Ahmet Harmankaya
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Ahmet Harmankaya has a total of 23 co-authors. Here are the top co-authors by number of shared publications:
Sezen Harmankaya
Department of Food Processing, Kars Vocational School, Kafkas University, Kars, 36000, Turkey
2 shared publicationsCem Öziç
Kafkas University
1 shared publication- Fatma Hazan Gul
Mersin University
1 shared publication Fatma Hazan Gül
Department of Nutrition and Dietetics, Faculty of Health Sciences, Mersin University, Mersin, 33343, Turkey
1 shared publication- Fevzi Aytemiz
KAFKAS ÜNİVERSİTESİ, FEN-EDEBİYAT FAKÜLTESİ
1 shared publication - Gül Özdemir Toraman
Department of Chemistry, Faculty of Science and Letters, Kafkas University, Kars 36000, Türkiye
1 shared publication
Latest Publications
- Open Access
- 2 August 2026
- Published by MDPI AG in International Journal of Molecular Sciences
- Vol. 27 (15) , 6948
Biological Evaluation, Molecular Docking, and in Ovo Hatchability Assessment of Selected Mannich-Type 1,2,4-Triazol-5-one Derivatives
1,2,4-Triazole derivatives are widely investigated as bioactive heterocyclic compounds with diverse biological properties; however, their potential effects on avian embryonic development remain insufficiently characterized. This study aimed to synthesize selected Mannich-type 1,2,4-triazol-5-one derivatives and evaluate their in vitro biological activities, predicted enzyme interactions, and in ovo hatchability outcomes in broiler embryos. Three derivatives (3a–3c) were synthesized and structurally characterized using Fourier-transform infrared (FT-IR), proton nuclear magnetic resonance (1H-NMR), and carbon-13 nuclear magnetic resonance (13C-NMR) spectroscopy. Their reducing capacity, 2,2-diphenyl-1-picrylhydrazyl (DPPH) radical-scavenging activity, metal-chelating capacity, and antimicrobial activity were evaluated. Molecular docking analyses were performed against carbonic anhydrase II and catalase, using acetazolamide and 3-amino-1,2,4-triazole as reference inhibitors, respectively. For the in ovo assessment, fertilized Ross 308 eggs were allocated to non-injected control, vehicle control, and compound-treated groups. Compounds 3a, 3b, and 3c were administered on incubation day 17 at 20, 10, and 5 mg/egg, respectively, as literature-supported, compound-specific exploratory exposure levels. The compounds exhibited weak reducing capacity, negligible DPPH radical-scavenging activity, pronounced metal-chelating capacity, and selective antimicrobial activity against several bacterial strains, whereas no inhibition was observed against Escherichia coli. Docking analysis predicted favorable interactions with both enzyme targets, with compound 3c showing the most favorable binding energies. Baseline egg weights were comparable among groups, indicating that initial egg weight was unlikely to influence hatchability outcomes. Complete hatch failure occurred in all compound-treated groups, whereas hatchability was observed in the control groups. These findings suggest that the tested derivatives may adversely affect embryonic development under the applied in ovo conditions. Their pronounced metal-chelating capacity, together with the predicted interactions with carbonic anhydrase II and catalase, provides a plausible mechanistic framework for interpreting the observed embryonic outcomes. The molecular docking results complement the experimental findings and provide supportive in silico evidence for these potential interactions. These findings contribute to the limited literature on the in ovo evaluation of synthetic Mannich-type 1,2,4-triazol-5-one derivatives and provide preliminary evidence regarding their embryotoxic potential. Further dose-dependent, mechanistic, histopathological, and enzyme-based studies are required to clarify the biological basis of the observed effects and to guide future evaluation of these compounds in in ovo, biomedical, and veterinary applications.
- 2 August 2026
- Published by MDPI AG in International Journal of Molecular Sciences
- Vol. 27 (15) , 6948
Open AccessBiological Evaluation, Molecular Docking, and in Ovo Hatchability Assessment of Selected Mannich-Type 1,2,4-Triazol-5-one Derivatives
1,2,4-Triazole derivatives are widely investigated as bioactive heterocyclic compounds with diverse biological properties; however, their potential effects on avian embryonic development remain insufficiently characterized. This study aimed to synthesize selected Mannich-type 1,2,4-triazol-5-one derivatives and evaluate their in vitro biological activities, predicted enzyme interactions, and in ovo hatchability outcomes in broiler embryos. Three derivatives (3a–3c) were synthesized and structurally characterized using Fourier-transform infrared (FT-IR), proton nuclear magnetic resonance (1H-NMR), and carbon-13 nuclear magnetic resonance (13C-NMR) spectroscopy. Their reducing capacity, 2,2-diphenyl-1-picrylhydrazyl (DPPH) radical-scavenging activity, metal-chelating capacity, and antimicrobial activity were evaluated. Molecular docking analyses were performed against carbonic anhydrase II and catalase, using acetazolamide and 3-amino-1,2,4-triazole as reference inhibitors, respectively. For the in ovo assessment, fertilized Ross 308 eggs were allocated to non-injected control, vehicle control, and compound-treated groups. Compounds 3a, 3b, and 3c were administered on incubation day 17 at 20, 10, and 5 mg/egg, respectively, as literature-supported, compound-specific exploratory exposure levels. The compounds exhibited weak reducing capacity, negligible DPPH radical-scavenging activity, pronounced metal-chelating capacity, and selective antimicrobial activity against several bacterial strains, whereas no inhibition was observed against Escherichia coli. Docking analysis predicted favorable interactions with both enzyme targets, with compound 3c showing the most favorable binding energies. Baseline egg weights were comparable among groups, indicating that initial egg weight was unlikely to influence hatchability outcomes. Complete hatch failure occurred in all compound-treated groups, whereas hatchability was observed in the control groups. These findings suggest that the tested derivatives may adversely affect embryonic development under the applied in ovo conditions. Their pronounced metal-chelating capacity, together with the predicted interactions with carbonic anhydrase II and catalase, provides a plausible mechanistic framework for interpreting the observed embryonic outcomes. The molecular docking results complement the experimental findings and provide supportive in silico evidence for these potential interactions. These findings contribute to the limited literature on the in ovo evaluation of synthetic Mannich-type 1,2,4-triazol-5-one derivatives and provide preliminary evidence regarding their embryotoxic potential. Further dose-dependent, mechanistic, histopathological, and enzyme-based studies are required to clarify the biological basis of the observed effects and to guide future evaluation of these compounds in in ovo, biomedical, and veterinary applications.
- 13 October 2025
- Published by Springer Nature in Microchimica Acta
- Vol. 192 (11) , 729
A novel environmental pollutant thiophanate-methyl fungicide detection in milk samples by quartz crystal microbalance nanosensor based on molecularly imprinting polymer and sulfur-doped reduced graphene oxide nanomaterial
The purpose of this study was the development of a sensitive quartz crystal microbalance sensor based on a sulfur-doped reduced graphene oxide nanomaterial and molecularly imprinting polymer for thiophanate-methyl determination in milk samples. For this aim, the sulfur-doped reduced graphene oxide nanomaterial was firstly prepared by using a facile Hummers method with a high product yield. Then, a thiophanate-methyl-imprinted quartz crystal microbalance chip based on sulfur-doped reduced graphene oxide was accomplished by UV polymerization by the mixture including N,N'-azobisisobutyronitrile as an initiator, ethylene glycol dimethacrylate as a cross-linker, and methacryloylamidoglutamic acid as a monomer. The spectroscopic and microscopic methods were applied to confirm the presence of the nanocomposite and the reliability of the sensor preparation procedure. As a result, the prepared quartz crystal microbalance sensor exhibited linearity in the range 1.0 × 10-9-1.0 × 10-8 M with a detection limit of 3.3 × 10-10 M in milk samples. A quartz crystal microbalance technique with high sensitivity, selectivity, repeatability, reusability, and reproducibility was prepared for thiophanate-methyl determination in this study.
- 13 October 2025
- Published by Springer Nature in Microchimica Acta
- Vol. 192 (11) , 729
A novel environmental pollutant thiophanate-methyl fungicide detection in milk samples by quartz crystal microbalance nanosensor based on molecularly imprinting polymer and sulfur-doped reduced graphene oxide nanomaterial
The purpose of this study was the development of a sensitive quartz crystal microbalance sensor based on a sulfur-doped reduced graphene oxide nanomaterial and molecularly imprinting polymer for thiophanate-methyl determination in milk samples. For this aim, the sulfur-doped reduced graphene oxide nanomaterial was firstly prepared by using a facile Hummers method with a high product yield. Then, a thiophanate-methyl-imprinted quartz crystal microbalance chip based on sulfur-doped reduced graphene oxide was accomplished by UV polymerization by the mixture including N,N'-azobisisobutyronitrile as an initiator, ethylene glycol dimethacrylate as a cross-linker, and methacryloylamidoglutamic acid as a monomer. The spectroscopic and microscopic methods were applied to confirm the presence of the nanocomposite and the reliability of the sensor preparation procedure. As a result, the prepared quartz crystal microbalance sensor exhibited linearity in the range 1.0 × 10-9-1.0 × 10-8 M with a detection limit of 3.3 × 10-10 M in milk samples. A quartz crystal microbalance technique with high sensitivity, selectivity, repeatability, reusability, and reproducibility was prepared for thiophanate-methyl determination in this study.
- Open Access
- 3 July 2024
- Published by MDPI AG in Biosensors
- Vol. 14 (7) , 329
Thiram Determination in Milk Samples by Surface Plasmon Resonance Based on Molecularly Imprinted Polymers and Sulphur-Doped Titanium Dioxide
In this work, a new surface plasmon resonance (SPR) sensor based on sulphur-doped titanium dioxide (S-TiO2) nanostructures and molecularly imprinted polymer (MIP) was presented for thiram (THI) determination in milk samples. Firstly, the S-TiO2 nanomaterial with a high product yield was prepared by using a facile sol-gel hydrolysis technique with a high product yield. After that, UV polymerization was carried out for the preparation of the THI-imprinted SPR chip based on S-TiO2 using a mixture including ethylene glycol dimethacrylate (EGDMA) as the cross-linker, N,N′-azobisisobutyronitrile (AIBN) as the initiator, and methacryloylamidoglutamicacid (MAGA) as the monomer. The reliability of the sensor preparation procedure has been successfully proven by characterization studies of the prepared nanomaterials and SPR chip surfaces through spectroscopic, microscopic, and electrochemical methods. As a result, the prepared SPR sensor showed linearity in the range of 1.0 × 10−9–1.0 × 10−7 M with a detection limit (LOD) of 3.3 × 10−10 M in the real samples, and a sensor technique for THI determination with high sensitivity, repeatability, and selectivity can be included in the literature.
- 3 July 2024
- Published by MDPI AG in Biosensors
- Vol. 14 (7) , 329
Open AccessThiram Determination in Milk Samples by Surface Plasmon Resonance Based on Molecularly Imprinted Polymers and Sulphur-Doped Titanium Dioxide
In this work, a new surface plasmon resonance (SPR) sensor based on sulphur-doped titanium dioxide (S-TiO2) nanostructures and molecularly imprinted polymer (MIP) was presented for thiram (THI) determination in milk samples. Firstly, the S-TiO2 nanomaterial with a high product yield was prepared by using a facile sol-gel hydrolysis technique with a high product yield. After that, UV polymerization was carried out for the preparation of the THI-imprinted SPR chip based on S-TiO2 using a mixture including ethylene glycol dimethacrylate (EGDMA) as the cross-linker, N,N′-azobisisobutyronitrile (AIBN) as the initiator, and methacryloylamidoglutamicacid (MAGA) as the monomer. The reliability of the sensor preparation procedure has been successfully proven by characterization studies of the prepared nanomaterials and SPR chip surfaces through spectroscopic, microscopic, and electrochemical methods. As a result, the prepared SPR sensor showed linearity in the range of 1.0 × 10−9–1.0 × 10−7 M with a detection limit (LOD) of 3.3 × 10−10 M in the real samples, and a sensor technique for THI determination with high sensitivity, repeatability, and selectivity can be included in the literature.
- Open Access
- 2 February 2023
- Published by Springer Nature in Research Square
In vitro evaluation of the effects of Inula viscosa’s different extracts on wound healing and oxidative stress in mouse L929 fibroblast cell line
This study evaluated the effects of extracts prepared using two different methods (decoction extraction and, Soxhlet ethyl acetate/hexane extraction) from Inula viscosa on H2O2-induced oxidative stress and wound healing model in mouse L929 fibroblast cells. The cytotoxic effect started to disappear statistically (p < 0.05) at concentrations of Soxhlet ethyl acetate/hexane extracts (SoxEHEs) in and below 0.1 mg/mL, while the same effect was observed at concentrations of decoction extracts (DEs) in and below 0.2 mg/mL. Therefore, 0.2 and 0.02 mg/mL concentrations of DE, and 0.1 and 0.01 mg/mL concentrations of SoxEHEs were used. While cell migration was positively affected in all concentrations of the research, statistically significant results (p < 0.05) were obtained from 0.2 mg/mL of DE and 0.1 mg/mL of SoxEHE extracts. Malondialdehyde (MDA) levels were found to be statistically (p < 0.05) decreased, but COL1A1 levels were higher in cell lines treated with oxidative stress + extract than in the cell line treated only with H2O2, and reduced glutathione (GSH) levels were higher in cell lines only treated only with extract than in oxidative stress-induced cell lines. Consequently, it has been observed that the extracts have positive effects on migration and oxidative stress. Therefore, I. viscosa may serve as a new therapeutic agent for wound healing.
- 2 February 2023
- Published by Springer Nature in Research Square
Open AccessIn vitro evaluation of the effects of Inula viscosa’s different extracts on wound healing and oxidative stress in mouse L929 fibroblast cell line
This study evaluated the effects of extracts prepared using two different methods (decoction extraction and, Soxhlet ethyl acetate/hexane extraction) from Inula viscosa on H2O2-induced oxidative stress and wound healing model in mouse L929 fibroblast cells. The cytotoxic effect started to disappear statistically (p < 0.05) at concentrations of Soxhlet ethyl acetate/hexane extracts (SoxEHEs) in and below 0.1 mg/mL, while the same effect was observed at concentrations of decoction extracts (DEs) in and below 0.2 mg/mL. Therefore, 0.2 and 0.02 mg/mL concentrations of DE, and 0.1 and 0.01 mg/mL concentrations of SoxEHEs were used. While cell migration was positively affected in all concentrations of the research, statistically significant results (p < 0.05) were obtained from 0.2 mg/mL of DE and 0.1 mg/mL of SoxEHE extracts. Malondialdehyde (MDA) levels were found to be statistically (p < 0.05) decreased, but COL1A1 levels were higher in cell lines treated with oxidative stress + extract than in the cell line treated only with H2O2, and reduced glutathione (GSH) levels were higher in cell lines only treated only with extract than in oxidative stress-induced cell lines. Consequently, it has been observed that the extracts have positive effects on migration and oxidative stress. Therefore, I. viscosa may serve as a new therapeutic agent for wound healing.