 1023 cases of primary breast invasive ductal carcinoma patients who were diagnosed and treated at the Department of Breast Surgery of Zhejiang Provincial Hospital of Chinese Medicine between January 2016 and September 2021. Among them, 805 patients with HER2-negative breast cancer were included in the analysis. The aim of this study was to compare the clinicopathological characteristics, molecular typing, and survival prognosis between patients with HER2-low and HER2-zero breast cancer. The survival curves for disease-free survival (DFS) and breast cancer-specific survival (BCSS) were generated using the Kaplan-Meier method, and the log-rank test was applied to assess survival differences. Additionally, univariate and multivariate Cox proportional hazard regression models were used to analyze prognostic factors. Results Of the 805 patients with HER2-negative breast cancer, 515 (63.98%) had HER2 zero expression and 290 (36.02%) had HER2 low expression. HER2-low breast cancer patients accounts for 28.3% of all breast invasive ductal carcinoma, and the molecular typing was mainly Luminal B subtype. Compared with the HER2-zero group, the proportion of N stage 2 ~ 3 (P = 0.004), TNM stage 3 (P = 0.002) and HR positive status (P = 0.002) in the HER2-low group was higher. However, no significant difference was observed in DFS and BCSS between the two groups (P > 0.05). Among the 805 patients, 629 (78.1%) were HR positive and 176 (21.9%) were HR negative. Of the 629 HR-positive patients, 385 (61.2%) had HER2 zero expression and 244 (28.8%) had HER2 low expression. Compared with the HER2-zero group, the HER2-low group had a younger age at diagnosis (P = 0.031), a higher proportion of patients younger than 45 years (P = 0.003), and a higher incidence of N stage 2 ~ 3 (P = 0.001) and TNM stage 3 (P = 0.001). There was no significant difference in the DFS and BCSS between the two groups (P > 0.05). Among the 176 HR-negative patients, 130 (73.9%) had HER2 zero expression and 46 (26.1%) had HER2 low expression. Compared with the HER2-zero group, the patients in the HER2-low group were older at diagnosis (P = 0.047), and had a higher proportion of patients aged 45 or older (P = 0.036). Moreover, the HER2-low group had lower histological grade (P < 0.001) and Ki-67 proliferation index (P = 0.027). Nevertheless, DFS and BCSS did not significantly differ between the two groups (P > 0.05). Conclusion HER2-low breast cancer, which accounts for 28.3% of all breast invasive ductal carcinoma, has distinct clinicopathological characteristics and molecular typing. It appears that HR status plays a prominent role in determining the biological behavior of HER2-low breast cancer. Notably, no significant differences in survival prognosis were observed between HER2-low and HER2-zero breast cancer patients, regardless of HR status.
- 16 November 2023
- Published by Springer Nature in Research Square
Open AccessClinicopathological features and prognosis of HER2 low-expression breast cancer: a single-center retrospective study
Background With the development of novel anti-HER2 antibody-drug conjugates, the subgroup of breast cancer patients with low HER2 expression has attracted increasing interest. The aim of this study was to investigate the clinicopathological characteristics, molecular typing and survival prognosis of patients with HER2-low breast cancer. Methods This retrospective study involved the collection of 1023 cases of primary breast invasive ductal carcinoma patients who were diagnosed and treated at the Department of Breast Surgery of Zhejiang Provincial Hospital of Chinese Medicine between January 2016 and September 2021. Among them, 805 patients with HER2-negative breast cancer were included in the analysis. The aim of this study was to compare the clinicopathological characteristics, molecular typing, and survival prognosis between patients with HER2-low and HER2-zero breast cancer. The survival curves for disease-free survival (DFS) and breast cancer-specific survival (BCSS) were generated using the Kaplan-Meier method, and the log-rank test was applied to assess survival differences. Additionally, univariate and multivariate Cox proportional hazard regression models were used to analyze prognostic factors. Results Of the 805 patients with HER2-negative breast cancer, 515 (63.98%) had HER2 zero expression and 290 (36.02%) had HER2 low expression. HER2-low breast cancer patients accounts for 28.3% of all breast invasive ductal carcinoma, and the molecular typing was mainly Luminal B subtype. Compared with the HER2-zero group, the proportion of N stage 2 ~ 3 (P = 0.004), TNM stage 3 (P = 0.002) and HR positive status (P = 0.002) in the HER2-low group was higher. However, no significant difference was observed in DFS and BCSS between the two groups (P > 0.05). Among the 805 patients, 629 (78.1%) were HR positive and 176 (21.9%) were HR negative. Of the 629 HR-positive patients, 385 (61.2%) had HER2 zero expression and 244 (28.8%) had HER2 low expression. Compared with the HER2-zero group, the HER2-low group had a younger age at diagnosis (P = 0.031), a higher proportion of patients younger than 45 years (P = 0.003), and a higher incidence of N stage 2 ~ 3 (P = 0.001) and TNM stage 3 (P = 0.001). There was no significant difference in the DFS and BCSS between the two groups (P > 0.05). Among the 176 HR-negative patients, 130 (73.9%) had HER2 zero expression and 46 (26.1%) had HER2 low expression. Compared with the HER2-zero group, the patients in the HER2-low group were older at diagnosis (P = 0.047), and had a higher proportion of patients aged 45 or older (P = 0.036). Moreover, the HER2-low group had lower histological grade (P < 0.001) and Ki-67 proliferation index (P = 0.027). Nevertheless, DFS and BCSS did not significantly differ between the two groups (P > 0.05). Conclusion HER2-low breast cancer, which accounts for 28.3% of all breast invasive ductal carcinoma, has distinct clinicopathological characteristics and molecular typing. It appears that HR status plays a prominent role in determining the biological behavior of HER2-low breast cancer. Notably, no significant differences in survival prognosis were observed between HER2-low and HER2-zero breast cancer patients, regardless of HR status.
- Open Access
- 12 August 2022
- Published by Wolters Kluwer Health in Medicine
- Vol. 101 (32) , e30011
The predictive value of preoperative serum neutrophil-to-lymphocyte ratio and tumor markers for early breast cancer patients: A retrospective study
Peripheral blood of Neutrophil-to-Lymphocyte ratio (NLR), carcinoma embryonic antigen (CEA), cancer antigen 125 (CA125) and cancer antigen 15–3 (CA15-3) could be used as prognostic indicators for several types of tumors. The purpose of this study was to evaluate the predictive value of inflammatory cell ratio and tumor markers for postoperative breast cancer patients. Clinical data concerning 190 breast cancer patients who underwent radical surgery in Zhejiang Provincial Hospital of Chinese Medicine from 2013 and 2016 were retrospectively analyzed. The effects of NLR, CEA, CA125, and CA153 on the disease-free survival (DFS) of patients with breast cancer were analyzed by χ 2 test and Cox regression analyses. There were totally 32 of 190 patients had local or distant metastases within 5 years after surgery. The peripheral blood NLR, CEA, CA125, and CA15-3 areas under the curve (AUC) were 0.8272, 0.667, 0.702, and 0.715, and the optimal cutoff values were 2.65, 1.47, 10.55, and 10.55, respectively. Univariate analysis and Kaplan-Meier survival analysis revealed that the serum NLR, CEA, CA125, and CA15-3 were related to postoperative 5-year DFS (P < .05). In addition, multivariate survival analysis identified the following independent prognostic factors: NLR (P < .001), CA125 (P = .045) and ki-67 (P = .020). Preoperative serum inflammatory biomarker of NLR and tumor marker of CA125 have potential prognostic value for breast carcinoma.
- 12 August 2022
- Published by Wolters Kluwer Health in Medicine
- Vol. 101 (32) , e30011
Open AccessThe predictive value of preoperative serum neutrophil-to-lymphocyte ratio and tumor markers for early breast cancer patients: A retrospective study
Peripheral blood of Neutrophil-to-Lymphocyte ratio (NLR), carcinoma embryonic antigen (CEA), cancer antigen 125 (CA125) and cancer antigen 15–3 (CA15-3) could be used as prognostic indicators for several types of tumors. The purpose of this study was to evaluate the predictive value of inflammatory cell ratio and tumor markers for postoperative breast cancer patients. Clinical data concerning 190 breast cancer patients who underwent radical surgery in Zhejiang Provincial Hospital of Chinese Medicine from 2013 and 2016 were retrospectively analyzed. The effects of NLR, CEA, CA125, and CA153 on the disease-free survival (DFS) of patients with breast cancer were analyzed by χ 2 test and Cox regression analyses. There were totally 32 of 190 patients had local or distant metastases within 5 years after surgery. The peripheral blood NLR, CEA, CA125, and CA15-3 areas under the curve (AUC) were 0.8272, 0.667, 0.702, and 0.715, and the optimal cutoff values were 2.65, 1.47, 10.55, and 10.55, respectively. Univariate analysis and Kaplan-Meier survival analysis revealed that the serum NLR, CEA, CA125, and CA15-3 were related to postoperative 5-year DFS (P < .05). In addition, multivariate survival analysis identified the following independent prognostic factors: NLR (P < .001), CA125 (P = .045) and ki-67 (P = .020). Preoperative serum inflammatory biomarker of NLR and tumor marker of CA125 have potential prognostic value for breast carcinoma.
- Open Access
- 21 April 2020
- Published by Spandidos Publications in Oncology Letters
- Vol. 20 (1) , 113-122
Bioinformatics analysis of prognosis-related long non-coding RNAs in invasive breast carcinoma
Breast cancer is one of the most common types of cancer among women worldwide and needs more sensitive prognostic biomarkers to improve its treatment. In the present study, differentially expressed long non‑coding RNAs (lncRNAs) in invasive breast carcinoma from The Cancer Genome Atlas and cBioPortal database were investigated, identifying 292 differentially expressed lncRNAs in 1,100 cases. By analyzing the overall survival rate, 10 lncRNAs were significantly correlated with poor prognosis. To explore the underlying molecular mechanisms of the 10 prognosis‑related lncRNAs, bioinformatic methods were used to predict the potential target miRNAs, mRNAs and proteins, and to construct a lncRNA‑miRNA‑mRNA regulatory network and lncRNA‑protein interaction network. Finally, the functions of the target genes and proteins were insvestigated using Gene Ontology enrichment and Kyoto Encyclopedia of Genes and Genomes pathway analyses. The results showed that these 10 lncRNAs could be novel prognostic markers for invasive breast carcinoma and the present study aimed to provide novel insight into the diagnosis and treatment of breast cancer.
- 21 April 2020
- Published by Spandidos Publications in Oncology Letters
- Vol. 20 (1) , 113-122
Open AccessBioinformatics analysis of prognosis-related long non-coding RNAs in invasive breast carcinoma
Breast cancer is one of the most common types of cancer among women worldwide and needs more sensitive prognostic biomarkers to improve its treatment. In the present study, differentially expressed long non‑coding RNAs (lncRNAs) in invasive breast carcinoma from The Cancer Genome Atlas and cBioPortal database were investigated, identifying 292 differentially expressed lncRNAs in 1,100 cases. By analyzing the overall survival rate, 10 lncRNAs were significantly correlated with poor prognosis. To explore the underlying molecular mechanisms of the 10 prognosis‑related lncRNAs, bioinformatic methods were used to predict the potential target miRNAs, mRNAs and proteins, and to construct a lncRNA‑miRNA‑mRNA regulatory network and lncRNA‑protein interaction network. Finally, the functions of the target genes and proteins were insvestigated using Gene Ontology enrichment and Kyoto Encyclopedia of Genes and Genomes pathway analyses. The results showed that these 10 lncRNAs could be novel prognostic markers for invasive breast carcinoma and the present study aimed to provide novel insight into the diagnosis and treatment of breast cancer.